Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004657.1

Orthogroup ID

OG0005359

Physical Location & Seq

Genomic Coordinates Forward (+)

44331 .. 46021

Gene Structure 1691 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004657.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

atggtgcctaaaatcccggatacaatctcaggtcttgcaagggattttctaggttgttgcctagctgaggaaaggtccactgccgaagagcttctgtctcatccctttgtagcagatagtgagaagtcatcggagacctcgccggactctagtgacgggtggccggtcgcggactctggtgatcggaatcctgcaaccggctaccagaatccagccaccgattaccgaaaaagcttgaatgaagaagaacaagtggagaagaaagacgacgtcgtgaagccacgccactggccgccgcagctcgacctggagcttctgtccctcaaaagctccgagttatacaccttcttcaaggacctcctcccctcctcctccttcgctaccgtccagtctctgacgcctaactcctctaccaactccagttacgagatcaccatccccaatcgccgtccggcggagatggtagtgaactcgggatctggagtccatgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

164

Amino Acids

18.03

Weight (kDa)

4.6

Isoelectric Point (pI)

52.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52520 AT5G06280 AT5G06280
fragaria_vesca	FvH4_2g15690 FvH4_6g19940
malus_domestica	MD10G1128300.v1.1 MD12G1037000.v1.1 MD14G1036000.v1.1
prunus_persica	Prupe.6G139500_v2.0.a1 Prupe.8G169400_v2.0.a1
pyrus_communis	pycom05g11960 pycom10g10990 pycom11g14540 pycom12g03200
rosa_chinensis	RchiOBHm_Chr3g0488241 RchiOBHm_Chr6g0278991
rosa_laevigata	RLG00000013177
rosa_multiflora	Rmu_sc0002080.1_g000023 Rmu_sc0003852.1_g000009 Rmu_sc0004657.1_g000016
rosa_roxburghii	Rroxscaffold_3G00226150 Rroxscaffold_7G00189250
rosa_rugosa	Rorug06G0120900
rosa_samantha	Rh4AG251600 Rh6BG234700 Rh6DG228500 Rh7BG424900
rosa_wichuraiana	Rw3G018010 Rw6G020120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	273
AccB1I	GGYRCC	1 cut(s)	4
AccII	CGCG	1 cut(s)	170
AciI	CCGC	4 cut(s)	170, 293, 296, 455
AclWI	GGATC	1 cut(s)	484
AcoI	YGGCCR	2 cut(s)	161, 290
AcyI	GRCGYC	2 cut(s)	270, 398
AfiI	CCNNNNNNNGG	3 cut(s)	67, 197, 454
AgsI	TTSAA	2 cut(s)	238, 352
AjnI	CCWGG	1 cut(s)	306
AluBI	AGCT	6 cut(s)	65, 91, 234, 301, 313, 330
AluI	AGCT	6 cut(s)	65, 91, 234, 301, 313, 330
Alw26I	GTCTC	3 cut(s)	102, 128, 396
AlwI	GGATC	1 cut(s)	484
AlwNI	CAGNNNCTG	1 cut(s)	394
Ama87I	CYCGRG	1 cut(s)	472
AoxI	GGCC	2 cut(s)	161, 290
ApeKI	GCWGC	1 cut(s)	298
Asp700I	GAANNNNTTC	1 cut(s)	90
AspS9I	GGNCC	2 cut(s)	75, 355
AsuC2I	CCSGG	1 cut(s)	17
AsuHPI	GGTGA	2 cut(s)	191, 424
AvaI	CYCGRG	1 cut(s)	472
AvaII	GGWCC	2 cut(s)	75, 355
BanI	GGYRCC	1 cut(s)	4
BbvCI	CCTCAGC	1 cut(s)	66
BbvI	GCAGC	1 cut(s)	310
BccI	CCATC	2 cut(s)	443, 454
BceAI	ACGGC	1 cut(s)	432
BciT130I	CCWGG	1 cut(s)	308
BciVI	GTATCC	1 cut(s)	13
BcnI	CCSGG	1 cut(s)	17
BcoDI	GTCTC	3 cut(s)	102, 128, 396
BfaI	CTAG	3 cut(s)	50, 62, 150
BfuI	GTATCC	1 cut(s)	13
BisI	GCNGC	3 cut(s)	293, 296, 299
BlsI	GCNGC	3 cut(s)	294, 297, 300
Bme1390I	CCNGG	2 cut(s)	17, 308
Bme18I	GGWCC	2 cut(s)	75, 355
BmeT110I	CYCGRG	1 cut(s)	472
BmgT120I	GGNCC	2 cut(s)	75, 355
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	2 cut(s)	17, 308
BpmI	CTGGAG	2 cut(s)	329, 403
Bpu10I	CCTNAGC	1 cut(s)	66
BpuMI	CCSGG	1 cut(s)	17
BsaBI	GATNNNNATC	2 cut(s)	186, 434
BsaHI	GRCGYC	2 cut(s)	270, 398
BsaI	GGTCTC	1 cut(s)	128
BsaXI	ACNNNNNCTCC	2 cut(s)	302, 332
Bsc4I	CCNNNNNNNGG	3 cut(s)	67, 197, 454
Bse118I	RCCGGY	2 cut(s)	163, 197
Bse1I	ACTGG	3 cut(s)	293, 388, 420
Bse8I	GATNNNNATC	2 cut(s)	186, 434
BseBI	CCWGG	1 cut(s)	308
BseGI	GGATG	2 cut(s)	100, 435
BseJI	GATNNNNATC	2 cut(s)	186, 434
BseLI	CCNNNNNNNGG	3 cut(s)	67, 197, 454
BseMII	CTCAG	2 cut(s)	42, 57
BseNI	ACTGG	3 cut(s)	293, 388, 420
BseRI	GAGGAG	4 cut(s)	350, 358, 361, 397
BseXI	GCAGC	1 cut(s)	310
Bsh1236I	CGCG	1 cut(s)	170
Bsh1285I	CGRYCG	1 cut(s)	168
BshFI	GGCC	2 cut(s)	163, 292
BshNI	GGYRCC	1 cut(s)	4
BsiEI	CGRYCG	1 cut(s)	168
BsiHKCI	CYCGRG	1 cut(s)	472
BsiSI	CCGG	5 cut(s)	17, 143, 164, 198, 452
BslFI	GGGAC	1 cut(s)	304
BslI	CCNNNNNNNGG	3 cut(s)	67, 197, 454
BsmAI	GTCTC	3 cut(s)	102, 128, 396
BsmFI	GGGAC	1 cut(s)	304
BsnI	GGCC	2 cut(s)	163, 292
Bso31I	GGTCTC	1 cut(s)	128
BsoBI	CYCGRG	1 cut(s)	472
Bsp143I	GATC	3 cut(s)	181, 429, 476
BspACI	CCGC	4 cut(s)	170, 293, 296, 455
BspANI	GGCC	2 cut(s)	163, 292
BspCNI	CTCAG	2 cut(s)	41, 58
BspFNI	CGCG	1 cut(s)	170
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	1 cut(s)	484
BspQI	GCTCTTC	1 cut(s)	81
BspT107I	GGYRCC	1 cut(s)	4
BspTNI	GGTCTC	1 cut(s)	128
BsrFI	RCCGGY	2 cut(s)	163, 197
BsrI	ACTGG	3 cut(s)	293, 388, 420
BssAI	RCCGGY	2 cut(s)	163, 197
BssMI	GATC	3 cut(s)	181, 429, 476
BssNI	GRCGYC	2 cut(s)	270, 398
Bst2UI	CCWGG	1 cut(s)	308
Bst4CI	ACNGT	1 cut(s)	385
Bst6I	CTCTTC	1 cut(s)	81
BstACI	GRCGYC	2 cut(s)	270, 398
BstDEI	CTNAG	2 cut(s)	28, 66
BstENI	CCTNNNNNAGG	1 cut(s)	65
BstF5I	GGATG	2 cut(s)	100, 435
BstFNI	CGCG	1 cut(s)	170
BstKTI	GATC	3 cut(s)	184, 432, 479
BstMAI	GTCTC	3 cut(s)	102, 128, 396
BstMBI	GATC	3 cut(s)	181, 429, 476
BstMCI	CGRYCG	1 cut(s)	168
BstMWI	GCNNNNNNNGC	1 cut(s)	298
BstNI	CCWGG	1 cut(s)	308
BstSCI	CCNGG	2 cut(s)	15, 306
BstUI	CGCG	1 cut(s)	170
BstV1I	GCAGC	1 cut(s)	310
BstX2I	RGATCY	1 cut(s)	476
BstXI	CCANNNNNNTGG	1 cut(s)	288
BstYI	RGATCY	1 cut(s)	476
BsuI	GTATCC	1 cut(s)	13
BsuRI	GGCC	2 cut(s)	163, 292
BtsCI	GGATG	2 cut(s)	100, 435
BtsI	GCAGTG	1 cut(s)	78
BtsIMutI	CAGTG	2 cut(s)	78, 286
CaiI	CAGNNNCTG	1 cut(s)	394
Cfr10I	RCCGGY	2 cut(s)	163, 197
Cfr13I	GGNCC	2 cut(s)	75, 355
CseI	GACGC	1 cut(s)	406
CviAII	CATG	1 cut(s)	488
DdeI	CTNAG	2 cut(s)	28, 66
DpnI	GATC	3 cut(s)	183, 431, 478
DpnII	GATC	3 cut(s)	181, 429, 476
EaeI	YGGCCR	2 cut(s)	161, 290
Eam1104I	CTCTTC	1 cut(s)	81
EarI	CTCTTC	1 cut(s)	81
EciI	GGCGGA	1 cut(s)	470
Eco31I	GGTCTC	1 cut(s)	128
Eco47I	GGWCC	2 cut(s)	75, 355
Eco88I	CYCGRG	1 cut(s)	472
EcoNI	CCTNNNNNAGG	1 cut(s)	65
EcoO109I	RGGNCCY	1 cut(s)	355
EcoRII	CCWGG	1 cut(s)	306
FaeI	CATG	1 cut(s)	491
FaiI	YATR	2 cut(s)	340, 489
FaqI	GGGAC	1 cut(s)	304
FatI	CATG	1 cut(s)	487
Fnu4HI	GCNGC	3 cut(s)	293, 296, 299
FokI	GGATG	2 cut(s)	87, 422
Fsp4HI	GCNGC	3 cut(s)	293, 296, 299
FspBI	CTAG	3 cut(s)	50, 62, 150
GluI	GCNGC	3 cut(s)	293, 296, 299
GsuI	CTGGAG	2 cut(s)	329, 403
HaeIII	GGCC	2 cut(s)	163, 292
HapII	CCGG	5 cut(s)	17, 143, 164, 198, 452
HgaI	GACGC	1 cut(s)	406
Hin1I	GRCGYC	2 cut(s)	270, 398
Hin1II	CATG	1 cut(s)	491
HindIII	AAGCTT	1 cut(s)	232
HinfI	GANTC	5 cut(s)	146, 173, 187, 208, 483
HpaII	CCGG	5 cut(s)	17, 143, 164, 198, 452
HphI	GGTGA	2 cut(s)	191, 424
Hpy166II	GTNNAC	2 cut(s)	78, 469
Hpy188I	TCNGA	4 cut(s)	133, 186, 334, 396
Hpy188III	TCNNGA	3 cut(s)	274, 474, 480
Hpy8I	GTNNAC	2 cut(s)	78, 469
Hpy99I	CGWCG	2 cut(s)	272, 275
HpyAV	CCTTC	2 cut(s)	355, 385
HpyCH4III	ACNGT	1 cut(s)	385
HpyCH4IV	ACGT	1 cut(s)	270
HpyCH4V	TGCA	2 cut(s)	38, 194
HpyF10VI	GCNNNNNNNGC	1 cut(s)	298
HpyF3I	CTNAG	2 cut(s)	28, 66
HpySE526I	ACGT	1 cut(s)	270
Hsp92I	GRCGYC	2 cut(s)	270, 398
Hsp92II	CATG	1 cut(s)	491
Kzo9I	GATC	3 cut(s)	181, 429, 476
LguI	GCTCTTC	1 cut(s)	81
LmnI	GCTCC	2 cut(s)	310, 335
Lsp1109I	GCAGC	1 cut(s)	310
MaeI	CTAG	3 cut(s)	50, 62, 150
MaeII	ACGT	1 cut(s)	270
MaeIII	GTNAC	2 cut(s)	152, 422
MalI	GATC	3 cut(s)	183, 431, 478
MboI	GATC	3 cut(s)	181, 429, 476
MboII	GAAGA	5 cut(s)	98, 254, 257, 271, 340
MflI	RGATCY	1 cut(s)	476
MlyI	GAGTC	3 cut(s)	140, 167, 492
MnlI	CCTC	9 cut(s)	61, 148, 332, 368, 371, 376, 379, 382, 418
MroXI	GAANNNNTTC	1 cut(s)	90
MspI	CCGG	5 cut(s)	17, 143, 164, 198, 452
MspR9I	CCNGG	2 cut(s)	17, 308
MvaI	CCWGG	1 cut(s)	308
MvnI	CGCG	1 cut(s)	170
MwoI	GCNNNNNNNGC	1 cut(s)	298
NciI	CCSGG	1 cut(s)	17
NdeII	GATC	3 cut(s)	181, 429, 476
NlaIII	CATG	1 cut(s)	491
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	152
PciSI	GCTCTTC	1 cut(s)	81
PdmI	GAANNNNTTC	1 cut(s)	90
PfeI	GAWTC	2 cut(s)	187, 208
PflFI	GACNNNGTC	1 cut(s)	269
PfoI	TCCNGGA	1 cut(s)	15
PkrI	GCNGC	3 cut(s)	294, 297, 300
PleI	GAGTC	3 cut(s)	140, 167, 491
PpsI	GAGTC	3 cut(s)	140, 167, 491
PpuMI	RGGWCCY	1 cut(s)	355
Psp5II	RGGWCCY	1 cut(s)	355
Psp6I	CCWGG	1 cut(s)	306
PspGI	CCWGG	1 cut(s)	306
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	2 cut(s)	75, 355
PspPPI	RGGWCCY	1 cut(s)	355
PstNI	CAGNNNCTG	1 cut(s)	394
PsuI	RGATCY	1 cut(s)	476
PsyI	GACNNNGTC	1 cut(s)	269
SapI	GCTCTTC	1 cut(s)	81
SatI	GCNGC	3 cut(s)	293, 296, 299
Sau3AI	GATC	3 cut(s)	181, 429, 476
Sau96I	GGNCC	2 cut(s)	75, 355
SchI	GAGTC	3 cut(s)	140, 167, 492
ScrFI	CCNGG	2 cut(s)	17, 308
SinI	GGWCC	2 cut(s)	75, 355
SsiI	CCGC	4 cut(s)	170, 293, 296, 455
SspMI	CTAG	3 cut(s)	50, 62, 150
StyD4I	CCNGG	2 cut(s)	15, 306
TaaI	ACNGT	1 cut(s)	385
TaiI	ACGT	1 cut(s)	273
TaqI	TCGA	1 cut(s)	303
TauI	GCSGC	2 cut(s)	295, 298
TfiI	GAWTC	2 cut(s)	187, 208
TscAI	CASTG	2 cut(s)	85, 293
TseFI	GTSAC	1 cut(s)	152
TseI	GCWGC	1 cut(s)	298
Tsp45I	GTSAC	1 cut(s)	152
TspDTI	ATGAA	1 cut(s)	255
TspRI	CASTG	2 cut(s)	85, 293
Tth111I	GACNNNGTC	1 cut(s)	269
VpaK11BI	GGWCC	2 cut(s)	75, 355
XagI	CCTNNNNNAGG	1 cut(s)	65
XmnI	GAANNNNTTC	1 cut(s)	90
XspI	CTAG	3 cut(s)	50, 62, 150
ZraI	GACGTC	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.