Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0005359

Physical Location & Seq

Genomic Coordinates Reverse (-)

3247589 .. 3248243

Gene Structure 655 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1036000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGACGATTCCACCCTACTCAGCTCATACCCGGCGGGCCCACTACTCCCGTCAAGCAAGCTCGGCCGCAGAAACTCCATCTCCACTTCCGTGGTGGTCCCCGCCAAGCTCAGCCTCCTCTCCGACACCACCACTCCCACCTCAGCGACCAAGCATCTCCAGCGCCTCCACAGCTCCACCTTCCCAAACGGTGACGTTTCGCCCCCAGCACCCCCTCAACTGGACCTGGAGTTCCTCTCCCACAAGAGCTCCGAATCCTACACTTCTCTCAAAGACCTGCTCCCCTCCTCCGCCGCTAACTCCCCCACCGCCGCCTCCGCCAACAACTCCGGCTACGAAATCTCCATCCGCAACCGCCTCGTGAAACAGGCCGCCTGGGCCTACCTCCAGCCCATGTCCTCCACCTCCGGCCCATCGGGCCCAAACTTCCTTCGCCGCCTCTGCCAAAAGCTCTCCCCCTGCCTCTCCTTCTTCACCAACCGCATCGTCCCCCTCCTCTCCCGAGCCCTCCGCCGCACACTCCTCTGTACCGGGCTCGCCACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

182

Amino Acids

19.39

Weight (kDa)

9.95

Isoelectric Point (pI)

62.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52520 AT5G06280 AT5G06280
fragaria_vesca	FvH4_2g15690 FvH4_6g19940
malus_domestica	MD10G1128300.v1.1 MD12G1037000.v1.1 MD14G1036000.v1.1
prunus_persica	Prupe.6G139500_v2.0.a1 Prupe.8G169400_v2.0.a1
pyrus_communis	pycom05g11960 pycom10g10990 pycom11g14540 pycom12g03200
rosa_chinensis	RchiOBHm_Chr3g0488241 RchiOBHm_Chr6g0278991
rosa_laevigata	RLG00000013177
rosa_multiflora	Rmu_sc0002080.1_g000023 Rmu_sc0003852.1_g000009 Rmu_sc0004657.1_g000016
rosa_roxburghii	Rroxscaffold_3G00226150 Rroxscaffold_7G00189250
rosa_rugosa	Rorug06G0120900
rosa_samantha	Rh4AG251600 Rh6BG234700 Rh6DG228500 Rh7BG424900
rosa_wichuraiana	Rw3G018010 Rw6G020120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	285
AcoI	YGGCCR	1 cut(s)	64
AfaI	GTAC	1 cut(s)	529
AfiI	CCNNNNNNNGG	1 cut(s)	220
AjnI	CCWGG	2 cut(s)	225, 374
AleI	CACNNNNGTG	1 cut(s)	89
AloI	GAACNNNNNNTCC	2 cut(s)	215, 247
AluBI	AGCT	6 cut(s)	24, 61, 109, 174, 249, 451
AluI	AGCT	6 cut(s)	24, 61, 109, 174, 249, 451
Alw21I	GWGCWC	1 cut(s)	251
Ama87I	CYCGRG	1 cut(s)	501
AoxI	GGCC	6 cut(s)	37, 64, 369, 378, 409, 418
ApaI	GGGCCC	2 cut(s)	41, 422
AspLEI	GCGC	1 cut(s)	165
AspS9I	GGNCC	8 cut(s)	37, 38, 97, 223, 378, 410, 418, 419
AsuC2I	CCSGG	2 cut(s)	32, 532
AsuHPI	GGTGA	2 cut(s)	203, 466
AvaI	CYCGRG	1 cut(s)	501
AvaII	GGWCC	2 cut(s)	97, 223
BaeGI	GKGCMC	2 cut(s)	41, 422
BanII	GRGCYC	5 cut(s)	41, 251, 422, 508, 537
BauI	CACGAG	1 cut(s)	359
Bbv12I	GWGCWC	1 cut(s)	251
BbvCI	CCTCAGC	1 cut(s)	142
BccI	CCATC	3 cut(s)	86, 353, 421
BcgI	CGANNNNNNTGC	2 cut(s)	340, 374
BciT130I	CCWGG	2 cut(s)	227, 376
BcnI	CCSGG	2 cut(s)	32, 532
BfoI	RGCGCY	1 cut(s)	166
BfuAI	ACCTGC	1 cut(s)	285
BglI	GCCNNNNNGGC	2 cut(s)	377, 417
BisI	GCNGC	6 cut(s)	67, 294, 312, 372, 436, 514
BlpI	GCTNAGC	1 cut(s)	110
BlsI	GCNGC	6 cut(s)	68, 295, 313, 373, 437, 515
Bme1390I	CCNGG	4 cut(s)	32, 227, 376, 532
Bme18I	GGWCC	2 cut(s)	97, 223
BmeT110I	CYCGRG	1 cut(s)	501
BmgT120I	GGNCC	8 cut(s)	37, 38, 97, 223, 378, 410, 418, 419
BmiI	GGNNCC	3 cut(s)	39, 99, 420
BmrFI	CCNGG	4 cut(s)	32, 227, 376, 532
BmsI	GCATC	2 cut(s)	163, 492
BplI	GAGNNNNNCTC	2 cut(s)	221, 253
BpmI	CTGGAG	3 cut(s)	143, 248, 371
Bpu10I	CCTNAGC	1 cut(s)	142
Bpu1102I	GCTNAGC	1 cut(s)	110
BpuMI	CCSGG	2 cut(s)	32, 532
BsaJI	CCNNGG	2 cut(s)	90, 375
BsaXI	ACNNNNNCTCC	8 cut(s)	65, 95, 118, 148, 233, 263, 326, 356
Bsc4I	CCNNNNNNNGG	1 cut(s)	220
Bse1I	ACTGG	1 cut(s)	225
BseBI	CCWGG	2 cut(s)	227, 376
BseDI	CCNNGG	2 cut(s)	90, 375
BseGI	GGATG	1 cut(s)	345
BseLI	CCNNNNNNNGG	1 cut(s)	220
BseMII	CTCAG	3 cut(s)	34, 124, 156
BseNI	ACTGG	1 cut(s)	225
BseRI	GAGGAG	4 cut(s)	107, 277, 485, 512
BseSI	GKGCMC	2 cut(s)	41, 422
BseX3I	CGGCCG	1 cut(s)	64
BseYI	CCCAGC	1 cut(s)	205
Bsh1285I	CGRYCG	1 cut(s)	67
BshFI	GGCC	6 cut(s)	39, 66, 371, 380, 411, 420
BsiEI	CGRYCG	1 cut(s)	67
BsiHKAI	GWGCWC	1 cut(s)	251
BsiHKCI	CYCGRG	1 cut(s)	501
BsiSI	CCGG	4 cut(s)	32, 330, 408, 531
BslFI	GGGAC	2 cut(s)	83, 473
BslI	CCNNNNNNNGG	1 cut(s)	220
BsmFI	GGGAC	2 cut(s)	83, 473
BsnI	GGCC	6 cut(s)	39, 66, 371, 380, 411, 420
BsoBI	CYCGRG	1 cut(s)	501
Bsp120I	GGGCCC	2 cut(s)	37, 418
Bsp1286I	GDGCHC	5 cut(s)	41, 251, 422, 508, 537
Bsp1720I	GCTNAGC	1 cut(s)	110
BspANI	GGCC	6 cut(s)	39, 66, 371, 380, 411, 420
BspCNI	CTCAG	3 cut(s)	33, 123, 155
BspLI	GGNNCC	3 cut(s)	39, 99, 420
BspMI	ACCTGC	1 cut(s)	285
BsrI	ACTGG	1 cut(s)	225
BssECI	CCNNGG	2 cut(s)	90, 375
BssSI	CACGAG	1 cut(s)	359
Bst2BI	CACGAG	1 cut(s)	359
Bst2UI	CCWGG	2 cut(s)	227, 376
Bst4CI	ACNGT	1 cut(s)	191
BstC8I	GCNNGC	3 cut(s)	37, 59, 537
BstDEI	CTNAG	3 cut(s)	20, 110, 142
BstDSI	CCRYGG	1 cut(s)	90
BstF5I	GGATG	1 cut(s)	345
BstH2I	RGCGCY	1 cut(s)	166
BstHHI	GCGC	1 cut(s)	165
BstMCI	CGRYCG	1 cut(s)	67
BstMWI	GCNNNNNNNGC	7 cut(s)	63, 160, 171, 317, 377, 417, 441
BstNI	CCWGG	2 cut(s)	227, 376
BstSCI	CCNGG	4 cut(s)	30, 225, 374, 530
BstSLI	GKGCMC	2 cut(s)	41, 422
BstXI	CCANNNNNNTGG	1 cut(s)	91
BstZI	CGGCCG	1 cut(s)	64
BsuRI	GGCC	6 cut(s)	39, 66, 371, 380, 411, 420
BtgI	CCRYGG	1 cut(s)	90
BtsCI	GGATG	1 cut(s)	345
BveI	ACCTGC	1 cut(s)	285
Cac8I	GCNNGC	3 cut(s)	37, 59, 537
CfoI	GCGC	1 cut(s)	165
Cfr13I	GGNCC	8 cut(s)	37, 38, 97, 223, 378, 410, 418, 419
Csp6I	GTAC	1 cut(s)	528
CviAII	CATG	1 cut(s)	394
CviQI	GTAC	1 cut(s)	528
DdeI	CTNAG	3 cut(s)	20, 110, 142
EaeI	YGGCCR	1 cut(s)	64
EagI	CGGCCG	1 cut(s)	64
EciI	GGCGGA	3 cut(s)	280, 307, 500
Ecl136II	GAGCTC	1 cut(s)	249
EclXI	CGGCCG	1 cut(s)	64
Eco24I	GRGCYC	5 cut(s)	41, 251, 422, 508, 537
Eco47I	GGWCC	2 cut(s)	97, 223
Eco52I	CGGCCG	1 cut(s)	64
Eco53kI	GAGCTC	1 cut(s)	249
Eco88I	CYCGRG	1 cut(s)	501
EcoICRI	GAGCTC	1 cut(s)	249
EcoRII	CCWGG	2 cut(s)	225, 374
EcoT38I	GRGCYC	5 cut(s)	41, 251, 422, 508, 537
FaeI	CATG	1 cut(s)	397
FaiI	YATR	2 cut(s)	28, 395
FaqI	GGGAC	2 cut(s)	83, 473
FatI	CATG	1 cut(s)	393
FauI	CCCGC	2 cut(s)	28, 109
Fnu4HI	GCNGC	6 cut(s)	67, 294, 312, 372, 436, 514
FokI	GGATG	1 cut(s)	332
FriOI	GRGCYC	5 cut(s)	41, 251, 422, 508, 537
Fsp4HI	GCNGC	6 cut(s)	67, 294, 312, 372, 436, 514
GlaI	GCGC	1 cut(s)	164
GluI	GCNGC	6 cut(s)	67, 294, 312, 372, 436, 514
GsaI	CCCAGC	1 cut(s)	209
GsuI	CTGGAG	3 cut(s)	143, 248, 371
HaeII	RGCGCY	1 cut(s)	166
HaeIII	GGCC	6 cut(s)	39, 66, 371, 380, 411, 420
HapII	CCGG	4 cut(s)	32, 330, 408, 531
HhaI	GCGC	1 cut(s)	165
Hin1II	CATG	1 cut(s)	397
Hin6I	GCGC	1 cut(s)	163
HinP1I	GCGC	1 cut(s)	163
HinfI	GANTC	2 cut(s)	8, 254
HpaII	CCGG	4 cut(s)	32, 330, 408, 531
HphI	GGTGA	2 cut(s)	203, 466
Hpy188I	TCNGA	2 cut(s)	124, 253
Hpy188III	TCNNGA	2 cut(s)	361, 501
HpyAV	CCTTC	3 cut(s)	190, 440, 478
HpyCH4III	ACNGT	1 cut(s)	191
HpyCH4IV	ACGT	1 cut(s)	195
HpyF10VI	GCNNNNNNNGC	7 cut(s)	63, 160, 171, 317, 377, 417, 441
HpyF3I	CTNAG	3 cut(s)	20, 110, 142
HpySE526I	ACGT	1 cut(s)	195
Hsp92II	CATG	1 cut(s)	397
HspAI	GCGC	1 cut(s)	163
LmnI	GCTCC	3 cut(s)	179, 254, 285
LweI	GCATC	2 cut(s)	163, 492
MaeII	ACGT	1 cut(s)	195
MaeIII	GTNAC	1 cut(s)	191
MboII	GAAGA	1 cut(s)	463
MhlI	GDGCHC	5 cut(s)	41, 251, 422, 508, 537
MmeI	TCCRAC	1 cut(s)	147
MslI	CAYNNNNRTG	1 cut(s)	89
MspI	CCGG	4 cut(s)	32, 330, 408, 531
MspR9I	CCNGG	4 cut(s)	32, 227, 376, 532
MvaI	CCWGG	2 cut(s)	227, 376
MwoI	GCNNNNNNNGC	7 cut(s)	63, 160, 171, 317, 377, 417, 441
NciI	CCSGG	2 cut(s)	32, 532
NlaIII	CATG	1 cut(s)	397
NlaIV	GGNNCC	3 cut(s)	39, 99, 420
NmeAIII	GCCGAG	1 cut(s)	42
NmuCI	GTSAC	1 cut(s)	191
OliI	CACNNNNGTG	1 cut(s)	89
PfeI	GAWTC	2 cut(s)	8, 254
PkrI	GCNGC	6 cut(s)	68, 295, 313, 373, 437, 515
Psp124BI	GAGCTC	1 cut(s)	251
Psp6I	CCWGG	2 cut(s)	225, 374
PspFI	CCCAGC	1 cut(s)	205
PspGI	CCWGG	2 cut(s)	225, 374
PspN4I	GGNNCC	3 cut(s)	39, 99, 420
PspOMI	GGGCCC	2 cut(s)	37, 418
PspPI	GGNCC	8 cut(s)	37, 38, 97, 223, 378, 410, 418, 419
RsaI	GTAC	1 cut(s)	529
RsaNI	GTAC	1 cut(s)	528
RseI	CAYNNNNRTG	1 cut(s)	89
SacI	GAGCTC	1 cut(s)	251
SatI	GCNGC	6 cut(s)	67, 294, 312, 372, 436, 514
Sau96I	GGNCC	8 cut(s)	37, 38, 97, 223, 378, 410, 418, 419
ScrFI	CCNGG	4 cut(s)	32, 227, 376, 532
SduI	GDGCHC	5 cut(s)	41, 251, 422, 508, 537
SfaNI	GCATC	2 cut(s)	163, 492
SfiI	GGCCNNNNNGGCC	2 cut(s)	377, 417
SinI	GGWCC	2 cut(s)	97, 223
SmiMI	CAYNNNNRTG	1 cut(s)	89
SstI	GAGCTC	1 cut(s)	251
StyD4I	CCNGG	4 cut(s)	30, 225, 374, 530
TaaI	ACNGT	1 cut(s)	191
TaiI	ACGT	1 cut(s)	198
TauI	GCSGC	6 cut(s)	69, 296, 314, 374, 438, 516
TfiI	GAWTC	2 cut(s)	8, 254
TseFI	GTSAC	1 cut(s)	191
Tsp45I	GTSAC	1 cut(s)	191
TspGWI	ACGGA	1 cut(s)	79
VpaK11BI	GGWCC	2 cut(s)	97, 223
XcmI	CCANNNNNNNNNTGG	1 cut(s)	91

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.