Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0005359

Physical Location & Seq

Genomic Coordinates Reverse (-)

13376535 .. 13377785

Gene Structure 1251 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g19940.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGACGACGACACTACTGCTCCGCCGCGCCTCCTGGGCCCACTCCACCTCCGCCGCCGCAACTCCATCTCCACCTCCGTCGTCCTCCCCTCCAAGCTCAGCCCCCTCTCCTCCTCATCCTCCACCTCCTCCACCTCCACCACTCCCACCAACAAGCCCCGCCACAGCTGCAGCTTCCCAACCCAAAACGGCAGCGCCGCCACAACGCCGCGCCACCGCCCGCCGCAACTCGACCTGGAGTTTCTCTCCCTCAAAAGCTCCGAGTCCTACACCTCCCTCAAGGACCTCCTCCCCTCCTCCTCCTTCGCCGCCGTCCAGTCCCCGACGCCCAACTCCGCCACCACCGGCTACCAGATCTCCATCCGCAACCGCCTCGTCAAGCAGGCCGCCTGGGCCTACCTCCAGCCCATGTCCTCCACCTCCGGCCCATCCGGCCCACACTTGCTCCGACGCGTCTGGCTCAAATGCTCCACCTGCCTCTCCCGAATCCTCCATCGCTTACTTCCCTGCTTCTTTCTCTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

175

Amino Acids

18.97

Weight (kDa)

10.48

Isoelectric Point (pI)

62.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52520 AT5G06280 AT5G06280
fragaria_vesca	FvH4_2g15690 FvH4_6g19940
malus_domestica	MD10G1128300.v1.1 MD12G1037000.v1.1 MD14G1036000.v1.1
prunus_persica	Prupe.6G139500_v2.0.a1 Prupe.8G169400_v2.0.a1
pyrus_communis	pycom05g11960 pycom10g10990 pycom11g14540 pycom12g03200
rosa_chinensis	RchiOBHm_Chr3g0488241 RchiOBHm_Chr6g0278991
rosa_laevigata	RLG00000013177
rosa_multiflora	Rmu_sc0002080.1_g000023 Rmu_sc0003852.1_g000009 Rmu_sc0004657.1_g000016
rosa_roxburghii	Rroxscaffold_3G00226150 Rroxscaffold_7G00189250
rosa_rugosa	Rorug06G0120900
rosa_samantha	Rh4AG251600 Rh6BG234700 Rh6DG228500 Rh7BG424900
rosa_wichuraiana	Rw3G018010 Rw6G020120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	482
Acc36I	ACCTGC	1 cut(s)	482
AccII	CGCG	3 cut(s)	28, 211, 453
AcyI	GRCGYC	1 cut(s)	326
AflIII	ACRYGT	1 cut(s)	451
AjnI	CCWGG	3 cut(s)	33, 234, 389
AluBI	AGCT	4 cut(s)	97, 168, 174, 258
AluI	AGCT	4 cut(s)	97, 168, 174, 258
AoxI	GGCC	5 cut(s)	37, 384, 393, 424, 433
ApaI	GGGCCC	1 cut(s)	41
ApeKI	GCWGC	3 cut(s)	168, 171, 192
AspLEI	GCGC	3 cut(s)	30, 197, 213
AspS9I	GGNCC	6 cut(s)	37, 38, 283, 393, 425, 434
AvaII	GGWCC	1 cut(s)	283
BaeGI	GKGCMC	1 cut(s)	41
BanII	GRGCYC	1 cut(s)	41
BbvI	GCAGC	3 cut(s)	155, 183, 204
BccI	CCATC	4 cut(s)	74, 368, 436, 501
BceAI	ACGGC	2 cut(s)	205, 296
BcgI	CGANNNNNNTGC	3 cut(s)	33, 355, 389
BciT130I	CCWGG	3 cut(s)	35, 236, 391
BfmI	CTRYAG	1 cut(s)	169
BfoI	RGCGCY	1 cut(s)	198
BfuAI	ACCTGC	1 cut(s)	482
BglI	GCCNNNNNGGC	3 cut(s)	36, 392, 432
BglII	AGATCT	1 cut(s)	354
BlpI	GCTNAGC	1 cut(s)	98
Bme1390I	CCNGG	3 cut(s)	35, 236, 391
Bme18I	GGWCC	1 cut(s)	283
BmgT120I	GGNCC	6 cut(s)	37, 38, 283, 393, 425, 434
BmiI	GGNNCC	1 cut(s)	39
BmrFI	CCNGG	3 cut(s)	35, 236, 391
BplI	GAGNNNNNCTC	2 cut(s)	230, 262
BpmI	CTGGAG	2 cut(s)	257, 386
Bpu1102I	GCTNAGC	1 cut(s)	98
BpuEI	CTTGAG	1 cut(s)	263
BsaBI	GATNNNNATC	1 cut(s)	359
BsaHI	GRCGYC	1 cut(s)	326
BsaJI	CCNNGG	2 cut(s)	34, 390
BsaXI	ACNNNNNCTCC	9 cut(s)	33, 34, 53, 63, 83, 341, 371, 429, 459
Bse118I	RCCGGY	1 cut(s)	344
Bse1I	ACTGG	1 cut(s)	316
Bse8I	GATNNNNATC	1 cut(s)	359
BseBI	CCWGG	3 cut(s)	35, 236, 391
BseDI	CCNNGG	2 cut(s)	34, 390
BseGI	GGATG	3 cut(s)	116, 360, 428
BseJI	GATNNNNATC	1 cut(s)	359
BseMII	CTCAG	1 cut(s)	112
BseNI	ACTGG	1 cut(s)	316
BseRI	GAGGAG	6 cut(s)	100, 103, 118, 278, 286, 289
BseSI	GKGCMC	1 cut(s)	41
BseXI	GCAGC	3 cut(s)	155, 183, 204
Bsh1236I	CGCG	3 cut(s)	28, 211, 453
BshFI	GGCC	5 cut(s)	39, 386, 395, 426, 435
BsiSI	CCGG	3 cut(s)	345, 423, 432
BslFI	GGGAC	1 cut(s)	304
BsmFI	GGGAC	1 cut(s)	304
BsnI	GGCC	5 cut(s)	39, 386, 395, 426, 435
Bsp120I	GGGCCC	1 cut(s)	37
Bsp1286I	GDGCHC	1 cut(s)	41
Bsp143I	GATC	1 cut(s)	354
Bsp1720I	GCTNAGC	1 cut(s)	98
BspANI	GGCC	5 cut(s)	39, 386, 395, 426, 435
BspCNI	CTCAG	1 cut(s)	111
BspFNI	CGCG	3 cut(s)	28, 211, 453
BspLI	GGNNCC	1 cut(s)	39
BspMAI	CTGCAG	1 cut(s)	173
BspMI	ACCTGC	1 cut(s)	482
BsrFI	RCCGGY	1 cut(s)	344
BsrI	ACTGG	1 cut(s)	316
BssAI	RCCGGY	1 cut(s)	344
BssECI	CCNNGG	2 cut(s)	34, 390
BssMI	GATC	1 cut(s)	354
BssNI	GRCGYC	1 cut(s)	326
Bst2UI	CCWGG	3 cut(s)	35, 236, 391
BstACI	GRCGYC	1 cut(s)	326
BstC8I	GCNNGC	2 cut(s)	221, 384
BstDEI	CTNAG	1 cut(s)	98
BstF5I	GGATG	3 cut(s)	116, 360, 428
BstFNI	CGCG	3 cut(s)	28, 211, 453
BstH2I	RGCGCY	1 cut(s)	198
BstHHI	GCGC	3 cut(s)	30, 197, 213
BstKTI	GATC	1 cut(s)	357
BstMBI	GATC	1 cut(s)	354
BstMWI	GCNNNNNNNGC	5 cut(s)	36, 168, 392, 432, 474
BstNI	CCWGG	3 cut(s)	35, 236, 391
BstSCI	CCNGG	3 cut(s)	33, 234, 389
BstSFI	CTRYAG	1 cut(s)	169
BstSLI	GKGCMC	1 cut(s)	41
BstUI	CGCG	3 cut(s)	28, 211, 453
BstV1I	GCAGC	3 cut(s)	155, 183, 204
BstX2I	RGATCY	1 cut(s)	354
BstYI	RGATCY	1 cut(s)	354
BsuRI	GGCC	5 cut(s)	39, 386, 395, 426, 435
BtgZI	GCGATG	1 cut(s)	479
BtsCI	GGATG	3 cut(s)	116, 360, 428
BveI	ACCTGC	1 cut(s)	482
Cac8I	GCNNGC	2 cut(s)	221, 384
CfoI	GCGC	3 cut(s)	30, 197, 213
Cfr10I	RCCGGY	1 cut(s)	344
Cfr13I	GGNCC	6 cut(s)	37, 38, 283, 393, 425, 434
CseI	GACGC	3 cut(s)	334, 442, 459
CviAII	CATG	1 cut(s)	409
DdeI	CTNAG	1 cut(s)	98
DpnI	GATC	1 cut(s)	356
DpnII	GATC	1 cut(s)	354
EciI	GGCGGA	3 cut(s)	12, 41, 325
Eco24I	GRGCYC	1 cut(s)	41
Eco47I	GGWCC	1 cut(s)	283
EcoO109I	RGGNCCY	1 cut(s)	283
EcoRII	CCWGG	3 cut(s)	33, 234, 389
EcoT38I	GRGCYC	1 cut(s)	41
FaeI	CATG	1 cut(s)	412
FaiI	YATR	1 cut(s)	410
FaqI	GGGAC	1 cut(s)	304
FatI	CATG	1 cut(s)	408
FauI	CCCGC	2 cut(s)	167, 228
FokI	GGATG	3 cut(s)	103, 347, 415
FriOI	GRGCYC	1 cut(s)	41
GlaI	GCGC	3 cut(s)	29, 196, 212
GsuI	CTGGAG	2 cut(s)	257, 386
HaeII	RGCGCY	1 cut(s)	198
HaeIII	GGCC	5 cut(s)	39, 386, 395, 426, 435
HapII	CCGG	3 cut(s)	345, 423, 432
HgaI	GACGC	3 cut(s)	334, 442, 459
HhaI	GCGC	3 cut(s)	30, 197, 213
Hin1I	GRCGYC	1 cut(s)	326
Hin1II	CATG	1 cut(s)	412
Hin6I	GCGC	3 cut(s)	28, 195, 211
HinP1I	GCGC	3 cut(s)	28, 195, 211
HinfI	GANTC	2 cut(s)	263, 486
HpaII	CCGG	3 cut(s)	345, 423, 432
Hpy188I	TCNGA	2 cut(s)	262, 449
Hpy188III	TCNNGA	1 cut(s)	483
Hpy99I	CGWCG	4 cut(s)	11, 83, 328, 453
HpyAV	CCTTC	1 cut(s)	313
HpyCH4V	TGCA	1 cut(s)	171
HpyF10VI	GCNNNNNNNGC	5 cut(s)	36, 168, 392, 432, 474
HpyF3I	CTNAG	1 cut(s)	98
Hsp92I	GRCGYC	1 cut(s)	326
Hsp92II	CATG	1 cut(s)	412
HspAI	GCGC	3 cut(s)	28, 195, 211
Kzo9I	GATC	1 cut(s)	354
LmnI	GCTCC	4 cut(s)	25, 263, 450, 473
Lsp1109I	GCAGC	3 cut(s)	155, 183, 204
MalI	GATC	1 cut(s)	356
MboI	GATC	1 cut(s)	354
MflI	RGATCY	1 cut(s)	354
MhlI	GDGCHC	1 cut(s)	41
MluI	ACGCGT	1 cut(s)	451
MlyI	GAGTC	1 cut(s)	272
MmeI	TCCRAC	1 cut(s)	472
MspA1I	CMGCKG	1 cut(s)	168
MspI	CCGG	3 cut(s)	345, 423, 432
MspR9I	CCNGG	3 cut(s)	35, 236, 391
MvaI	CCWGG	3 cut(s)	35, 236, 391
MvnI	CGCG	3 cut(s)	28, 211, 453
MwoI	GCNNNNNNNGC	5 cut(s)	36, 168, 392, 432, 474
NdeII	GATC	1 cut(s)	354
NlaIII	CATG	1 cut(s)	412
NlaIV	GGNNCC	1 cut(s)	39
PaqCI	CACCTGC	1 cut(s)	482
PfeI	GAWTC	1 cut(s)	486
PleI	GAGTC	1 cut(s)	271
PpsI	GAGTC	1 cut(s)	271
PpuMI	RGGWCCY	1 cut(s)	283
Psp5II	RGGWCCY	1 cut(s)	283
Psp6I	CCWGG	3 cut(s)	33, 234, 389
PspGI	CCWGG	3 cut(s)	33, 234, 389
PspN4I	GGNNCC	1 cut(s)	39
PspOMI	GGGCCC	1 cut(s)	37
PspPI	GGNCC	6 cut(s)	37, 38, 283, 393, 425, 434
PspPPI	RGGWCCY	1 cut(s)	283
PstI	CTGCAG	1 cut(s)	173
PsuI	RGATCY	1 cut(s)	354
PvuII	CAGCTG	1 cut(s)	168
Sau3AI	GATC	1 cut(s)	354
Sau96I	GGNCC	6 cut(s)	37, 38, 283, 393, 425, 434
SchI	GAGTC	1 cut(s)	272
ScrFI	CCNGG	3 cut(s)	35, 236, 391
SduI	GDGCHC	1 cut(s)	41
SfcI	CTRYAG	1 cut(s)	169
SfiI	GGCCNNNNNGGCC	2 cut(s)	392, 432
SinI	GGWCC	1 cut(s)	283
SmlI	CTYRAG	1 cut(s)	278
SmoI	CTYRAG	1 cut(s)	278
StyD4I	CCNGG	3 cut(s)	33, 234, 389
TaqI	TCGA	1 cut(s)	231
TauI	GCSGC	8 cut(s)	28, 57, 60, 200, 211, 226, 311, 389
TfiI	GAWTC	1 cut(s)	486
TseI	GCWGC	3 cut(s)	168, 171, 192
TspGWI	ACGGA	1 cut(s)	67
VpaK11BI	GGWCC	1 cut(s)	283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.