Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0005359

Physical Location & Seq

Genomic Coordinates Reverse (-)

56502646 .. 56503104

Gene Structure 459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG251600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGCCACACCATCGGCCGCCGCAGCTCGACCTAGATTTTCTGTCCCTCAAGAGCTCCGAGTCCTACACCTCCCTCAAGGACCTCCTCCCCTCTTCCTCTTTCGCCGCCGTCCAGTCCCCGACGCCCAACTCCGCCACCAACTCCGGCTACGAGATCTCCATCTGCAACCTCCTCGTCAAGCAGGCTGGGCCTTCCTCCAGCCCATGTCCTTCACCTGCGACCCACACTTGCTCCGCCGCCTCTGGCTCAAGTGCAGCCCCTGCCTCTCCTTCATCACCCACCGCCTCTTCCCCTTTCTCTCCCAAACCCACCATCGCTTACTTCTTTGCTTCCAGCTCTCTTAACATCTACTTCACTTTTCAAACCCAGTTCGTTACTTTCAGGTTCGCACACAGTCAACAACACATTGCCCAGTCTCTCAAACTCATGTTAGGGCTCCACCGTGTCGTTGGTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

152

Amino Acids

16.11

Weight (kDa)

8.91

Isoelectric Point (pI)

73.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52520 AT5G06280 AT5G06280
fragaria_vesca	FvH4_2g15690 FvH4_6g19940
malus_domestica	MD10G1128300.v1.1 MD12G1037000.v1.1 MD14G1036000.v1.1
prunus_persica	Prupe.6G139500_v2.0.a1 Prupe.8G169400_v2.0.a1
pyrus_communis	pycom05g11960 pycom10g10990 pycom11g14540 pycom12g03200
rosa_chinensis	RchiOBHm_Chr3g0488241 RchiOBHm_Chr6g0278991
rosa_laevigata	RLG00000013177
rosa_multiflora	Rmu_sc0002080.1_g000023 Rmu_sc0003852.1_g000009 Rmu_sc0004657.1_g000016
rosa_roxburghii	Rroxscaffold_3G00226150 Rroxscaffold_7G00189250
rosa_rugosa	Rorug06G0120900
rosa_samantha	Rh4AG251600 Rh6BG234700 Rh6DG228500 Rh7BG424900
rosa_wichuraiana	Rw3G018010 Rw6G020120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	223
Acc36I	ACCTGC	1 cut(s)	223
AciI	CCGC	7 cut(s)	17, 20, 105, 132, 234, 237, 282
AcoI	YGGCCR	1 cut(s)	14
AcyI	GRCGYC	1 cut(s)	122
AgsI	TTSAA	1 cut(s)	362
AluBI	AGCT	3 cut(s)	25, 54, 336
AluI	AGCT	3 cut(s)	25, 54, 336
Alw21I	GWGCWC	1 cut(s)	56
Alw26I	GTCTC	1 cut(s)	420
AlwNI	CAGNNNCTG	1 cut(s)	260
AoxI	GGCC	2 cut(s)	14, 188
ApeKI	GCWGC	2 cut(s)	22, 254
AspS9I	GGNCC	2 cut(s)	79, 188
AsuHPI	GGTGA	2 cut(s)	204, 267
AvaII	GGWCC	1 cut(s)	79
BanII	GRGCYC	2 cut(s)	56, 438
Bbv12I	GWGCWC	1 cut(s)	56
BbvI	GCAGC	2 cut(s)	34, 266
BccI	CCATC	3 cut(s)	18, 167, 320
BceAI	ACGGC	1 cut(s)	92
BcgI	CGANNNNNNTGC	2 cut(s)	154, 188
BcoDI	GTCTC	1 cut(s)	420
BfaI	CTAG	1 cut(s)	32
BfuAI	ACCTGC	1 cut(s)	223
BglII	AGATCT	1 cut(s)	153
BisI	GCNGC	6 cut(s)	17, 20, 23, 105, 237, 255
BlsI	GCNGC	6 cut(s)	18, 21, 24, 106, 238, 256
Bme18I	GGWCC	1 cut(s)	79
BmgT120I	GGNCC	2 cut(s)	79, 188
BmiI	GGNNCC	1 cut(s)	437
BmrI	ACTGGG	2 cut(s)	361, 406
BmuI	ACTGGG	2 cut(s)	361, 406
BpmI	CTGGAG	1 cut(s)	181
BpuEI	CTTGAG	3 cut(s)	32, 59, 232
BsaBI	GATNNNNATC	1 cut(s)	158
BsaHI	GRCGYC	1 cut(s)	122
BsaXI	ACNNNNNCTCC	4 cut(s)	140, 170, 215, 245
Bse1I	ACTGG	3 cut(s)	112, 367, 412
Bse3DI	GCAATG	1 cut(s)	405
Bse8I	GATNNNNATC	1 cut(s)	158
BseJI	GATNNNNATC	1 cut(s)	158
BseMI	GCAATG	1 cut(s)	405
BseNI	ACTGG	3 cut(s)	112, 367, 412
BseRI	GAGGAG	2 cut(s)	74, 161
BseX3I	CGGCCG	1 cut(s)	14
BseXI	GCAGC	2 cut(s)	34, 266
BseYI	CCCAGC	1 cut(s)	185
BsgI	GTGCAG	1 cut(s)	273
Bsh1285I	CGRYCG	1 cut(s)	17
BshFI	GGCC	2 cut(s)	16, 190
BsiEI	CGRYCG	1 cut(s)	17
BsiHKAI	GWGCWC	1 cut(s)	56
BsiSI	CCGG	1 cut(s)	144
BslFI	GGGAC	2 cut(s)	28, 100
BsmAI	GTCTC	1 cut(s)	420
BsmFI	GGGAC	2 cut(s)	28, 100
BsnI	GGCC	2 cut(s)	16, 190
Bsp1286I	GDGCHC	2 cut(s)	56, 438
Bsp143I	GATC	1 cut(s)	153
BspACI	CCGC	7 cut(s)	17, 20, 105, 132, 234, 237, 282
BspANI	GGCC	2 cut(s)	16, 190
BspLI	GGNNCC	1 cut(s)	437
BspMI	ACCTGC	1 cut(s)	223
BsrDI	GCAATG	1 cut(s)	405
BsrI	ACTGG	3 cut(s)	112, 367, 412
BssMI	GATC	1 cut(s)	153
BssNI	GRCGYC	1 cut(s)	122
Bst4CI	ACNGT	2 cut(s)	395, 443
Bst6I	CTCTTC	2 cut(s)	97, 292
BstACI	GRCGYC	1 cut(s)	122
BstAPI	GCANNNNNTGC	1 cut(s)	260
BstC8I	GCNNGC	1 cut(s)	183
BstKTI	GATC	1 cut(s)	156
BstMAI	GTCTC	1 cut(s)	420
BstMBI	GATC	1 cut(s)	153
BstMCI	CGRYCG	1 cut(s)	17
BstMWI	GCNNNNNNNGC	3 cut(s)	22, 187, 260
BstV1I	GCAGC	2 cut(s)	34, 266
BstX2I	RGATCY	1 cut(s)	153
BstYI	RGATCY	1 cut(s)	153
BstZI	CGGCCG	1 cut(s)	14
BsuRI	GGCC	2 cut(s)	16, 190
BtgZI	GCGATG	1 cut(s)	298
BveI	ACCTGC	1 cut(s)	223
Cac8I	GCNNGC	1 cut(s)	183
CaiI	CAGNNNCTG	1 cut(s)	260
Cfr13I	GGNCC	2 cut(s)	79, 188
CseI	GACGC	1 cut(s)	130
CviAII	CATG	2 cut(s)	204, 427
DpnI	GATC	1 cut(s)	155
DpnII	GATC	1 cut(s)	153
EaeI	YGGCCR	1 cut(s)	14
EagI	CGGCCG	1 cut(s)	14
Eam1104I	CTCTTC	2 cut(s)	97, 292
EarI	CTCTTC	2 cut(s)	97, 292
EciI	GGCGGA	2 cut(s)	121, 223
Ecl136II	GAGCTC	1 cut(s)	54
EclXI	CGGCCG	1 cut(s)	14
Eco24I	GRGCYC	2 cut(s)	56, 438
Eco47I	GGWCC	1 cut(s)	79
Eco52I	CGGCCG	1 cut(s)	14
Eco53kI	GAGCTC	1 cut(s)	54
EcoICRI	GAGCTC	1 cut(s)	54
EcoO109I	RGGNCCY	1 cut(s)	79
EcoT38I	GRGCYC	2 cut(s)	56, 438
FaeI	CATG	2 cut(s)	207, 430
FaiI	YATR	2 cut(s)	205, 428
FaqI	GGGAC	2 cut(s)	28, 100
FatI	CATG	2 cut(s)	203, 426
Fnu4HI	GCNGC	6 cut(s)	17, 20, 23, 105, 237, 255
FriOI	GRGCYC	2 cut(s)	56, 438
Fsp4HI	GCNGC	6 cut(s)	17, 20, 23, 105, 237, 255
FspBI	CTAG	1 cut(s)	32
GluI	GCNGC	6 cut(s)	17, 20, 23, 105, 237, 255
GsaI	CCCAGC	1 cut(s)	189
GsuI	CTGGAG	1 cut(s)	181
HaeIII	GGCC	2 cut(s)	16, 190
HapII	CCGG	1 cut(s)	144
HgaI	GACGC	1 cut(s)	130
Hin1I	GRCGYC	1 cut(s)	122
Hin1II	CATG	2 cut(s)	207, 430
HincII	GTYRAC	1 cut(s)	398
HindII	GTYRAC	1 cut(s)	398
HinfI	GANTC	1 cut(s)	59
HpaII	CCGG	1 cut(s)	144
HphI	GGTGA	2 cut(s)	204, 267
Hpy166II	GTNNAC	1 cut(s)	398
Hpy188I	TCNGA	1 cut(s)	58
Hpy188III	TCNNGA	1 cut(s)	49
Hpy8I	GTNNAC	1 cut(s)	398
Hpy99I	CGWCG	1 cut(s)	124
HpyAV	CCTTC	3 cut(s)	201, 219, 279
HpyCH4III	ACNGT	2 cut(s)	395, 443
HpyCH4V	TGCA	2 cut(s)	165, 254
HpyF10VI	GCNNNNNNNGC	3 cut(s)	22, 187, 260
Hsp92I	GRCGYC	1 cut(s)	122
Hsp92II	CATG	2 cut(s)	207, 430
Kzo9I	GATC	1 cut(s)	153
LmnI	GCTCC	3 cut(s)	59, 236, 441
Lsp1109I	GCAGC	2 cut(s)	34, 266
MaeI	CTAG	1 cut(s)	32
MaeIII	GTNAC	1 cut(s)	373
MalI	GATC	1 cut(s)	155
MboI	GATC	1 cut(s)	153
MboII	GAAGA	2 cut(s)	84, 279
MflI	RGATCY	1 cut(s)	153
MhlI	GDGCHC	2 cut(s)	56, 438
MlyI	GAGTC	1 cut(s)	68
MseI	TTAA	1 cut(s)	342
MspI	CCGG	1 cut(s)	144
MwoI	GCNNNNNNNGC	3 cut(s)	22, 187, 260
NdeII	GATC	1 cut(s)	153
NlaIII	CATG	2 cut(s)	207, 430
NlaIV	GGNNCC	1 cut(s)	437
PaqCI	CACCTGC	1 cut(s)	223
PkrI	GCNGC	6 cut(s)	18, 21, 24, 106, 238, 256
PleI	GAGTC	1 cut(s)	67
PpsI	GAGTC	1 cut(s)	67
PpuMI	RGGWCCY	1 cut(s)	79
Psp124BI	GAGCTC	1 cut(s)	56
Psp5II	RGGWCCY	1 cut(s)	79
PspFI	CCCAGC	1 cut(s)	185
PspN4I	GGNNCC	1 cut(s)	437
PspPI	GGNCC	2 cut(s)	79, 188
PspPPI	RGGWCCY	1 cut(s)	79
PstNI	CAGNNNCTG	1 cut(s)	260
PsuI	RGATCY	1 cut(s)	153
SacI	GAGCTC	1 cut(s)	56
SaqAI	TTAA	1 cut(s)	342
SatI	GCNGC	6 cut(s)	17, 20, 23, 105, 237, 255
Sau3AI	GATC	1 cut(s)	153
Sau96I	GGNCC	2 cut(s)	79, 188
SchI	GAGTC	1 cut(s)	68
SduI	GDGCHC	2 cut(s)	56, 438
SetI	ASST	9 cut(s)	27, 33, 56, 71, 84, 171, 217, 338, 386
SinI	GGWCC	1 cut(s)	79
SmlI	CTYRAG	3 cut(s)	47, 74, 247
SmoI	CTYRAG	3 cut(s)	47, 74, 247
SsiI	CCGC	7 cut(s)	17, 20, 105, 132, 234, 237, 282
SspMI	CTAG	1 cut(s)	32
SstI	GAGCTC	1 cut(s)	56
TaaI	ACNGT	2 cut(s)	395, 443
TaqI	TCGA	1 cut(s)	27
TauI	GCSGC	4 cut(s)	19, 22, 107, 239
Tru1I	TTAA	1 cut(s)	342
Tru9I	TTAA	1 cut(s)	342
TseI	GCWGC	2 cut(s)	22, 254
TspDTI	ATGAA	1 cut(s)	261
VpaK11BI	GGWCC	1 cut(s)	79
XcmI	CCANNNNNNNNNTGG	1 cut(s)	446
XspI	CTAG	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.