Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005359

Physical Location & Seq

Genomic Coordinates Reverse (-)

1917641 .. 1918993

Gene Structure 1353 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G06280.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGAGATTCCGCCGTCACAATCTCCGGCGACTCAACTCCGCCGTACAAAATCCATATCCAACATGACGACTCTAACTCCTCCAGAAGTTCCTTTCGACATAGCTTCAACGCCGCCGTCTTCGTTCGATTACGAGCTCATCTCCGTAAAACCATCCTCTTTCGTAGCTTACACTTCTCTCAGAGATATCATCTCTTCTCCGATTAACTCTTCACTCAATTTACCGTCGATCAACGGTAGCTGCTCTCCTGTTATATCCACCGCCGCCGGAGATATCTCGATTCGTAACCGTCTCGTTAAGCAAGCTGCTTTGTCTTATCTTCAACCAACGGTGCTTACTTCGTCAGATGATTCTGCTGGTTCTCAATTCTTCCGCCGCGTTTGGCTTCACTTATCCGCCGGGTTTCAGTTCTTGCGACGTGTGTTTGATTGGATTTTTCAATCGTTTCGTGTTCCTTTGATTGTCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

156

Amino Acids

17.23

Weight (kDa)

9.64

Isoelectric Point (pI)

72.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52520 AT5G06280 AT5G06280
fragaria_vesca	FvH4_2g15690 FvH4_6g19940
malus_domestica	MD10G1128300.v1.1 MD12G1037000.v1.1 MD14G1036000.v1.1
prunus_persica	Prupe.6G139500_v2.0.a1 Prupe.8G169400_v2.0.a1
pyrus_communis	pycom05g11960 pycom10g10990 pycom11g14540 pycom12g03200
rosa_chinensis	RchiOBHm_Chr3g0488241 RchiOBHm_Chr6g0278991
rosa_laevigata	RLG00000013177
rosa_multiflora	Rmu_sc0002080.1_g000023 Rmu_sc0003852.1_g000009 Rmu_sc0004657.1_g000016
rosa_roxburghii	Rroxscaffold_3G00226150 Rroxscaffold_7G00189250
rosa_rugosa	Rorug06G0120900
rosa_samantha	Rh4AG251600 Rh6BG234700 Rh6DG228500 Rh7BG424900
rosa_wichuraiana	Rw3G018010 Rw6G020120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	378
AciI	CCGC	8 cut(s)	11, 40, 113, 261, 264, 373, 376, 396
AfaI	GTAC	1 cut(s)	46
AflIII	ACRYGT	1 cut(s)	418
AgsI	TTSAA	3 cut(s)	108, 323, 440
AjiI	CACGTC	1 cut(s)	419
AluBI	AGCT	5 cut(s)	104, 136, 167, 240, 305
AluI	AGCT	5 cut(s)	104, 136, 167, 240, 305
Alw21I	GWGCWC	1 cut(s)	138
Alw26I	GTCTC	1 cut(s)	296
ApeKI	GCWGC	2 cut(s)	240, 305
AsuC2I	CCSGG	1 cut(s)	400
BanII	GRGCYC	1 cut(s)	138
BbsI	GAAGAC	1 cut(s)	111
Bbv12I	GWGCWC	1 cut(s)	138
BbvI	GCAGC	2 cut(s)	227, 292
BccI	CCATC	1 cut(s)	160
BceAI	ACGGC	2 cut(s)	27, 100
BcnI	CCSGG	1 cut(s)	400
BcoDI	GTCTC	1 cut(s)	296
BisI	GCNGC	5 cut(s)	113, 241, 264, 306, 376
BlsI	GCNGC	5 cut(s)	114, 242, 265, 307, 377
Bme1390I	CCNGG	1 cut(s)	400
BmgBI	CACGTC	1 cut(s)	419
BmrFI	CCNGG	1 cut(s)	400
BpiI	GAAGAC	1 cut(s)	111
BplI	GAGNNNNNCTC	2 cut(s)	125, 157
BpmI	CTGGAG	1 cut(s)	66
BpuMI	CCSGG	1 cut(s)	400
BsaXI	ACNNNNNCTCC	2 cut(s)	61, 91
BseGI	GGATG	1 cut(s)	152
BseMII	CTCAG	1 cut(s)	193
BseRI	GAGGAG	1 cut(s)	69
BseXI	GCAGC	2 cut(s)	227, 292
Bsh1236I	CGCG	1 cut(s)	378
BsiHKAI	GWGCWC	1 cut(s)	138
BsiSI	CCGG	3 cut(s)	26, 267, 399
BsmAI	GTCTC	1 cut(s)	296
BsmBI	CGTCTC	1 cut(s)	296
Bsp1286I	GDGCHC	1 cut(s)	138
Bsp143I	GATC	1 cut(s)	228
BspACI	CCGC	8 cut(s)	11, 40, 113, 261, 264, 373, 376, 396
BspCNI	CTCAG	1 cut(s)	192
BspFNI	CGCG	1 cut(s)	378
BssMI	GATC	1 cut(s)	228
Bst4CI	ACNGT	4 cut(s)	225, 236, 290, 331
Bst6I	CTCTTC	2 cut(s)	199, 214
BstC8I	GCNNGC	1 cut(s)	303
BstDEI	CTNAG	1 cut(s)	179
BstF5I	GGATG	1 cut(s)	152
BstFNI	CGCG	1 cut(s)	378
BstKTI	GATC	1 cut(s)	231
BstMAI	GTCTC	1 cut(s)	296
BstMBI	GATC	1 cut(s)	228
BstSCI	CCNGG	1 cut(s)	398
BstUI	CGCG	1 cut(s)	378
BstV1I	GCAGC	2 cut(s)	227, 292
BstV2I	GAAGAC	1 cut(s)	111
BtrI	CACGTC	1 cut(s)	419
BtsCI	GGATG	1 cut(s)	152
Cac8I	GCNNGC	1 cut(s)	303
Csp6I	GTAC	1 cut(s)	45
CviAII	CATG	1 cut(s)	64
CviJI	RGCY	6 cut(s)	104, 136, 167, 240, 305, 385
CviKI_1	RGCY	6 cut(s)	104, 136, 167, 240, 305, 385
CviQI	GTAC	1 cut(s)	45
DdeI	CTNAG	1 cut(s)	179
DpnI	GATC	1 cut(s)	230
DpnII	GATC	1 cut(s)	228
Eam1104I	CTCTTC	2 cut(s)	199, 214
EarI	CTCTTC	2 cut(s)	199, 214
EciI	GGCGGA	3 cut(s)	29, 362, 385
Ecl136II	GAGCTC	1 cut(s)	136
Eco24I	GRGCYC	1 cut(s)	138
Eco32I	GATATC	2 cut(s)	187, 274
Eco53kI	GAGCTC	1 cut(s)	136
EcoICRI	GAGCTC	1 cut(s)	136
EcoRV	GATATC	2 cut(s)	187, 274
EcoT38I	GRGCYC	1 cut(s)	138
Esp3I	CGTCTC	1 cut(s)	296
FaeI	CATG	1 cut(s)	67
FaiI	YATR	4 cut(s)	56, 65, 101, 254
FatI	CATG	1 cut(s)	63
Fnu4HI	GCNGC	5 cut(s)	113, 241, 264, 306, 376
FokI	GGATG	1 cut(s)	139
FriOI	GRGCYC	1 cut(s)	138
Fsp4HI	GCNGC	5 cut(s)	113, 241, 264, 306, 376
GluI	GCNGC	5 cut(s)	113, 241, 264, 306, 376
GsuI	CTGGAG	1 cut(s)	66
HapII	CCGG	3 cut(s)	26, 267, 399
Hin1II	CATG	1 cut(s)	67
HinfI	GANTC	5 cut(s)	7, 31, 70, 280, 350
HpaII	CCGG	3 cut(s)	26, 267, 399
Hpy188I	TCNGA	3 cut(s)	182, 201, 346
Hpy188III	TCNNGA	2 cut(s)	83, 277
Hpy99I	CGWCG	2 cut(s)	229, 420
HpyCH4III	ACNGT	4 cut(s)	225, 236, 290, 331
HpyCH4IV	ACGT	1 cut(s)	418
HpyF3I	CTNAG	1 cut(s)	179
HpySE526I	ACGT	1 cut(s)	418
Hsp92II	CATG	1 cut(s)	67
Kzo9I	GATC	1 cut(s)	228
LpnPI	CCDG	6 cut(s)	39, 96, 261, 280, 342, 412
Lsp1109I	GCAGC	2 cut(s)	227, 292
MaeII	ACGT	1 cut(s)	418
MaeIII	GTNAC	2 cut(s)	15, 284
MalI	GATC	1 cut(s)	230
MboI	GATC	1 cut(s)	228
MboII	GAAGA	5 cut(s)	111, 186, 201, 311, 361
MhlI	GDGCHC	1 cut(s)	138
MluCI	AATT	2 cut(s)	217, 365
MlyI	GAGTC	2 cut(s)	25, 64
MmeI	TCCRAC	1 cut(s)	84
MnlI	CCTC	2 cut(s)	90, 166
MseI	TTAA	2 cut(s)	204, 297
MspI	CCGG	3 cut(s)	26, 267, 399
MspR9I	CCNGG	1 cut(s)	400
MvnI	CGCG	1 cut(s)	378
NciI	CCSGG	1 cut(s)	400
NdeII	GATC	1 cut(s)	228
NlaIII	CATG	1 cut(s)	67
NmuCI	GTSAC	1 cut(s)	15
PfeI	GAWTC	3 cut(s)	7, 280, 350
PkrI	GCNGC	5 cut(s)	114, 242, 265, 307, 377
PleI	GAGTC	2 cut(s)	25, 64
PpsI	GAGTC	2 cut(s)	25, 64
Psp124BI	GAGCTC	1 cut(s)	138
RsaI	GTAC	1 cut(s)	46
RsaNI	GTAC	1 cut(s)	45
SacI	GAGCTC	1 cut(s)	138
SaqAI	TTAA	2 cut(s)	204, 297
SatI	GCNGC	5 cut(s)	113, 241, 264, 306, 376
Sau3AI	GATC	1 cut(s)	228
SchI	GAGTC	2 cut(s)	25, 64
ScrFI	CCNGG	1 cut(s)	400
SduI	GDGCHC	1 cut(s)	138
SetI	ASST	6 cut(s)	106, 138, 169, 242, 307, 421
Sse9I	AATT	2 cut(s)	217, 365
SsiI	CCGC	8 cut(s)	11, 40, 113, 261, 264, 373, 376, 396
SstI	GAGCTC	1 cut(s)	138
StyD4I	CCNGG	1 cut(s)	398
TaaI	ACNGT	4 cut(s)	225, 236, 290, 331
TaiI	ACGT	1 cut(s)	421
TaqI	TCGA	4 cut(s)	96, 126, 227, 278
TasI	AATT	2 cut(s)	217, 365
TauI	GCSGC	3 cut(s)	115, 266, 378
TfiI	GAWTC	3 cut(s)	7, 280, 350
Tru1I	TTAA	2 cut(s)	204, 297
Tru9I	TTAA	2 cut(s)	204, 297
TseFI	GTSAC	1 cut(s)	15
TseI	GCWGC	2 cut(s)	240, 305
Tsp45I	GTSAC	1 cut(s)	15
TspGWI	ACGGA	1 cut(s)	133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.