Prupe.6G139500_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0005359
Physical Location & Seq
Reverse (-)
11317653 .. 11318036
384 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G139500.1

Sequence Viewer

Length: 384 bp
ATGGAGTCATCAAATGAACGAAGAAGGTTTTCTTGGACTAAGTTTCGAAGTCAAAGCTTCCCCACAACCAATTCAGAGGTCAATTGTCCTTTGTTAGAATATACTTCGCTCAAGGATCTGATGCCCTCCTCAACAAGACCTCAAACTCGTTCGTCTCCAAAAGCTTTGGCCATGCAATCAGCTTATCAAATCCCAATAAGCAACTTGTTGGTGCAGAAGGCTGCCTGGGCTTACTTGCAGCCCATGCCAGAGCCAAAAGAAGCCGTACCGCGCTTTTCGACTATGCAGCTTTTTGGTAATCTGAAAATCTTCAGCAGAAGTGTTGTTACTGCAATCAGGCGTGTGTTTGGTAGGCTATTAGGAGCAATTCATATTCGTCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

14.58

Weight (kDa)

11.15

Isoelectric Point (pI)

75.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 271
AciI CCGC 1 cut(s) 269
AclWI GGATC 1 cut(s) 123
AcoI YGGCCR 1 cut(s) 168
AcuI CTGAAG 1 cut(s) 295
AfaI GTAC 1 cut(s) 267
AjnI CCWGG 1 cut(s) 224
AjuI GAANNNNNNNTTGG 2 cut(s) 16, 48
AluBI AGCT 4 cut(s) 57, 164, 182, 289
AluI AGCT 4 cut(s) 57, 164, 182, 289
Alw26I GTCTC 1 cut(s) 159
AlwI GGATC 1 cut(s) 123
AoxI GGCC 1 cut(s) 168
ApeKI GCWGC 3 cut(s) 221, 238, 286
Asp700I GAANNNNTTC 2 cut(s) 28, 308
AspLEI GCGC 1 cut(s) 273
AsuII TTCGAA 1 cut(s) 46
BalI TGGCCA 1 cut(s) 170
BarI GAAGNNNNNNTAC 2 cut(s) 310, 342
BbvI GCAGC 3 cut(s) 208, 250, 298
BceAI ACGGC 1 cut(s) 248
BciT130I CCWGG 1 cut(s) 226
BcoDI GTCTC 1 cut(s) 159
BisI GCNGC 3 cut(s) 222, 239, 287
BlsI GCNGC 3 cut(s) 223, 240, 288
Bme1390I CCNGG 1 cut(s) 226
BmrFI CCNGG 1 cut(s) 226
BmsI GCATC 1 cut(s) 111
Bpu14I TTCGAA 1 cut(s) 46
BpuEI CTTGAG 1 cut(s) 95
BsaJI CCNNGG 1 cut(s) 225
BseBI CCWGG 1 cut(s) 226
BseDI CCNNGG 1 cut(s) 225
BseRI GAGGAG 1 cut(s) 118
BseXI GCAGC 3 cut(s) 208, 250, 298
BsgI GTGCAG 1 cut(s) 233
Bsh1236I CGCG 1 cut(s) 271
BshFI GGCC 1 cut(s) 170
BsmAI GTCTC 1 cut(s) 159
BsmBI CGTCTC 1 cut(s) 159
BsnI GGCC 1 cut(s) 170
Bsp119I TTCGAA 1 cut(s) 46
Bsp143I GATC 1 cut(s) 115
BspACI CCGC 1 cut(s) 269
BspANI GGCC 1 cut(s) 170
BspFNI CGCG 1 cut(s) 271
BspPI GGATC 1 cut(s) 123
BspT104I TTCGAA 1 cut(s) 46
BssECI CCNNGG 1 cut(s) 225
BssMI GATC 1 cut(s) 115
Bst2UI CCWGG 1 cut(s) 226
BstAPI GCANNNNNTGC 1 cut(s) 244
BstBI TTCGAA 1 cut(s) 46
BstDEI CTNAG 1 cut(s) 39
BstFNI CGCG 1 cut(s) 271
BstHHI GCGC 1 cut(s) 273
BstKTI GATC 1 cut(s) 118
BstMAI GTCTC 1 cut(s) 159
BstMBI GATC 1 cut(s) 115
BstMWI GCNNNNNNNGC 2 cut(s) 227, 244
BstNI CCWGG 1 cut(s) 226
BstSCI CCNGG 1 cut(s) 224
BstUI CGCG 1 cut(s) 271
BstV1I GCAGC 3 cut(s) 208, 250, 298
BstX2I RGATCY 1 cut(s) 115
BstYI RGATCY 1 cut(s) 115
BsuRI GGCC 1 cut(s) 170
CfoI GCGC 1 cut(s) 273
Csp6I GTAC 1 cut(s) 266
CviAII CATG 2 cut(s) 172, 244
CviQI GTAC 1 cut(s) 266
DdeI CTNAG 1 cut(s) 39
DpnI GATC 1 cut(s) 117
DpnII GATC 1 cut(s) 115
EaeI YGGCCR 1 cut(s) 168
Eco57I CTGAAG 1 cut(s) 295
EcoRII CCWGG 1 cut(s) 224
Esp3I CGTCTC 1 cut(s) 159
FaeI CATG 2 cut(s) 175, 247
FaiI YATR 5 cut(s) 102, 173, 245, 284, 372
FalI AAGNNNNNCTT 2 cut(s) 16, 48
FatI CATG 2 cut(s) 171, 243
Fnu4HI GCNGC 3 cut(s) 222, 239, 287
Fsp4HI GCNGC 3 cut(s) 222, 239, 287
GlaI GCGC 1 cut(s) 272
GluI GCNGC 3 cut(s) 222, 239, 287
HaeIII GGCC 1 cut(s) 170
HhaI GCGC 1 cut(s) 273
Hin1II CATG 2 cut(s) 175, 247
Hin6I GCGC 1 cut(s) 271
HinP1I GCGC 1 cut(s) 271
HindIII AAGCTT 2 cut(s) 55, 162
HinfI GANTC 1 cut(s) 5
Hpy188I TCNGA 3 cut(s) 76, 120, 303
Hpy99I CGWCG 1 cut(s) 381
HpyAV CCTTC 2 cut(s) 18, 211
HpyCH4V TGCA 5 cut(s) 175, 214, 238, 286, 332
HpyF10VI GCNNNNNNNGC 2 cut(s) 227, 244
HpyF3I CTNAG 1 cut(s) 39
Hsp92II CATG 2 cut(s) 175, 247
HspAI GCGC 1 cut(s) 271
Kzo9I GATC 1 cut(s) 115
LmnI GCTCC 1 cut(s) 362
LpnPI CCDG 4 cut(s) 211, 238, 261, 322
Lsp1109I GCAGC 3 cut(s) 208, 250, 298
LweI GCATC 1 cut(s) 111
MaeIII GTNAC 1 cut(s) 325
MalI GATC 1 cut(s) 117
MboI GATC 1 cut(s) 115
MboII GAAGA 2 cut(s) 33, 301
MfeI CAATTG 1 cut(s) 82
MflI RGATCY 1 cut(s) 115
MlsI TGGCCA 1 cut(s) 170
MluCI AATT 3 cut(s) 70, 82, 366
MluNI TGGCCA 1 cut(s) 170
MlyI GAGTC 1 cut(s) 14
MnlI CCTC 4 cut(s) 70, 136, 139, 150
Mox20I TGGCCA 1 cut(s) 170
MroXI GAANNNNTTC 2 cut(s) 28, 308
MscI TGGCCA 1 cut(s) 170
Msp20I TGGCCA 1 cut(s) 170
MspR9I CCNGG 1 cut(s) 226
MunI CAATTG 1 cut(s) 82
MvaI CCWGG 1 cut(s) 226
MvnI CGCG 1 cut(s) 271
MwoI GCNNNNNNNGC 2 cut(s) 227, 244
NdeII GATC 1 cut(s) 115
NlaIII CATG 2 cut(s) 175, 247
NspV TTCGAA 1 cut(s) 46
PdmI GAANNNNTTC 2 cut(s) 28, 308
PkrI GCNGC 3 cut(s) 223, 240, 288
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
Psp6I CCWGG 1 cut(s) 224
PspGI CCWGG 1 cut(s) 224
PsuI RGATCY 1 cut(s) 115
RsaI GTAC 1 cut(s) 267
RsaNI GTAC 1 cut(s) 266
SatI GCNGC 3 cut(s) 222, 239, 287
Sau3AI GATC 1 cut(s) 115
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 1 cut(s) 226
SetI ASST 7 cut(s) 29, 59, 81, 142, 166, 184, 291
SfaNI GCATC 1 cut(s) 111
SfuI TTCGAA 1 cut(s) 46
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
Sse9I AATT 3 cut(s) 70, 82, 366
SsiI CCGC 1 cut(s) 269
StyD4I CCNGG 1 cut(s) 224
TaqI TCGA 2 cut(s) 46, 278
TasI AATT 3 cut(s) 70, 82, 366
TseI GCWGC 3 cut(s) 221, 238, 286
TspDTI ATGAA 2 cut(s) 30, 359
XmnI GAANNNNTTC 2 cut(s) 28, 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.