Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0005359

Physical Location & Seq

Genomic Coordinates Forward (+)

48485984 .. 48486445

Gene Structure 462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG424900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGACGCCACGCCATCGGCCGCCGCAGCTCGACCTAGATCTTCTATCCCTTAAGAGCTCCAAGTCCTACACCTCCCTCAAGGACCTCCTCCTTTCTTCCTCCTTCGCCGCCGTCCAGTCCCCGACGCCCAACTCCGCCACCAACTCCGGCTACGAGATCTCCATCCGCAACCTCTTGGTCAAGCAGGCTGGGCCTACCTCCAGCCCATGTCCTTCACCTGCGACCCACACTTGCTCCGCCGCCTCTGGCTCAAGTGCAGCCCCTGCCTCTCCTTCATCACCCACCGCCTCTTCCCCTTTCTCTCCCAAACCCACCATCGCTTACTTCTTTGCTTCCAGCTCTCTTAACATCTACTTCACTTTTCAAACCCAGTTCGTTACTTTCGGGTTCACACACAGTCAACAACACATTGCCCAGTCTCTCGAACTCATGTTAGGGCTCCACCGTGTCGTCGGTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

153

Amino Acids

16.21

Weight (kDa)

9.34

Isoelectric Point (pI)

66.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52520 AT5G06280 AT5G06280
fragaria_vesca	FvH4_2g15690 FvH4_6g19940
malus_domestica	MD10G1128300.v1.1 MD12G1037000.v1.1 MD14G1036000.v1.1
prunus_persica	Prupe.6G139500_v2.0.a1 Prupe.8G169400_v2.0.a1
pyrus_communis	pycom05g11960 pycom10g10990 pycom11g14540 pycom12g03200
rosa_chinensis	RchiOBHm_Chr3g0488241 RchiOBHm_Chr6g0278991
rosa_laevigata	RLG00000013177
rosa_multiflora	Rmu_sc0002080.1_g000023 Rmu_sc0003852.1_g000009 Rmu_sc0004657.1_g000016
rosa_roxburghii	Rroxscaffold_3G00226150 Rroxscaffold_7G00189250
rosa_rugosa	Rorug06G0120900
rosa_samantha	Rh4AG251600 Rh6BG234700 Rh6DG228500 Rh7BG424900
rosa_wichuraiana	Rw3G018010 Rw6G020120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	226
Acc36I	ACCTGC	1 cut(s)	226
AciI	CCGC	8 cut(s)	20, 23, 108, 135, 166, 237, 240, 285
AcoI	YGGCCR	1 cut(s)	17
AcyI	GRCGYC	2 cut(s)	5, 125
AflII	CTTAAG	1 cut(s)	50
AgsI	TTSAA	1 cut(s)	365
AluBI	AGCT	3 cut(s)	28, 57, 339
AluI	AGCT	3 cut(s)	28, 57, 339
Alw21I	GWGCWC	1 cut(s)	59
Alw26I	GTCTC	1 cut(s)	423
AlwNI	CAGNNNCTG	1 cut(s)	263
AoxI	GGCC	2 cut(s)	17, 191
ApeKI	GCWGC	2 cut(s)	25, 257
AspS9I	GGNCC	2 cut(s)	82, 191
AsuHPI	GGTGA	2 cut(s)	207, 270
AvaII	GGWCC	1 cut(s)	82
BanII	GRGCYC	2 cut(s)	59, 441
Bbv12I	GWGCWC	1 cut(s)	59
BbvI	GCAGC	2 cut(s)	37, 269
BccI	CCATC	3 cut(s)	21, 170, 323
BceAI	ACGGC	1 cut(s)	95
BcoDI	GTCTC	1 cut(s)	423
BfaI	CTAG	1 cut(s)	35
BfrI	CTTAAG	1 cut(s)	50
BfuAI	ACCTGC	1 cut(s)	226
BglII	AGATCT	2 cut(s)	37, 156
BisI	GCNGC	6 cut(s)	20, 23, 26, 108, 240, 258
BlsI	GCNGC	6 cut(s)	21, 24, 27, 109, 241, 259
Bme18I	GGWCC	1 cut(s)	82
BmgT120I	GGNCC	2 cut(s)	82, 191
BmiI	GGNNCC	1 cut(s)	440
BmrI	ACTGGG	2 cut(s)	364, 409
BmuI	ACTGGG	2 cut(s)	364, 409
BpmI	CTGGAG	1 cut(s)	184
BpuEI	CTTGAG	2 cut(s)	62, 235
BsaBI	GATNNNNATC	1 cut(s)	161
BsaHI	GRCGYC	2 cut(s)	5, 125
BsaXI	ACNNNNNCTCC	4 cut(s)	143, 173, 218, 248
Bse1I	ACTGG	3 cut(s)	115, 370, 415
Bse3DI	GCAATG	1 cut(s)	408
Bse8I	GATNNNNATC	1 cut(s)	161
BseGI	GGATG	1 cut(s)	162
BseJI	GATNNNNATC	1 cut(s)	161
BseMI	GCAATG	1 cut(s)	408
BseNI	ACTGG	3 cut(s)	115, 370, 415
BseRI	GAGGAG	1 cut(s)	77
BseX3I	CGGCCG	1 cut(s)	17
BseXI	GCAGC	2 cut(s)	37, 269
BseYI	CCCAGC	1 cut(s)	188
BsgI	GTGCAG	1 cut(s)	276
Bsh1285I	CGRYCG	1 cut(s)	20
BshFI	GGCC	2 cut(s)	19, 193
BsiEI	CGRYCG	1 cut(s)	20
BsiHKAI	GWGCWC	1 cut(s)	59
BsiSI	CCGG	1 cut(s)	147
BslFI	GGGAC	1 cut(s)	103
BsmAI	GTCTC	1 cut(s)	423
BsmFI	GGGAC	1 cut(s)	103
BsnI	GGCC	2 cut(s)	19, 193
Bsp1286I	GDGCHC	2 cut(s)	59, 441
Bsp143I	GATC	2 cut(s)	37, 156
BspACI	CCGC	8 cut(s)	20, 23, 108, 135, 166, 237, 240, 285
BspANI	GGCC	2 cut(s)	19, 193
BspLI	GGNNCC	1 cut(s)	440
BspMI	ACCTGC	1 cut(s)	226
BspTI	CTTAAG	1 cut(s)	50
BsrDI	GCAATG	1 cut(s)	408
BsrI	ACTGG	3 cut(s)	115, 370, 415
BssMI	GATC	2 cut(s)	37, 156
BssNI	GRCGYC	2 cut(s)	5, 125
Bst4CI	ACNGT	2 cut(s)	398, 446
Bst6I	CTCTTC	1 cut(s)	295
BstACI	GRCGYC	2 cut(s)	5, 125
BstAFI	CTTAAG	1 cut(s)	50
BstAPI	GCANNNNNTGC	1 cut(s)	263
BstC8I	GCNNGC	1 cut(s)	186
BstF5I	GGATG	1 cut(s)	162
BstKTI	GATC	2 cut(s)	40, 159
BstMAI	GTCTC	1 cut(s)	423
BstMBI	GATC	2 cut(s)	37, 156
BstMCI	CGRYCG	1 cut(s)	20
BstMWI	GCNNNNNNNGC	3 cut(s)	25, 190, 263
BstV1I	GCAGC	2 cut(s)	37, 269
BstX2I	RGATCY	2 cut(s)	37, 156
BstYI	RGATCY	2 cut(s)	37, 156
BstZI	CGGCCG	1 cut(s)	17
BsuRI	GGCC	2 cut(s)	19, 193
BtgZI	GCGATG	1 cut(s)	301
BtsCI	GGATG	1 cut(s)	162
BveI	ACCTGC	1 cut(s)	226
Cac8I	GCNNGC	1 cut(s)	186
CaiI	CAGNNNCTG	1 cut(s)	263
Cfr13I	GGNCC	2 cut(s)	82, 191
CseI	GACGC	2 cut(s)	13, 133
CviAII	CATG	2 cut(s)	207, 430
DpnI	GATC	2 cut(s)	39, 158
DpnII	GATC	2 cut(s)	37, 156
EaeI	YGGCCR	1 cut(s)	17
EagI	CGGCCG	1 cut(s)	17
Eam1104I	CTCTTC	1 cut(s)	295
EarI	CTCTTC	1 cut(s)	295
EciI	GGCGGA	2 cut(s)	124, 226
Ecl136II	GAGCTC	1 cut(s)	57
EclXI	CGGCCG	1 cut(s)	17
Eco24I	GRGCYC	2 cut(s)	59, 441
Eco47I	GGWCC	1 cut(s)	82
Eco52I	CGGCCG	1 cut(s)	17
Eco53kI	GAGCTC	1 cut(s)	57
EcoICRI	GAGCTC	1 cut(s)	57
EcoO109I	RGGNCCY	1 cut(s)	82
EcoT38I	GRGCYC	2 cut(s)	59, 441
FaeI	CATG	2 cut(s)	210, 433
FaiI	YATR	2 cut(s)	208, 431
FaqI	GGGAC	1 cut(s)	103
FatI	CATG	2 cut(s)	206, 429
Fnu4HI	GCNGC	6 cut(s)	20, 23, 26, 108, 240, 258
FokI	GGATG	1 cut(s)	149
FriOI	GRGCYC	2 cut(s)	59, 441
Fsp4HI	GCNGC	6 cut(s)	20, 23, 26, 108, 240, 258
FspBI	CTAG	1 cut(s)	35
GluI	GCNGC	6 cut(s)	20, 23, 26, 108, 240, 258
GsaI	CCCAGC	1 cut(s)	192
GsuI	CTGGAG	1 cut(s)	184
HaeIII	GGCC	2 cut(s)	19, 193
HapII	CCGG	1 cut(s)	147
HgaI	GACGC	2 cut(s)	13, 133
Hin1I	GRCGYC	2 cut(s)	5, 125
Hin1II	CATG	2 cut(s)	210, 433
HincII	GTYRAC	1 cut(s)	401
HindII	GTYRAC	1 cut(s)	401
HpaII	CCGG	1 cut(s)	147
HphI	GGTGA	2 cut(s)	207, 270
Hpy166II	GTNNAC	2 cut(s)	390, 401
Hpy188III	TCNNGA	1 cut(s)	422
Hpy8I	GTNNAC	2 cut(s)	390, 401
Hpy99I	CGWCG	2 cut(s)	127, 455
HpyAV	CCTTC	3 cut(s)	112, 222, 282
HpyCH4III	ACNGT	2 cut(s)	398, 446
HpyCH4V	TGCA	1 cut(s)	257
HpyF10VI	GCNNNNNNNGC	3 cut(s)	25, 190, 263
Hsp92I	GRCGYC	2 cut(s)	5, 125
Hsp92II	CATG	2 cut(s)	210, 433
Kzo9I	GATC	2 cut(s)	37, 156
LmnI	GCTCC	3 cut(s)	62, 239, 444
Lsp1109I	GCAGC	2 cut(s)	37, 269
MaeI	CTAG	1 cut(s)	35
MaeIII	GTNAC	1 cut(s)	376
MalI	GATC	2 cut(s)	39, 158
MboI	GATC	2 cut(s)	37, 156
MboII	GAAGA	3 cut(s)	32, 87, 282
MflI	RGATCY	2 cut(s)	37, 156
MhlI	GDGCHC	2 cut(s)	59, 441
MseI	TTAA	2 cut(s)	51, 345
MspCI	CTTAAG	1 cut(s)	50
MspI	CCGG	1 cut(s)	147
MwoI	GCNNNNNNNGC	3 cut(s)	25, 190, 263
NdeII	GATC	2 cut(s)	37, 156
NlaIII	CATG	2 cut(s)	210, 433
NlaIV	GGNNCC	1 cut(s)	440
PaqCI	CACCTGC	1 cut(s)	226
PkrI	GCNGC	6 cut(s)	21, 24, 27, 109, 241, 259
PpuMI	RGGWCCY	1 cut(s)	82
Psp124BI	GAGCTC	1 cut(s)	59
Psp5II	RGGWCCY	1 cut(s)	82
PspFI	CCCAGC	1 cut(s)	188
PspN4I	GGNNCC	1 cut(s)	440
PspPI	GGNCC	2 cut(s)	82, 191
PspPPI	RGGWCCY	1 cut(s)	82
PstNI	CAGNNNCTG	1 cut(s)	263
PsuI	RGATCY	2 cut(s)	37, 156
SacI	GAGCTC	1 cut(s)	59
SaqAI	TTAA	2 cut(s)	51, 345
SatI	GCNGC	6 cut(s)	20, 23, 26, 108, 240, 258
Sau3AI	GATC	2 cut(s)	37, 156
Sau96I	GGNCC	2 cut(s)	82, 191
SduI	GDGCHC	2 cut(s)	59, 441
SetI	ASST	9 cut(s)	30, 36, 59, 74, 87, 174, 200, 220, 341
SinI	GGWCC	1 cut(s)	82
SmlI	CTYRAG	3 cut(s)	50, 77, 250
SmoI	CTYRAG	3 cut(s)	50, 77, 250
SsiI	CCGC	8 cut(s)	20, 23, 108, 135, 166, 237, 240, 285
SspMI	CTAG	1 cut(s)	35
SstI	GAGCTC	1 cut(s)	59
TaaI	ACNGT	2 cut(s)	398, 446
TaqI	TCGA	2 cut(s)	30, 423
TaqII	GACCGA	1 cut(s)	443
TauI	GCSGC	4 cut(s)	22, 25, 110, 242
Tru1I	TTAA	2 cut(s)	51, 345
Tru9I	TTAA	2 cut(s)	51, 345
TseI	GCWGC	2 cut(s)	25, 257
TspDTI	ATGAA	1 cut(s)	264
Vha464I	CTTAAG	1 cut(s)	50
VpaK11BI	GGWCC	1 cut(s)	82
XspI	CTAG	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.