AT3G59310

solute carrier family 35 member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0002599
Physical Location & Seq
Reverse (-)
21921746 .. 21924435
2690 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G59310.2

Sequence Viewer

Length: 999 bp
ATGGGTTTCGATTTAAAGGAGATTAGGACGAAGAAGACACTGATTGGTCTTGGTTTGGGACAGCTCCTCTCACTTCTTGCTACTTCTAATGGCTTTACATCTTCTGAGCTCGCCAGAAAAGGAATTAATGTTCCAACATCACAATGCTTTCTGAATTATGTGTTACTGGCAATCGTCTATGGAAGTATCATGCTGTATCGAAGATCCGACATTAAGGCGAAATGGTATTACTATTTCCTCCTTGCTTTTGTTGATGTGGAGGCCAATTTTCTCGTGGTGAAGGCTTACCAATACACTTCATTGACAAGTGTCATGCTACTGGATTGCTGGGCGATCCCTTGCGTTTTGGTCTTGACTTGGTTTTACCTTAAGACAAAATACAGATTGATGAAGATCAGTGGTGTTTTTATCTGTATTGTTGGTGTTTTTATGGTAGTCTTCTCAGACGTCCATGCAGGGGATCGAGCTGGAGGAAGTAATCCTGTTAAAGGAGATTTTCTTGTTTTAGCTGGAGCAACCTTATATGCTGTTAGTAATACCAGCGAGGAGTTCCTTGTGAAGAATGCAGATACAGTTGAGCTGATGACCTTCTTGGGGTTTTTTGGAGCCATTATTAGTGCCATTCAGGTAAGTATACTTGAACGTGATGAGCTTAAAGCTATTCACTGGTCAACTGGAGCTGTTTTTCCGTTCCTTAGATTCACACTCACAATGTTTCTCTTCTACCCATTAGTCCCGGTCTTACTCAAGACCAATGGTGCAACAATGTTCAACCTCTCGTTGCTCACATCAGATATGTGGGCTGTTTTGATCCGCACTTTTGGTTACCACGAGAAGGTTGATTGGCTCTACTTCTTGGCATTTGCTACTACAGCTACTGGACTGATCATATACTCCATGAAGGAGAAAGATCAAGAGGAACACAGATTTGAAGAAGTGGGCGACGAGGCGGCTATGCAGAGGAAGTTGTTAGGTGAGGATGATGAGCCGGGAACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SLC35F

Protein Analysis

332

Amino Acids

37.36

Weight (kDa)

5.88

Isoelectric Point (pI)

16.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SLC35F PF06027 10 - 233 3.2e-105 Solute carrier family 35
EamA PF00892 23 - 146 4.4e-07 EamA-like transporter family
CRT-like PF08627 51 - 212 9.1e-09 CRT-like, chloroquine-resistance transporter-like
SLC35F PF06027 249 - 331 6.5e-30 Solute carrier family 35
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 450
AccI GTMKAC 1 cut(s) 634
AciI CCGC 2 cut(s) 814, 950
AclWI GGATC 4 cut(s) 198, 328, 468, 805
AcyI GRCGYC 1 cut(s) 447
AfiI CCNNNNNNNGG 4 cut(s) 457, 488, 594, 835
AflII CTTAAG 1 cut(s) 368
AgsI TTSAA 3 cut(s) 641, 772, 932
AloI GAACNNNNNNTCC 2 cut(s) 114, 146
AluBI AGCT 9 cut(s) 64, 109, 467, 509, 580, 652, 659, 680, 875
AluI AGCT 9 cut(s) 64, 109, 467, 509, 580, 652, 659, 680, 875
Alw21I GWGCWC 1 cut(s) 111
AlwI GGATC 4 cut(s) 198, 328, 468, 805
AlwNI CAGNNNCTG 1 cut(s) 878
AoxI GGCC 1 cut(s) 261
AseI ATTAAT 1 cut(s) 126
AsuC2I CCSGG 2 cut(s) 737, 990
AsuHPI GGTGA 2 cut(s) 289, 986
BanII GRGCYC 1 cut(s) 111
BauI CACGAG 2 cut(s) 272, 830
BbsI GAAGAC 2 cut(s) 41, 430
Bbv12I GWGCWC 1 cut(s) 111
BclI TGATCA 1 cut(s) 885
BcnI CCSGG 2 cut(s) 737, 990
BfmI CTRYAG 1 cut(s) 870
BfrI CTTAAG 1 cut(s) 368
BisI GCNGC 1 cut(s) 951
BlsI GCNGC 1 cut(s) 952
Bme1390I CCNGG 2 cut(s) 737, 990
BmiI GGNNCC 2 cut(s) 607, 994
BmrFI CCNGG 2 cut(s) 737, 990
BoxI GACNNNNGTC 1 cut(s) 308
BpiI GAAGAC 2 cut(s) 41, 430
BpmI CTGGAG 3 cut(s) 489, 531, 696
BpuEI CTTGAG 1 cut(s) 731
BpuMI CCSGG 2 cut(s) 737, 990
BsaBI GATNNNNATC 1 cut(s) 392
BsaHI GRCGYC 1 cut(s) 447
Bsc4I CCNNNNNNNGG 4 cut(s) 457, 488, 594, 835
Bse1I ACTGG 5 cut(s) 171, 324, 671, 679, 883
Bse8I GATNNNNATC 1 cut(s) 392
BseGI GGATG 1 cut(s) 985
BseJI GATNNNNATC 1 cut(s) 392
BseLI CCNNNNNNNGG 4 cut(s) 457, 488, 594, 835
BseMII CTCAG 2 cut(s) 96, 456
BseNI ACTGG 5 cut(s) 171, 324, 671, 679, 883
BseRI GAGGAG 2 cut(s) 56, 560
BseYI CCCAGC 1 cut(s) 327
BshFI GGCC 1 cut(s) 263
BsiHKAI GWGCWC 1 cut(s) 111
BsiSI CCGG 2 cut(s) 737, 989
BslFI GGGAC 2 cut(s) 72, 719
BslI CCNNNNNNNGG 4 cut(s) 457, 488, 594, 835
BsmFI GGGAC 2 cut(s) 72, 719
BsmI GAATGC 1 cut(s) 568
BsnI GGCC 1 cut(s) 263
Bsp1286I GDGCHC 1 cut(s) 111
Bsp143I GATC 7 cut(s) 203, 333, 393, 460, 810, 885, 910
BspACI CCGC 2 cut(s) 814, 950
BspANI GGCC 1 cut(s) 263
BspCNI CTCAG 2 cut(s) 97, 455
BspLI GGNNCC 2 cut(s) 607, 994
BspPI GGATC 4 cut(s) 198, 328, 468, 805
BspTI CTTAAG 1 cut(s) 368
BsrI ACTGG 5 cut(s) 171, 324, 671, 679, 883
BssMI GATC 7 cut(s) 203, 333, 393, 460, 810, 885, 910
BssNAI GTATAC 1 cut(s) 635
BssNI GRCGYC 1 cut(s) 447
BssSI CACGAG 2 cut(s) 272, 830
Bst1107I GTATAC 1 cut(s) 635
Bst2BI CACGAG 2 cut(s) 272, 830
Bst4CI ACNGT 1 cut(s) 574
Bst6I CTCTTC 1 cut(s) 725
BstACI GRCGYC 1 cut(s) 447
BstAFI CTTAAG 1 cut(s) 368
BstC8I GCNNGC 1 cut(s) 111
BstDEI CTNAG 3 cut(s) 105, 442, 695
BstEII GGTNACC 1 cut(s) 824
BstENI CCTNNNNNAGG 1 cut(s) 486
BstF5I GGATG 1 cut(s) 985
BstKTI GATC 7 cut(s) 206, 336, 396, 463, 813, 888, 913
BstMBI GATC 7 cut(s) 203, 333, 393, 460, 810, 885, 910
BstMWI GCNNNNNNNGC 1 cut(s) 872
BstPAI GACNNNNGTC 1 cut(s) 308
BstPI GGTNACC 1 cut(s) 824
BstSCI CCNGG 2 cut(s) 735, 988
BstSFI CTRYAG 1 cut(s) 870
BstV2I GAAGAC 2 cut(s) 41, 430
BstX2I RGATCY 1 cut(s) 203
BstYI RGATCY 1 cut(s) 203
BstZ17I GTATAC 1 cut(s) 635
BsuRI GGCC 1 cut(s) 263
BtsCI GGATG 1 cut(s) 985
BtsIMutI CAGTG 3 cut(s) 38, 403, 664
Cac8I GCNNGC 1 cut(s) 111
CaiI CAGNNNCTG 1 cut(s) 878
CviAII CATG 4 cut(s) 190, 313, 452, 898
DdeI CTNAG 3 cut(s) 105, 442, 695
DpnI GATC 7 cut(s) 205, 335, 395, 462, 812, 887, 912
DpnII GATC 7 cut(s) 203, 333, 393, 460, 810, 885, 910
DraI TTTAAA 1 cut(s) 15
Eam1104I CTCTTC 1 cut(s) 725
EarI CTCTTC 1 cut(s) 725
Ecl136II GAGCTC 1 cut(s) 109
Eco24I GRGCYC 1 cut(s) 111
Eco53kI GAGCTC 1 cut(s) 109
Eco91I GGTNACC 1 cut(s) 824
EcoICRI GAGCTC 1 cut(s) 109
EcoNI CCTNNNNNAGG 1 cut(s) 486
EcoO65I GGTNACC 1 cut(s) 824
EcoT38I GRGCYC 1 cut(s) 111
FaeI CATG 4 cut(s) 193, 316, 455, 901
FaqI GGGAC 2 cut(s) 72, 719
FatI CATG 4 cut(s) 189, 312, 451, 897
FbaI TGATCA 1 cut(s) 885
FblI GTMKAC 1 cut(s) 634
Fnu4HI GCNGC 1 cut(s) 951
FokI GGATG 1 cut(s) 992
FriOI GRGCYC 1 cut(s) 111
Fsp4HI GCNGC 1 cut(s) 951
GluI GCNGC 1 cut(s) 951
GsaI CCCAGC 1 cut(s) 331
GsuI CTGGAG 3 cut(s) 489, 531, 696
HaeIII GGCC 1 cut(s) 263
HapII CCGG 2 cut(s) 737, 989
Hin1I GRCGYC 1 cut(s) 447
Hin1II CATG 4 cut(s) 193, 316, 455, 901
HincII GTYRAC 1 cut(s) 672
HindII GTYRAC 1 cut(s) 672
HinfI GANTC 1 cut(s) 699
HpaII CCGG 2 cut(s) 737, 989
HphI GGTGA 2 cut(s) 289, 986
Hpy166II GTNNAC 2 cut(s) 635, 672
Hpy188I TCNGA 5 cut(s) 106, 153, 208, 445, 793
Hpy188III TCNNGA 3 cut(s) 352, 748, 914
Hpy8I GTNNAC 2 cut(s) 635, 672
Hpy99I CGWCG 1 cut(s) 947
HpyAV CCTTC 4 cut(s) 274, 598, 829, 895
HpyCH4III ACNGT 1 cut(s) 574
HpyCH4IV ACGT 2 cut(s) 447, 643
HpyCH4V TGCA 4 cut(s) 455, 566, 761, 958
HpyF10VI GCNNNNNNNGC 1 cut(s) 872
HpyF3I CTNAG 3 cut(s) 105, 442, 695
HpySE526I ACGT 2 cut(s) 447, 643
Hsp92I GRCGYC 1 cut(s) 447
Hsp92II CATG 4 cut(s) 193, 316, 455, 901
Ksp22I TGATCA 1 cut(s) 885
Kzo9I GATC 7 cut(s) 203, 333, 393, 460, 810, 885, 910
LmnI GCTCC 4 cut(s) 69, 512, 605, 677
MaeII ACGT 2 cut(s) 447, 643
MaeIII GTNAC 2 cut(s) 162, 824
MalI GATC 7 cut(s) 205, 335, 395, 462, 812, 887, 912
MboI GATC 7 cut(s) 203, 333, 393, 460, 810, 885, 910
MboII GAAGA 9 cut(s) 43, 46, 93, 213, 403, 430, 571, 712, 944
MflI RGATCY 1 cut(s) 203
MhlI GDGCHC 1 cut(s) 111
MluCI AATT 3 cut(s) 123, 154, 265
MmeI TCCRAC 2 cut(s) 158, 231
MseI TTAA 6 cut(s) 14, 126, 213, 369, 486, 654
MslI CAYNNNNRTG 1 cut(s) 142
MspCI CTTAAG 1 cut(s) 368
MspI CCGG 2 cut(s) 737, 989
MspR9I CCNGG 2 cut(s) 737, 990
Mva1269I GAATGC 1 cut(s) 568
MwoI GCNNNNNNNGC 1 cut(s) 872
NciI CCSGG 2 cut(s) 737, 990
NdeII GATC 7 cut(s) 203, 333, 393, 460, 810, 885, 910
NlaIII CATG 4 cut(s) 193, 316, 455, 901
NlaIV GGNNCC 2 cut(s) 607, 994
PctI GAATGC 1 cut(s) 568
PfeI GAWTC 1 cut(s) 699
PkrI GCNGC 1 cut(s) 952
PshAI GACNNNNGTC 1 cut(s) 308
PshBI ATTAAT 1 cut(s) 126
Psp124BI GAGCTC 1 cut(s) 111
PspEI GGTNACC 1 cut(s) 824
PspFI CCCAGC 1 cut(s) 327
PspN4I GGNNCC 2 cut(s) 607, 994
PstNI CAGNNNCTG 1 cut(s) 878
PsuI RGATCY 1 cut(s) 203
RseI CAYNNNNRTG 1 cut(s) 142
SacI GAGCTC 1 cut(s) 111
SaqAI TTAA 6 cut(s) 14, 126, 213, 369, 486, 654
SatI GCNGC 1 cut(s) 951
Sau3AI GATC 7 cut(s) 203, 333, 393, 460, 810, 885, 910
ScrFI CCNGG 2 cut(s) 737, 990
SduI GDGCHC 1 cut(s) 111
SfcI CTRYAG 1 cut(s) 870
SmiMI CAYNNNNRTG 1 cut(s) 142
SmlI CTYRAG 2 cut(s) 368, 746
SmoI CTYRAG 2 cut(s) 368, 746
Sse9I AATT 3 cut(s) 123, 154, 265
SsiI CCGC 2 cut(s) 814, 950
SstI GAGCTC 1 cut(s) 111
StyD4I CCNGG 2 cut(s) 735, 988
TaaI ACNGT 1 cut(s) 574
TaiI ACGT 2 cut(s) 450, 646
TaqI TCGA 3 cut(s) 9, 199, 463
TasI AATT 3 cut(s) 123, 154, 265
TauI GCSGC 1 cut(s) 953
TfiI GAWTC 1 cut(s) 699
Tru1I TTAA 6 cut(s) 14, 126, 213, 369, 486, 654
Tru9I TTAA 6 cut(s) 14, 126, 213, 369, 486, 654
TscAI CASTG 3 cut(s) 45, 403, 671
TspDTI ATGAA 3 cut(s) 288, 404, 914
TspGWI ACGGA 1 cut(s) 678
TspRI CASTG 3 cut(s) 45, 403, 671
Vha464I CTTAAG 1 cut(s) 368
VspI ATTAAT 1 cut(s) 126
XagI CCTNNNNNAGG 1 cut(s) 486
XcmI CCANNNNNNNNNTGG 1 cut(s) 271
XmiI GTMKAC 1 cut(s) 634
ZraI GACGTC 1 cut(s) 448
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.