Rorug03G0129000

Solute carrier family 35

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0002599
Physical Location & Seq
Reverse (-)
10468523 .. 10469356
834 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0129000.1

Sequence Viewer

Length: 675 bp
ATGGCTGGGGAGGACGTGAAGCTGTATGGAACTTGGAGGAGCCCATATAGTCGCAGGGTTGAAATAGCTCTGAAACTCAAAGGTGTCCAACACAAGTACTATGAAGAAGACCTGACCAACAAGAGCCCTTCGCTCCTCAAGTACAACCCGGTTCACAAGAAGATCCCTGTGCTAGTTCATGGTGAGAAAGTAATTTCAGAGTCCCATGTCATTCTCGAGTACATTGACGAGACGTGGAAGGGCTATGACATACTGCCTAAAGATCCTTGTGAAAAGGCCAAGGCACGCTTCTGGGCTACATCGATGAAAAGTGAATTTAACTGTCTTCCTGCGCTAAAGAAAGCTCTCGCGAGTATGGCTGAGGAGCGTGACAAGGCCGTGGAAGAAGCATGTGAGCTTCTACAACTACTTGAAAATGAGCTCAAGCATAAGAAGTACTTTGGAGGAGATTGTATTGGACTGGTGGACATTGTTGCCAACTTCATAAGCCATTGGCTTAAAGTTCTTCAAGACGTTGTGGGAGTGGAGCTGTTAACCATAAAGAAATTTCCCAAGCTATGCGAATGGAGTGAGAACTTTGTCTGCCACCATGCTGTTAAGGAATGTCTGCCTCCTAAAGACAAGCTTCTCGCTTCGTTCCATTCTCACTATGGAAGCGCTACTACTTCTAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SLC35F

Protein Analysis

224

Amino Acids

25.62

Weight (kDa)

8.07

Isoelectric Point (pI)

42.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GST_N PF02798 5 - 77 4.4e-18 Glutathione S-transferase, N-terminal domain
GST_N_3 PF13417 8 - 78 6.8e-17 Glutathione S-transferase, N-terminal domain
GST_N_2 PF13409 14 - 78 1.3e-16 Glutathione S-transferase, N-terminal domain
GST_C PF00043 117 - 193 1.3e-11 Glutathione S-transferase, C-terminal domain
DUF7962 PF25907 117 - 193 2.3e-06 Domain of unknown function (DUF7962)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 350
AclWI GGATC 2 cut(s) 157, 257
AcsI RAATTY 2 cut(s) 314, 545
AfaI GTAC 4 cut(s) 98, 143, 221, 437
AfeI AGCGCT 1 cut(s) 658
AgsI TTSAA 3 cut(s) 62, 413, 509
AjiI CACGTC 2 cut(s) 16, 234
AjuI GAANNNNNNNTTGG 2 cut(s) 272, 304
AluBI AGCT 8 cut(s) 22, 68, 344, 397, 421, 529, 556, 625
AluI AGCT 8 cut(s) 22, 68, 344, 397, 421, 529, 556, 625
Alw21I GWGCWC 1 cut(s) 423
Alw26I GTCTC 1 cut(s) 224
AlwI GGATC 2 cut(s) 157, 257
Ama87I CYCGRG 1 cut(s) 215
Aor51HI AGCGCT 1 cut(s) 658
AoxI GGCC 2 cut(s) 276, 375
ApoI RAATTY 2 cut(s) 314, 545
AspLEI GCGC 2 cut(s) 334, 659
AsuC2I CCSGG 1 cut(s) 149
AsuHPI GGTGA 1 cut(s) 194
AvaI CYCGRG 1 cut(s) 215
BanII GRGCYC 3 cut(s) 44, 128, 423
BarI GAAGNNNNNNTAC 1 cut(s) 646
BbsI GAAGAC 2 cut(s) 114, 317
Bbv12I GWGCWC 1 cut(s) 423
BbvCI CCTCAGC 1 cut(s) 360
BceAI ACGGC 1 cut(s) 362
BcnI CCSGG 1 cut(s) 149
BcoDI GTCTC 1 cut(s) 224
BfaI CTAG 1 cut(s) 173
BfoI RGCGCY 1 cut(s) 660
BmcAI AGTACT 2 cut(s) 98, 437
Bme1390I CCNGG 1 cut(s) 149
BmeT110I CYCGRG 1 cut(s) 215
BmgBI CACGTC 2 cut(s) 16, 234
BmiI GGNNCC 1 cut(s) 41
BmrFI CCNGG 1 cut(s) 149
BpiI GAAGAC 2 cut(s) 114, 317
Bpu10I CCTNAGC 1 cut(s) 360
BpuEI CTTGAG 2 cut(s) 122, 407
BpuMI CCSGG 1 cut(s) 149
Bsa29I ATCGAT 1 cut(s) 302
BsaJI CCNNGG 2 cut(s) 279, 378
Bse1I ACTGG 1 cut(s) 465
BseCI ATCGAT 1 cut(s) 302
BseDI CCNNGG 2 cut(s) 279, 378
BseMII CTCAG 1 cut(s) 351
BseNI ACTGG 1 cut(s) 465
BseRI GAGGAG 4 cut(s) 52, 125, 377, 459
BseYI CCCAGC 1 cut(s) 5
Bsh1236I CGCG 1 cut(s) 350
BshFI GGCC 2 cut(s) 278, 377
BshVI ATCGAT 1 cut(s) 302
BsiHKAI GWGCWC 1 cut(s) 423
BsiHKCI CYCGRG 1 cut(s) 215
BsiSI CCGG 1 cut(s) 149
BslFI GGGAC 1 cut(s) 187
BsmAI GTCTC 1 cut(s) 224
BsmBI CGTCTC 1 cut(s) 224
BsmFI GGGAC 1 cut(s) 187
BsnI GGCC 2 cut(s) 278, 377
BsoBI CYCGRG 1 cut(s) 215
Bsp1286I GDGCHC 3 cut(s) 44, 128, 423
Bsp143I GATC 2 cut(s) 162, 262
Bsp68I TCGCGA 1 cut(s) 350
BspANI GGCC 2 cut(s) 278, 377
BspCNI CTCAG 1 cut(s) 352
BspDI ATCGAT 1 cut(s) 302
BspFNI CGCG 1 cut(s) 350
BspLI GGNNCC 1 cut(s) 41
BspPI GGATC 2 cut(s) 157, 257
BsrI ACTGG 1 cut(s) 465
BssECI CCNNGG 2 cut(s) 279, 378
BssMI GATC 2 cut(s) 162, 262
BssT1I CCWWGG 1 cut(s) 279
Bst4CI ACNGT 1 cut(s) 323
BstC8I GCNNGC 1 cut(s) 286
BstDEI CTNAG 2 cut(s) 360, 669
BstDSI CCRYGG 1 cut(s) 378
BstFNI CGCG 1 cut(s) 350
BstH2I RGCGCY 1 cut(s) 660
BstHHI GCGC 2 cut(s) 334, 659
BstKTI GATC 2 cut(s) 165, 265
BstMAI GTCTC 1 cut(s) 224
BstMBI GATC 2 cut(s) 162, 262
BstMWI GCNNNNNNNGC 1 cut(s) 356
BstNSI RCATGY 1 cut(s) 393
BstSCI CCNGG 1 cut(s) 147
BstUI CGCG 1 cut(s) 350
BstV2I GAAGAC 2 cut(s) 114, 317
BstX2I RGATCY 2 cut(s) 162, 262
BstYI RGATCY 2 cut(s) 162, 262
Bsu15I ATCGAT 1 cut(s) 302
BsuRI GGCC 2 cut(s) 278, 377
BsuTUI ATCGAT 1 cut(s) 302
BtgI CCRYGG 1 cut(s) 378
BtrI CACGTC 2 cut(s) 16, 234
BtuMI TCGCGA 1 cut(s) 350
Cac8I GCNNGC 1 cut(s) 286
CfoI GCGC 2 cut(s) 334, 659
ClaI ATCGAT 1 cut(s) 302
Csp6I GTAC 4 cut(s) 97, 142, 220, 436
CviAII CATG 4 cut(s) 179, 206, 390, 590
CviQI GTAC 4 cut(s) 97, 142, 220, 436
DdeI CTNAG 2 cut(s) 360, 669
DpnI GATC 2 cut(s) 164, 264
DpnII GATC 2 cut(s) 162, 262
Ecl136II GAGCTC 1 cut(s) 421
Eco130I CCWWGG 1 cut(s) 279
Eco24I GRGCYC 3 cut(s) 44, 128, 423
Eco47III AGCGCT 1 cut(s) 658
Eco53kI GAGCTC 1 cut(s) 421
Eco88I CYCGRG 1 cut(s) 215
EcoICRI GAGCTC 1 cut(s) 421
EcoT14I CCWWGG 1 cut(s) 279
EcoT38I GRGCYC 3 cut(s) 44, 128, 423
ErhI CCWWGG 1 cut(s) 279
Esp3I CGTCTC 1 cut(s) 224
FaeI CATG 4 cut(s) 182, 209, 393, 593
FalI AAGNNNNNCTT 6 cut(s) 272, 304, 422, 454, 609, 641
FaqI GGGAC 1 cut(s) 187
FatI CATG 4 cut(s) 178, 205, 389, 589
FriOI GRGCYC 3 cut(s) 44, 128, 423
FspBI CTAG 1 cut(s) 173
GlaI GCGC 2 cut(s) 333, 658
GsaI CCCAGC 1 cut(s) 9
HaeII RGCGCY 1 cut(s) 660
HaeIII GGCC 2 cut(s) 278, 377
HapII CCGG 1 cut(s) 149
HhaI GCGC 2 cut(s) 334, 659
Hin1II CATG 4 cut(s) 182, 209, 393, 593
Hin6I GCGC 2 cut(s) 332, 657
HinP1I GCGC 2 cut(s) 332, 657
HincII GTYRAC 1 cut(s) 534
HindII GTYRAC 1 cut(s) 534
HindIII AAGCTT 1 cut(s) 623
HinfI GANTC 1 cut(s) 200
HpaI GTTAAC 1 cut(s) 534
HpaII CCGG 1 cut(s) 149
HphI GGTGA 1 cut(s) 194
Hpy166II GTNNAC 3 cut(s) 154, 466, 534
Hpy188I TCNGA 2 cut(s) 72, 199
Hpy188III TCNNGA 3 cut(s) 215, 349, 509
Hpy8I GTNNAC 3 cut(s) 154, 466, 534
HpyAV CCTTC 2 cut(s) 138, 232
HpyCH4III ACNGT 1 cut(s) 323
HpyCH4IV ACGT 3 cut(s) 15, 233, 513
HpyF10VI GCNNNNNNNGC 1 cut(s) 356
HpyF3I CTNAG 2 cut(s) 360, 669
HpySE526I ACGT 3 cut(s) 15, 233, 513
Hsp92II CATG 4 cut(s) 182, 209, 393, 593
HspAI GCGC 2 cut(s) 332, 657
KspAI GTTAAC 1 cut(s) 534
Kzo9I GATC 2 cut(s) 162, 262
LmnI GCTCC 4 cut(s) 39, 138, 364, 526
LpnPI CCDG 7 cut(s) 40, 125, 162, 180, 277, 342, 446
MaeI CTAG 1 cut(s) 173
MaeII ACGT 3 cut(s) 15, 233, 513
MaeIII GTNAC 1 cut(s) 368
MalI GATC 2 cut(s) 164, 264
MboI GATC 2 cut(s) 162, 262
MboII GAAGA 6 cut(s) 116, 119, 172, 317, 395, 497
MflI RGATCY 2 cut(s) 162, 262
MhlI GDGCHC 3 cut(s) 44, 128, 423
MluCI AATT 3 cut(s) 192, 314, 545
MlyI GAGTC 1 cut(s) 209
MmeI TCCRAC 1 cut(s) 112
MnlI CCTC 6 cut(s) 4, 30, 146, 355, 437, 621
MseI TTAA 4 cut(s) 318, 498, 533, 597
MspI CCGG 1 cut(s) 149
MspR9I CCNGG 1 cut(s) 149
MvnI CGCG 1 cut(s) 350
MwoI GCNNNNNNNGC 1 cut(s) 356
NciI CCSGG 1 cut(s) 149
NdeII GATC 2 cut(s) 162, 262
NlaIII CATG 4 cut(s) 182, 209, 393, 593
NlaIV GGNNCC 1 cut(s) 41
NmuCI GTSAC 1 cut(s) 368
NruI TCGCGA 1 cut(s) 350
NspI RCATGY 1 cut(s) 393
PaeR7I CTCGAG 1 cut(s) 215
PleI GAGTC 1 cut(s) 208
PpsI GAGTC 1 cut(s) 208
Psp124BI GAGCTC 1 cut(s) 423
PspFI CCCAGC 1 cut(s) 5
PspN4I GGNNCC 1 cut(s) 41
PsuI RGATCY 2 cut(s) 162, 262
RruI TCGCGA 1 cut(s) 350
RsaI GTAC 4 cut(s) 98, 143, 221, 437
RsaNI GTAC 4 cut(s) 97, 142, 220, 436
SacI GAGCTC 1 cut(s) 423
SaqAI TTAA 4 cut(s) 318, 498, 533, 597
Sau3AI GATC 2 cut(s) 162, 262
ScaI AGTACT 2 cut(s) 98, 437
SchI GAGTC 1 cut(s) 209
ScrFI CCNGG 1 cut(s) 149
SduI GDGCHC 3 cut(s) 44, 128, 423
Sfr274I CTCGAG 1 cut(s) 215
SlaI CTCGAG 1 cut(s) 215
SmlI CTYRAG 3 cut(s) 137, 215, 422
SmoI CTYRAG 3 cut(s) 137, 215, 422
Sse9I AATT 3 cut(s) 192, 314, 545
SspMI CTAG 1 cut(s) 173
SstI GAGCTC 1 cut(s) 423
StyD4I CCNGG 1 cut(s) 147
StyI CCWWGG 1 cut(s) 279
TaaI ACNGT 1 cut(s) 323
TaiI ACGT 3 cut(s) 18, 236, 516
TaqI TCGA 2 cut(s) 216, 302
TasI AATT 3 cut(s) 192, 314, 545
TatI WGTACW 4 cut(s) 96, 141, 219, 435
Tru1I TTAA 4 cut(s) 318, 498, 533, 597
Tru9I TTAA 4 cut(s) 318, 498, 533, 597
TseFI GTSAC 1 cut(s) 368
Tsp45I GTSAC 1 cut(s) 368
TspDTI ATGAA 4 cut(s) 117, 167, 320, 472
XapI RAATTY 2 cut(s) 314, 545
XceI RCATGY 1 cut(s) 393
XcmI CCANNNNNNNNNTGG 1 cut(s) 647
XhoI CTCGAG 1 cut(s) 215
XspI CTAG 1 cut(s) 173
ZrmI AGTACT 2 cut(s) 98, 437
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.