Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0002599

Physical Location & Seq

Genomic Coordinates Forward (+)

30982566 .. 30986845

Gene Structure 4280 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00408510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGAGCTTCTTGCCATCATCCGCCTGGTGGAGAAGCCATGTCAACTTGCGAACGCTGTACATGTTGTTCCTGGGTCAGCTCCTCTCCTTCTTTCTCGCACTCATGAGCTTCACTTCATCTCTCATAGCCAATCTCGGTGTGGATACGCCGATTACACAGACCTTGTTCACTTACTTGCTTTTGGCTTTGGTTTATGGAGGAATCTTGCTGCATAGGCGTGAGAAATTACGGGTTTCTTGGTATTGGTATCTTCTCTTGGGGTTTGTGGATGTTCAAGGGAACTATCTTGCCCTCTGTGTGGTTGGGCTTGGCATAGTCCTCCTCTCTGATGCAGGGGTGGCTGGTGGAGGTGGTTCACAACCTCTTCTTGGAGATGTCCTGGTCATAGCAGGAACAATTTTCTTTGCACTGAGCAATGTTGGTGAGGAGTTTTGTGTGAAGAAAAGAGATCGTATTGAAGTAGTATGCATGATTGGTGTATTTGGATTTCTAGTGAGTGTGTGTCAGATATCCATTCTGGAATTAAAGAGTTTGGAATCAGTGGAGTGGTCTACAGATCTTATATTGGCCTTTGTTGGCTATGGATTGGCAGGCTTTATGCTGTACACACTTGGTCCATTCGTTCTTCAGATGAGTGGAGCCACATTGTTCAATCTCTCTATTCTCACATCTGATATGTGGGCTGTGGTTGTTCGCATCTTTATCTACCACCAGGAGGTAGACTGGTTATACTATTTATCATTTGCAATTGTAGTTATCGGACTCATCATTTATTCAGTAATGGAAAAGGAACCTGATCCTGTAACTTCACTTGAGGATGGAAACCCCAGCTACCAAATTCTTGAAGATGAAAGTGCTACATCTAGAAATGAGTCTTTGGCCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SLC35F

Protein Analysis

295

Amino Acids

32.69

Weight (kDa)

4.61

Isoelectric Point (pI)

33.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SLC35F	PF06027	16 - 96	4.9e-18	Solute carrier family 35
SLC35F	PF06027	97 - 260	1.7e-53	Solute carrier family 35

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002599)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59310 AT3G59310 AT3G59310 AT3G59320 AT3G59320 AT3G59340 AT3G59340 AT3G59340 AT3G59340
fragaria_vesca	FvH4_4g11520 FvH4_6g18390
malus_domestica	MD04G1036800.v1.1 MD14G1020100.v1.1
prunus_persica	Prupe.1G186000_v2.0.a1 Prupe.7G113500_v2.0.a1
pyrus_communis	pycom04g02990 pycom14g01970
rosa_chinensis	RchiOBHm_Chr3g0472881 RchiOBHm_Chr4g0408431
rosa_laevigata	RLG00000008651 RLG00000024049
rosa_multiflora	Rmu_co8481489.1_g000001 Rmu_sc0000787.1_g000011
rosa_roxburghii	Rroxscaffold_5G00352900 Rroxscaffold_6G00408510
rosa_rugosa	Rorug03G0128900 Rorug03G0129000 Rorug03G0129100 Rorug04G0085800 Rorug04G0085900
rosa_samantha	Rh3AG181100 Rh3BG207300 Rh3CG204500 Rh3DG168500 Rh4AG150500 Rh4BG147800 Rh4CG157800 Rh4DG143400
rosa_wichuraiana	Rw3G016200 Rw4G012290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	551, 720
AciI	CCGC	1 cut(s)	21
AclWI	GGATC	1 cut(s)	791
AcsI	RAATTY	1 cut(s)	837
AcuI	CTGAAG	1 cut(s)	611
AfaI	GTAC	2 cut(s)	59, 605
AfiI	CCNNNNNNNGG	4 cut(s)	27, 298, 368, 715
AflIII	ACRYGT	1 cut(s)	60
AgsI	TTSAA	4 cut(s)	275, 458, 652, 845
AjnI	CCWGG	4 cut(s)	23, 69, 378, 711
AluBI	AGCT	4 cut(s)	6, 79, 108, 831
AluI	AGCT	4 cut(s)	6, 79, 108, 831
AlwI	GGATC	1 cut(s)	791
AoxI	GGCC	2 cut(s)	567, 879
ApeKI	GCWGC	1 cut(s)	208
ApoI	RAATTY	1 cut(s)	837
AspS9I	GGNCC	1 cut(s)	614
AsuHPI	GGTGA	1 cut(s)	434
AvaII	GGWCC	1 cut(s)	614
BbvI	GCAGC	1 cut(s)	195
BccI	CCATC	2 cut(s)	22, 812
BciT130I	CCWGG	4 cut(s)	25, 71, 380, 713
BciVI	GTATCC	1 cut(s)	136
BfaI	CTAG	2 cut(s)	491, 864
BfmI	CTRYAG	1 cut(s)	552
BfuI	GTATCC	1 cut(s)	136
BglII	AGATCT	1 cut(s)	556
BisI	GCNGC	1 cut(s)	209
BlsI	GCNGC	1 cut(s)	210
Bme1390I	CCNGG	4 cut(s)	25, 71, 380, 713
Bme18I	GGWCC	1 cut(s)	614
BmgT120I	GGNCC	1 cut(s)	614
BmiI	GGNNCC	2 cut(s)	640, 792
BmrFI	CCNGG	4 cut(s)	25, 71, 380, 713
BmsI	GCATC	2 cut(s)	319, 705
BpuEI	CTTGAG	1 cut(s)	833
BsaJI	CCNNGG	1 cut(s)	70
Bsc4I	CCNNNNNNNGG	4 cut(s)	27, 298, 368, 715
Bse1I	ACTGG	1 cut(s)	728
Bse3DI	GCAATG	1 cut(s)	421
BseBI	CCWGG	4 cut(s)	25, 71, 380, 713
BseDI	CCNNGG	1 cut(s)	70
BseGI	GGATG	3 cut(s)	17, 274, 823
BseLI	CCNNNNNNNGG	4 cut(s)	27, 298, 368, 715
BseMI	GCAATG	1 cut(s)	421
BseMII	CTCAG	1 cut(s)	401
BseNI	ACTGG	1 cut(s)	728
BseRI	GAGGAG	3 cut(s)	71, 311, 440
BseXI	GCAGC	1 cut(s)	195
BseYI	CCCAGC	1 cut(s)	827
BshFI	GGCC	2 cut(s)	569, 881
BslI	CCNNNNNNNGG	4 cut(s)	27, 298, 368, 715
BsnI	GGCC	2 cut(s)	569, 881
Bsp1407I	TGTACA	2 cut(s)	57, 603
Bsp143I	GATC	3 cut(s)	448, 556, 796
BspACI	CCGC	1 cut(s)	21
BspANI	GGCC	2 cut(s)	569, 881
BspCNI	CTCAG	1 cut(s)	402
BspHI	TCATGA	2 cut(s)	102, 884
BspLI	GGNNCC	2 cut(s)	640, 792
BspPI	GGATC	1 cut(s)	791
BsrDI	GCAATG	1 cut(s)	421
BsrGI	TGTACA	2 cut(s)	57, 603
BsrI	ACTGG	1 cut(s)	728
BssECI	CCNNGG	1 cut(s)	70
BssMI	GATC	3 cut(s)	448, 556, 796
Bst2UI	CCWGG	4 cut(s)	25, 71, 380, 713
Bst6I	CTCTTC	1 cut(s)	369
BstAUI	TGTACA	2 cut(s)	57, 603
BstC8I	GCNNGC	1 cut(s)	592
BstDEI	CTNAG	1 cut(s)	410
BstF5I	GGATG	3 cut(s)	17, 274, 823
BstKTI	GATC	3 cut(s)	451, 559, 799
BstMBI	GATC	3 cut(s)	448, 556, 796
BstMWI	GCNNNNNNNGC	2 cut(s)	214, 338
BstNI	CCWGG	4 cut(s)	25, 71, 380, 713
BstNSI	RCATGY	1 cut(s)	64
BstSCI	CCNGG	4 cut(s)	23, 69, 378, 711
BstSFI	CTRYAG	1 cut(s)	552
BstV1I	GCAGC	1 cut(s)	195
BstX2I	RGATCY	1 cut(s)	556
BstYI	RGATCY	1 cut(s)	556
BsuI	GTATCC	1 cut(s)	136
BsuRI	GGCC	2 cut(s)	569, 881
BtsCI	GGATG	3 cut(s)	17, 274, 823
BtsIMutI	CAGTG	2 cut(s)	407, 546
Cac8I	GCNNGC	1 cut(s)	592
CciI	TCATGA	2 cut(s)	102, 884
Cfr13I	GGNCC	1 cut(s)	614
Csp6I	GTAC	2 cut(s)	58, 604
CviAII	CATG	5 cut(s)	38, 61, 103, 469, 885
CviQI	GTAC	2 cut(s)	58, 604
DdeI	CTNAG	1 cut(s)	410
DpnI	GATC	3 cut(s)	450, 558, 798
DpnII	GATC	3 cut(s)	448, 556, 796
Eam1104I	CTCTTC	1 cut(s)	369
EarI	CTCTTC	1 cut(s)	369
EciI	GGCGGA	1 cut(s)	10
Eco32I	GATATC	1 cut(s)	510
Eco47I	GGWCC	1 cut(s)	614
Eco57I	CTGAAG	1 cut(s)	611
EcoRII	CCWGG	4 cut(s)	23, 69, 378, 711
EcoRV	GATATC	1 cut(s)	510
EcoT22I	ATGCAT	1 cut(s)	470
FaeI	CATG	5 cut(s)	41, 64, 106, 472, 888
FatI	CATG	5 cut(s)	37, 60, 102, 468, 884
FblI	GTMKAC	2 cut(s)	551, 720
Fnu4HI	GCNGC	1 cut(s)	209
FokI	GGATG	3 cut(s)	4, 281, 830
Fsp4HI	GCNGC	1 cut(s)	209
FspBI	CTAG	2 cut(s)	491, 864
GluI	GCNGC	1 cut(s)	209
GsaI	CCCAGC	1 cut(s)	831
HaeIII	GGCC	2 cut(s)	569, 881
Hin1II	CATG	5 cut(s)	41, 64, 106, 472, 888
HincII	GTYRAC	1 cut(s)	43
HindII	GTYRAC	1 cut(s)	43
HinfI	GANTC	4 cut(s)	201, 536, 762, 872
HphI	GGTGA	1 cut(s)	434
Hpy166II	GTNNAC	6 cut(s)	43, 168, 356, 552, 606, 721
Hpy188I	TCNGA	5 cut(s)	328, 507, 630, 673, 761
Hpy188III	TCNNGA	5 cut(s)	103, 518, 842, 864, 885
Hpy8I	GTNNAC	6 cut(s)	43, 168, 356, 552, 606, 721
HpyAV	CCTTC	1 cut(s)	97
HpyCH4V	TGCA	5 cut(s)	211, 332, 407, 468, 746
HpyF10VI	GCNNNNNNNGC	2 cut(s)	214, 338
HpyF3I	CTNAG	1 cut(s)	410
Hsp92II	CATG	5 cut(s)	41, 64, 106, 472, 888
Kzo9I	GATC	3 cut(s)	448, 556, 796
LmnI	GCTCC	2 cut(s)	84, 638
Lsp1109I	GCAGC	1 cut(s)	195
LweI	GCATC	2 cut(s)	319, 705
MaeI	CTAG	2 cut(s)	491, 864
MaeIII	GTNAC	1 cut(s)	802
MalI	GATC	3 cut(s)	450, 558, 798
MboI	GATC	3 cut(s)	448, 556, 796
MboII	GAAGA	5 cut(s)	242, 356, 451, 617, 857
MfeI	CAATTG	1 cut(s)	747
MflI	RGATCY	1 cut(s)	556
MluCI	AATT	5 cut(s)	224, 396, 521, 747, 837
MlyI	GAGTC	2 cut(s)	756, 881
Mph1103I	ATGCAT	1 cut(s)	470
MseI	TTAA	1 cut(s)	524
MslI	CAYNNNNRTG	1 cut(s)	216
MspR9I	CCNGG	4 cut(s)	25, 71, 380, 713
MunI	CAATTG	1 cut(s)	747
MvaI	CCWGG	4 cut(s)	25, 71, 380, 713
MwoI	GCNNNNNNNGC	2 cut(s)	214, 338
NdeII	GATC	3 cut(s)	448, 556, 796
NlaIII	CATG	5 cut(s)	41, 64, 106, 472, 888
NlaIV	GGNNCC	2 cut(s)	640, 792
NsiI	ATGCAT	1 cut(s)	470
NspI	RCATGY	1 cut(s)	64
PagI	TCATGA	2 cut(s)	102, 884
PciI	ACATGT	1 cut(s)	60
PfeI	GAWTC	2 cut(s)	201, 536
PkrI	GCNGC	1 cut(s)	210
PleI	GAGTC	2 cut(s)	756, 880
PpsI	GAGTC	2 cut(s)	756, 880
PscI	ACATGT	1 cut(s)	60
Psp6I	CCWGG	4 cut(s)	23, 69, 378, 711
PspFI	CCCAGC	1 cut(s)	827
PspGI	CCWGG	4 cut(s)	23, 69, 378, 711
PspN4I	GGNNCC	2 cut(s)	640, 792
PspPI	GGNCC	1 cut(s)	614
PsrI	GAACNNNNNNTAC	2 cut(s)	50, 82
PsuI	RGATCY	1 cut(s)	556
RsaI	GTAC	2 cut(s)	59, 605
RsaNI	GTAC	2 cut(s)	58, 604
RseI	CAYNNNNRTG	1 cut(s)	216
SaqAI	TTAA	1 cut(s)	524
SatI	GCNGC	1 cut(s)	209
Sau3AI	GATC	3 cut(s)	448, 556, 796
Sau96I	GGNCC	1 cut(s)	614
SchI	GAGTC	2 cut(s)	756, 881
ScrFI	CCNGG	4 cut(s)	25, 71, 380, 713
SetI	ASST	9 cut(s)	8, 81, 110, 164, 352, 364, 720, 796, 833
SfaNI	GCATC	2 cut(s)	319, 705
SfcI	CTRYAG	1 cut(s)	552
SinI	GGWCC	1 cut(s)	614
SmiMI	CAYNNNNRTG	1 cut(s)	216
SmlI	CTYRAG	1 cut(s)	812
SmoI	CTYRAG	1 cut(s)	812
Sse9I	AATT	5 cut(s)	224, 396, 521, 747, 837
SsiI	CCGC	1 cut(s)	21
SspMI	CTAG	2 cut(s)	491, 864
StyD4I	CCNGG	4 cut(s)	23, 69, 378, 711
TasI	AATT	5 cut(s)	224, 396, 521, 747, 837
TatI	WGTACW	2 cut(s)	57, 603
TfiI	GAWTC	2 cut(s)	201, 536
Tru1I	TTAA	1 cut(s)	524
Tru9I	TTAA	1 cut(s)	524
TscAI	CASTG	2 cut(s)	414, 546
TseI	GCWGC	1 cut(s)	208
TspDTI	ATGAA	2 cut(s)	105, 864
TspRI	CASTG	2 cut(s)	414, 546
VpaK11BI	GGWCC	1 cut(s)	614
XapI	RAATTY	1 cut(s)	837
XbaI	TCTAGA	1 cut(s)	863
XceI	RCATGY	1 cut(s)	64
XcmI	CCANNNNNNNNNTGG	2 cut(s)	21, 136
XmiI	GTMKAC	2 cut(s)	551, 720
XspI	CTAG	2 cut(s)	491, 864
Zsp2I	ATGCAT	1 cut(s)	470

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.