AT3G59320

solute carrier family 35 member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0002599
Physical Location & Seq
Reverse (-)
21924488 .. 21926895
2408 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G59320.1

Sequence Viewer

Length: 1020 bp
ATGGTCTGTTTCAATTTCAATGAGATGAAGACGAAGAAGACTCTCATTGGACTTGGATTAGGACAGATCATCTCGCTTCTCTCTACTTTAATTGCCTCTATTGCCTCTGAGATCGCCAGAAAAGGGATTAGTGCTCCAACATCTCAGACGTTTCTGGGTTATGTGTCACTTGCAATCGTCTATGGAGGTATCATGCTGTATCGAAGATCCGCAATTAAAGTGAAGTGGTATCACTATTTTCTCCTTGCTGTTGTTGATGTGGAGGCGAACTTTCTCGTTGTCAAGGCATTTCAGAACACATCGATGACTAGTATCATGCTACTGGATTGCTGGGCGATCCCTTGCGTTTTGGTCTTGACTTGGGTTTTCCTGAAAACAAGATACAGATTGATGAAGATCAGTGGTGTTGTTATCTGTATTGTTGGTGTCGTCATGGTAGTTTTCTCAGACGTCCATGCAGGGGATCGAGCTGGTGGAAGTAATCCTGTCAAAGGAGATTTTCTTGTTATAGCTGGAGCTACCTTGTATGCTGTCAGTAATGTCACTGAGGAGTTCCTAGTGAAGAATGCAGACGTGACTGAGCTCATGGCTTTTTTGGGCCTTTTCGGCGCAATTATTGCTGCCATTCAGATAAGCATATTTGAACGTGGTGCAGTCAGAGCTATTCAGTGGTCAACTGAGGCGATTTTACTTTACATTGGAGGCGCACTCGGGTTATTTCTGTTTTACACATTAATCACAATCTTAATCAAGAATAATGGTTCAACAATGTTCAACCTCTCGTTGCTCACATCAGACATGTGGGCTATTTTGATCCGCACTTTTGGTTACCACGAAAAGGTTGATTGGCTCTACTTCTTGGCATTTGCTACTACAGCTACTGGACTGATCATATACTCAATGAAGGAGAAAGATGAGGAGGAACAAAGAAGTGGAGAAGTGGTAAGTGAGAGGAGGAAGCTGTTCGATGAGGAGGATGGTGACTCGCTCCACAGCAACCTTATAGATGCTTCCACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SLC35F

Protein Analysis

339

Amino Acids

37.5

Weight (kDa)

6.13

Isoelectric Point (pI)

21.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SLC35F PF06027 10 - 301 7.4e-143 Solute carrier family 35
EamA PF00892 21 - 147 9.3e-08 EamA-like transporter family
CRT-like PF08627 73 - 216 5.1e-11 CRT-like, chloroquine-resistance transporter-like
EamA PF00892 164 - 300 2e-07 EamA-like transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 453
AciI CCGC 2 cut(s) 210, 817
AclWI GGATC 4 cut(s) 201, 331, 471, 808
AcyI GRCGYC 1 cut(s) 450
AfiI CCNNNNNNNGG 4 cut(s) 123, 460, 491, 838
AflIII ACRYGT 1 cut(s) 798
AgsI TTSAA 5 cut(s) 13, 19, 644, 765, 775
AhlI ACTAGT 1 cut(s) 308
AjiI CACGTC 1 cut(s) 574
AluBI AGCT 7 cut(s) 470, 512, 518, 583, 662, 878, 961
AluI AGCT 7 cut(s) 470, 512, 518, 583, 662, 878, 961
Alw21I GWGCWC 2 cut(s) 136, 585
AlwI GGATC 4 cut(s) 201, 331, 471, 808
AlwNI CAGNNNCTG 1 cut(s) 881
Ama87I CYCGRG 1 cut(s) 710
AoxI GGCC 1 cut(s) 598
ApeKI GCWGC 1 cut(s) 620
AseI ATTAAT 1 cut(s) 734
Asp700I GAANNNNTTC 1 cut(s) 962
AspLEI GCGC 2 cut(s) 611, 707
AspS9I GGNCC 1 cut(s) 598
AsuHPI GGTGA 1 cut(s) 992
AvaI CYCGRG 1 cut(s) 710
BanII GRGCYC 1 cut(s) 585
BbsI GAAGAC 2 cut(s) 35, 44
Bbv12I GWGCWC 2 cut(s) 136, 585
BbvI GCAGC 1 cut(s) 607
BccI CCATC 1 cut(s) 971
BclI TGATCA 1 cut(s) 888
BcuI ACTAGT 1 cut(s) 308
BfaI CTAG 2 cut(s) 309, 557
BfmI CTRYAG 1 cut(s) 873
BglI GCCNNNNNGGC 1 cut(s) 606
BisI GCNGC 1 cut(s) 621
BlsI GCNGC 1 cut(s) 622
BmeT110I CYCGRG 1 cut(s) 710
BmgBI CACGTC 1 cut(s) 574
BmgT120I GGNCC 1 cut(s) 598
BmsI GCATC 1 cut(s) 997
BpiI GAAGAC 2 cut(s) 35, 44
BplI GAGNNNNNCTC 2 cut(s) 693, 725
BpmI CTGGAG 1 cut(s) 534
Bsa29I ATCGAT 1 cut(s) 302
BsaBI GATNNNNATC 1 cut(s) 395
BsaHI GRCGYC 1 cut(s) 450
BsaXI ACNNNNNCTCC 2 cut(s) 927, 957
Bsc4I CCNNNNNNNGG 4 cut(s) 123, 460, 491, 838
Bse1I ACTGG 2 cut(s) 327, 886
Bse8I GATNNNNATC 1 cut(s) 395
BseCI ATCGAT 1 cut(s) 302
BseGI GGATG 1 cut(s) 982
BseJI GATNNNNATC 1 cut(s) 395
BseLI CCNNNNNNNGG 4 cut(s) 123, 460, 491, 838
BseMII CTCAG 6 cut(s) 99, 158, 459, 537, 570, 669
BseNI ACTGG 2 cut(s) 327, 886
BseRI GAGGAG 4 cut(s) 563, 932, 967, 986
BseXI GCAGC 1 cut(s) 607
BseYI CCCAGC 1 cut(s) 330
BsgI GTGCAG 1 cut(s) 672
BshFI GGCC 1 cut(s) 600
BshVI ATCGAT 1 cut(s) 302
BsiHKAI GWGCWC 2 cut(s) 136, 585
BsiHKCI CYCGRG 1 cut(s) 710
BslI CCNNNNNNNGG 4 cut(s) 123, 460, 491, 838
BsmI GAATGC 1 cut(s) 571
BsnI GGCC 1 cut(s) 600
BsoBI CYCGRG 1 cut(s) 710
Bsp1286I GDGCHC 2 cut(s) 136, 585
Bsp143I GATC 8 cut(s) 66, 111, 206, 336, 396, 463, 813, 888
BspACI CCGC 2 cut(s) 210, 817
BspANI GGCC 1 cut(s) 600
BspCNI CTCAG 6 cut(s) 100, 157, 458, 538, 571, 670
BspDI ATCGAT 1 cut(s) 302
BspPI GGATC 4 cut(s) 201, 331, 471, 808
BsrI ACTGG 2 cut(s) 327, 886
BssMI GATC 8 cut(s) 66, 111, 206, 336, 396, 463, 813, 888
BssNI GRCGYC 1 cut(s) 450
BstACI GRCGYC 1 cut(s) 450
BstAPI GCANNNNNTGC 1 cut(s) 617
BstDEI CTNAG 6 cut(s) 108, 144, 445, 546, 579, 678
BstEII GGTNACC 1 cut(s) 827
BstENI CCTNNNNNAGG 1 cut(s) 489
BstF5I GGATG 1 cut(s) 982
BstHHI GCGC 2 cut(s) 611, 707
BstKTI GATC 8 cut(s) 69, 114, 209, 339, 399, 466, 816, 891
BstMBI GATC 8 cut(s) 66, 111, 206, 336, 396, 463, 813, 888
BstMWI GCNNNNNNNGC 5 cut(s) 101, 606, 617, 659, 875
BstNSI RCATGY 1 cut(s) 802
BstPI GGTNACC 1 cut(s) 827
BstSFI CTRYAG 1 cut(s) 873
BstV1I GCAGC 1 cut(s) 607
BstV2I GAAGAC 2 cut(s) 35, 44
BstX2I RGATCY 1 cut(s) 206
BstYI RGATCY 1 cut(s) 206
Bsu15I ATCGAT 1 cut(s) 302
BsuRI GGCC 1 cut(s) 600
BsuTUI ATCGAT 1 cut(s) 302
BtrI CACGTC 1 cut(s) 574
BtsCI GGATG 1 cut(s) 982
BtsIMutI CAGTG 3 cut(s) 406, 543, 674
CaiI CAGNNNCTG 1 cut(s) 881
CfoI GCGC 2 cut(s) 611, 707
Cfr13I GGNCC 1 cut(s) 598
ClaI ATCGAT 1 cut(s) 302
CviAII CATG 6 cut(s) 193, 316, 433, 455, 586, 799
DdeI CTNAG 6 cut(s) 108, 144, 445, 546, 579, 678
DpnI GATC 8 cut(s) 68, 113, 208, 338, 398, 465, 815, 890
DpnII GATC 8 cut(s) 66, 111, 206, 336, 396, 463, 813, 888
Ecl136II GAGCTC 1 cut(s) 583
Eco24I GRGCYC 1 cut(s) 585
Eco53kI GAGCTC 1 cut(s) 583
Eco88I CYCGRG 1 cut(s) 710
Eco91I GGTNACC 1 cut(s) 827
EcoICRI GAGCTC 1 cut(s) 583
EcoNI CCTNNNNNAGG 1 cut(s) 489
EcoO65I GGTNACC 1 cut(s) 827
EcoT38I GRGCYC 1 cut(s) 585
FaeI CATG 6 cut(s) 196, 319, 436, 458, 589, 802
FatI CATG 6 cut(s) 192, 315, 432, 454, 585, 798
FbaI TGATCA 1 cut(s) 888
Fnu4HI GCNGC 1 cut(s) 621
FokI GGATG 1 cut(s) 989
FriOI GRGCYC 1 cut(s) 585
Fsp4HI GCNGC 1 cut(s) 621
FspBI CTAG 2 cut(s) 309, 557
GlaI GCGC 2 cut(s) 610, 706
GluI GCNGC 1 cut(s) 621
GsaI CCCAGC 1 cut(s) 334
GsuI CTGGAG 1 cut(s) 534
HaeIII GGCC 1 cut(s) 600
HhaI GCGC 2 cut(s) 611, 707
Hin1I GRCGYC 1 cut(s) 450
Hin1II CATG 6 cut(s) 196, 319, 436, 458, 589, 802
Hin6I GCGC 2 cut(s) 609, 705
HinP1I GCGC 2 cut(s) 609, 705
HincII GTYRAC 1 cut(s) 675
HindII GTYRAC 1 cut(s) 675
HinfI GANTC 2 cut(s) 40, 983
HphI GGTGA 1 cut(s) 992
Hpy166II GTNNAC 1 cut(s) 675
Hpy188I TCNGA 7 cut(s) 109, 147, 294, 448, 630, 659, 796
Hpy188III TCNNGA 3 cut(s) 355, 370, 751
Hpy8I GTNNAC 1 cut(s) 675
HpyAV CCTTC 1 cut(s) 898
HpyCH4IV ACGT 4 cut(s) 149, 450, 573, 646
HpyCH4V TGCA 4 cut(s) 173, 458, 569, 653
HpyF10VI GCNNNNNNNGC 5 cut(s) 101, 606, 617, 659, 875
HpyF3I CTNAG 6 cut(s) 108, 144, 445, 546, 579, 678
HpySE526I ACGT 4 cut(s) 149, 450, 573, 646
Hsp92I GRCGYC 1 cut(s) 450
Hsp92II CATG 6 cut(s) 196, 319, 436, 458, 589, 802
HspAI GCGC 2 cut(s) 609, 705
Ksp22I TGATCA 1 cut(s) 888
Kzo9I GATC 8 cut(s) 66, 111, 206, 336, 396, 463, 813, 888
LmnI GCTCC 3 cut(s) 139, 515, 993
Lsp1109I GCAGC 1 cut(s) 607
LweI GCATC 1 cut(s) 997
MaeI CTAG 2 cut(s) 309, 557
MaeII ACGT 4 cut(s) 149, 450, 573, 646
MaeIII GTNAC 5 cut(s) 165, 541, 574, 827, 980
MalI GATC 8 cut(s) 68, 113, 208, 338, 398, 465, 815, 890
MboI GATC 8 cut(s) 66, 111, 206, 336, 396, 463, 813, 888
MboII GAAGA 6 cut(s) 40, 46, 49, 216, 406, 574
MflI RGATCY 1 cut(s) 206
MhlI GDGCHC 2 cut(s) 136, 585
MluCI AATT 4 cut(s) 13, 90, 213, 612
MlyI GAGTC 2 cut(s) 34, 977
MmeI TCCRAC 1 cut(s) 161
MroXI GAANNNNTTC 1 cut(s) 962
MseI TTAA 4 cut(s) 89, 216, 734, 746
MslI CAYNNNNRTG 1 cut(s) 302
Mva1269I GAATGC 1 cut(s) 571
MwoI GCNNNNNNNGC 5 cut(s) 101, 606, 617, 659, 875
NdeII GATC 8 cut(s) 66, 111, 206, 336, 396, 463, 813, 888
NlaIII CATG 6 cut(s) 196, 319, 436, 458, 589, 802
NmuCI GTSAC 4 cut(s) 165, 541, 574, 980
NspI RCATGY 1 cut(s) 802
PciI ACATGT 1 cut(s) 798
PctI GAATGC 1 cut(s) 571
PdmI GAANNNNTTC 1 cut(s) 962
PkrI GCNGC 1 cut(s) 622
PleI GAGTC 2 cut(s) 34, 977
PpsI GAGTC 2 cut(s) 34, 977
PscI ACATGT 1 cut(s) 798
PshBI ATTAAT 1 cut(s) 734
Psp124BI GAGCTC 1 cut(s) 585
PspEI GGTNACC 1 cut(s) 827
PspFI CCCAGC 1 cut(s) 330
PspPI GGNCC 1 cut(s) 598
PstNI CAGNNNCTG 1 cut(s) 881
PsuI RGATCY 1 cut(s) 206
RseI CAYNNNNRTG 1 cut(s) 302
SacI GAGCTC 1 cut(s) 585
SaqAI TTAA 4 cut(s) 89, 216, 734, 746
SatI GCNGC 1 cut(s) 621
Sau3AI GATC 8 cut(s) 66, 111, 206, 336, 396, 463, 813, 888
Sau96I GGNCC 1 cut(s) 598
SchI GAGTC 2 cut(s) 34, 977
SduI GDGCHC 2 cut(s) 136, 585
SfaNI GCATC 1 cut(s) 997
SfcI CTRYAG 1 cut(s) 873
SmiMI CAYNNNNRTG 1 cut(s) 302
SpeI ACTAGT 1 cut(s) 308
Sse9I AATT 4 cut(s) 13, 90, 213, 612
SsiI CCGC 2 cut(s) 210, 817
SspMI CTAG 2 cut(s) 309, 557
SstI GAGCTC 1 cut(s) 585
TaiI ACGT 4 cut(s) 152, 453, 576, 649
TaqI TCGA 4 cut(s) 202, 302, 466, 966
TasI AATT 4 cut(s) 13, 90, 213, 612
Tru1I TTAA 4 cut(s) 89, 216, 734, 746
Tru9I TTAA 4 cut(s) 89, 216, 734, 746
TscAI CASTG 3 cut(s) 406, 550, 674
TseFI GTSAC 4 cut(s) 165, 541, 574, 980
TseI GCWGC 1 cut(s) 620
Tsp45I GTSAC 4 cut(s) 165, 541, 574, 980
TspDTI ATGAA 3 cut(s) 41, 407, 917
TspRI CASTG 3 cut(s) 406, 550, 674
VspI ATTAAT 1 cut(s) 734
XagI CCTNNNNNAGG 1 cut(s) 489
XceI RCATGY 1 cut(s) 802
XmnI GAANNNNTTC 1 cut(s) 962
XspI CTAG 2 cut(s) 309, 557
ZraI GACGTC 1 cut(s) 451
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.