Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0002599

Physical Location & Seq

Genomic Coordinates Forward (+)

2763867 .. 2768774

Gene Structure 4908 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g02990.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGCTTTACCGAAGGAAGCCACTTAAGGCTAAATGGTATTACTATGTGCTTCTGGGAATAGTGGACGTGGAGGCAAATTTTCTAGTGGTGAAGGCTTATCAATACACATCTATAACAAGCGTAATGCTGCTGGATTGTTGGTCTATCCCATGCGTTATGCTTCTTACTTGGCTTTTCTTAAAAACAAAATATAGATTCGCGAAGATAACTGGTGTGGTGGTTTGTGTTGCTGGGCTAGTCATGGTTGTTTTTTCAGATGTTCATGCAGGTGATCGAGCAGGAGGGAGCAAGCCCAGTGTAGGAGATGCCCTAGTAATTGCTGGTGCTACGCTGTATGCTGTCAGTAATGTCAGTGAGGAGTTTCTAGTAAAGAATGCCGACAGGGTTGAACTTATGTCCATGCTGGGCTTGTTTGGTGCCTTCGTCAGTGCTATCCAAATGAGCATACTGGAGCGCCATGAGCTCAAATCCATTCACTGGTCGTCTGGGGCAGTACTTCCTTTTGTTGGATTTTCAGTGGCTATGTTCCTGTTTTACTCATTTGTCCCAGTCTTACTGAAGGCTAATGGATCCACAATGTTAAACCTCTCGTTGCTGACCTCAGACATGTGGGCAGTGTTAATTCGCATTTTTGCATACCATGAGAAGGTTGATTGGATGTACTTCGTGGCCTTTGCTGCCGTTTGTGTTGGGCTTGTTATTTATTCGGGGGGTGAAGAAGAGGATCAACGCCCTGCAGATGTTGCGGATGAAGATGCAGTGCGAAGCAAACATTTTGACGAGGAAGCTGGTCCAGTAGGTCGAGGAACAGGGGCCGGGACCTCAAAATCTGGGGATAGCAGCAGGCATGAAACTGTTACTGGTAGCAGTACAGAAAGGGAAGTAGCTGACAACAAGAGCATAGGAAAATATGTACAAGGGAGGAAATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SLC35F

Protein Analysis

311

Amino Acids

34.04

Weight (kDa)

6.6

Isoelectric Point (pI)

25.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002599)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59310 AT3G59310 AT3G59310 AT3G59320 AT3G59320 AT3G59340 AT3G59340 AT3G59340 AT3G59340
fragaria_vesca	FvH4_4g11520 FvH4_6g18390
malus_domestica	MD04G1036800.v1.1 MD14G1020100.v1.1
prunus_persica	Prupe.1G186000_v2.0.a1 Prupe.7G113500_v2.0.a1
pyrus_communis	pycom04g02990 pycom14g01970
rosa_chinensis	RchiOBHm_Chr3g0472881 RchiOBHm_Chr4g0408431
rosa_laevigata	RLG00000008651 RLG00000024049
rosa_multiflora	Rmu_co8481489.1_g000001 Rmu_sc0000787.1_g000011
rosa_roxburghii	Rroxscaffold_5G00352900 Rroxscaffold_6G00408510
rosa_rugosa	Rorug03G0128900 Rorug03G0129000 Rorug03G0129100 Rorug04G0085800 Rorug04G0085900
rosa_samantha	Rh3AG181100 Rh3BG207300 Rh3CG204500 Rh3DG168500 Rh4AG150500 Rh4BG147800 Rh4CG157800 Rh4DG143400
rosa_wichuraiana	Rw3G016200 Rw4G012290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	257
Acc36I	ACCTGC	1 cut(s)	257
AccB1I	GGYRCC	1 cut(s)	416
AccB7I	CCANNNNNTGG	1 cut(s)	477
AccII	CGCG	1 cut(s)	200
AciI	CCGC	1 cut(s)	746
AclWI	GGATC	3 cut(s)	564, 577, 732
AcsI	RAATTY	1 cut(s)	76
AcuI	CTGAAG	1 cut(s)	578
AfaI	GTAC	4 cut(s)	495, 662, 871, 915
AfiI	CCNNNNNNNGG	4 cut(s)	299, 477, 506, 646
AflII	CTTAAG	1 cut(s)	23
AflIII	ACRYGT	1 cut(s)	606
AgsI	TTSAA	1 cut(s)	389
AjiI	CACGTC	1 cut(s)	67
AluBI	AGCT	3 cut(s)	463, 788, 887
AluI	AGCT	3 cut(s)	463, 788, 887
Alw21I	GWGCWC	1 cut(s)	465
AlwI	GGATC	3 cut(s)	564, 577, 732
AoxI	GGCC	2 cut(s)	669, 813
ApeKI	GCWGC	3 cut(s)	127, 677, 840
ApoI	RAATTY	1 cut(s)	76
AspLEI	GCGC	1 cut(s)	456
AspS9I	GGNCC	3 cut(s)	791, 813, 819
AsuC2I	CCSGG	1 cut(s)	817
AsuHPI	GGTGA	3 cut(s)	100, 281, 725
AvaII	GGWCC	2 cut(s)	791, 819
BamHI	GGATCC	1 cut(s)	569
BanI	GGYRCC	1 cut(s)	416
BanII	GRGCYC	1 cut(s)	465
Bbv12I	GWGCWC	1 cut(s)	465
BbvI	GCAGC	3 cut(s)	114, 664, 852
BceAI	ACGGC	1 cut(s)	665
BcnI	CCSGG	1 cut(s)	817
BfaI	CTAG	4 cut(s)	83, 236, 311, 365
BfmI	CTRYAG	1 cut(s)	735
BfoI	RGCGCY	1 cut(s)	457
BfrI	CTTAAG	1 cut(s)	23
BfuAI	ACCTGC	1 cut(s)	257
BisI	GCNGC	3 cut(s)	128, 678, 841
BlsI	GCNGC	3 cut(s)	129, 679, 842
BmcAI	AGTACT	1 cut(s)	495
Bme1390I	CCNGG	1 cut(s)	817
Bme18I	GGWCC	2 cut(s)	791, 819
BmgBI	CACGTC	1 cut(s)	67
BmgT120I	GGNCC	3 cut(s)	791, 813, 819
BmiI	GGNNCC	4 cut(s)	418, 571, 814, 820
BmrFI	CCNGG	1 cut(s)	817
BmrI	ACTGGG	2 cut(s)	288, 542
BmsI	GCATC	2 cut(s)	295, 745
BmuI	ACTGGG	2 cut(s)	288, 542
BpmI	CTGGAG	1 cut(s)	470
BpuMI	CCSGG	1 cut(s)	817
Bsc4I	CCNNNNNNNGG	4 cut(s)	299, 477, 506, 646
Bse1I	ACTGG	7 cut(s)	214, 294, 453, 482, 548, 794, 865
BseGI	GGATG	2 cut(s)	663, 754
BseLI	CCNNNNNNNGG	4 cut(s)	299, 477, 506, 646
BseMII	CTCAG	1 cut(s)	615
BseNI	ACTGG	7 cut(s)	214, 294, 453, 482, 548, 794, 865
BseRI	GAGGAG	1 cut(s)	371
BseXI	GCAGC	3 cut(s)	114, 664, 852
BseYI	CCCAGC	2 cut(s)	230, 403
Bsh1236I	CGCG	1 cut(s)	200
BshFI	GGCC	2 cut(s)	671, 815
BshNI	GGYRCC	1 cut(s)	416
BsiHKAI	GWGCWC	1 cut(s)	465
BsiSI	CCGG	1 cut(s)	816
BslFI	GGGAC	2 cut(s)	530, 832
BslI	CCNNNNNNNGG	4 cut(s)	299, 477, 506, 646
BsmFI	GGGAC	2 cut(s)	530, 832
BsmI	GAATGC	1 cut(s)	379
BsnI	GGCC	2 cut(s)	671, 815
Bsp1286I	GDGCHC	1 cut(s)	465
Bsp1407I	TGTACA	1 cut(s)	913
Bsp143I	GATC	3 cut(s)	271, 569, 724
Bsp68I	TCGCGA	1 cut(s)	200
BspACI	CCGC	1 cut(s)	746
BspANI	GGCC	2 cut(s)	671, 815
BspCNI	CTCAG	1 cut(s)	614
BspFNI	CGCG	1 cut(s)	200
BspHI	TCATGA	1 cut(s)	929
BspLI	GGNNCC	4 cut(s)	418, 571, 814, 820
BspMAI	CTGCAG	1 cut(s)	739
BspMI	ACCTGC	1 cut(s)	257
BspPI	GGATC	3 cut(s)	564, 577, 732
BspT107I	GGYRCC	1 cut(s)	416
BspTI	CTTAAG	1 cut(s)	23
BsrGI	TGTACA	1 cut(s)	913
BsrI	ACTGG	7 cut(s)	214, 294, 453, 482, 548, 794, 865
BssMI	GATC	3 cut(s)	271, 569, 724
Bst4CI	ACNGT	1 cut(s)	856
Bst6I	CTCTTC	1 cut(s)	714
BstAFI	CTTAAG	1 cut(s)	23
BstAPI	GCANNNNNTGC	1 cut(s)	743
BstAUI	TGTACA	1 cut(s)	913
BstC8I	GCNNGC	2 cut(s)	290, 845
BstDEI	CTNAG	1 cut(s)	601
BstF5I	GGATG	2 cut(s)	663, 754
BstFNI	CGCG	1 cut(s)	200
BstH2I	RGCGCY	1 cut(s)	457
BstHHI	GCGC	1 cut(s)	456
BstKTI	GATC	3 cut(s)	274, 572, 727
BstMBI	GATC	3 cut(s)	271, 569, 724
BstMWI	GCNNNNNNNGC	3 cut(s)	460, 677, 743
BstNSI	RCATGY	1 cut(s)	610
BstSCI	CCNGG	1 cut(s)	815
BstSFI	CTRYAG	1 cut(s)	735
BstUI	CGCG	1 cut(s)	200
BstV1I	GCAGC	3 cut(s)	114, 664, 852
BstX2I	RGATCY	1 cut(s)	569
BstYI	RGATCY	1 cut(s)	569
BsuRI	GGCC	2 cut(s)	671, 815
BtrI	CACGTC	1 cut(s)	67
BtsCI	GGATG	2 cut(s)	663, 754
BtsI	GCAGTG	2 cut(s)	621, 765
BtsIMutI	CAGTG	7 cut(s)	301, 358, 433, 475, 522, 621, 765
BtuMI	TCGCGA	1 cut(s)	200
BveI	ACCTGC	1 cut(s)	257
Cac8I	GCNNGC	2 cut(s)	290, 845
CciI	TCATGA	1 cut(s)	929
CfoI	GCGC	1 cut(s)	456
Cfr13I	GGNCC	3 cut(s)	791, 813, 819
Csp6I	GTAC	4 cut(s)	494, 661, 870, 914
CviAII	CATG	9 cut(s)	150, 241, 263, 400, 458, 607, 641, 848, 930
CviQI	GTAC	4 cut(s)	494, 661, 870, 914
DdeI	CTNAG	1 cut(s)	601
DpnI	GATC	3 cut(s)	273, 571, 726
DpnII	GATC	3 cut(s)	271, 569, 724
Eam1104I	CTCTTC	1 cut(s)	714
EarI	CTCTTC	1 cut(s)	714
Ecl136II	GAGCTC	1 cut(s)	463
Eco24I	GRGCYC	1 cut(s)	465
Eco47I	GGWCC	2 cut(s)	791, 819
Eco53kI	GAGCTC	1 cut(s)	463
Eco57I	CTGAAG	1 cut(s)	578
EcoICRI	GAGCTC	1 cut(s)	463
EcoO109I	RGGNCCY	1 cut(s)	819
EcoT38I	GRGCYC	1 cut(s)	465
FaeI	CATG	9 cut(s)	153, 244, 266, 403, 461, 610, 644, 851, 933
FaqI	GGGAC	2 cut(s)	530, 832
FatI	CATG	9 cut(s)	149, 240, 262, 399, 457, 606, 640, 847, 929
Fnu4HI	GCNGC	3 cut(s)	128, 678, 841
FokI	GGATG	2 cut(s)	670, 761
FriOI	GRGCYC	1 cut(s)	465
Fsp4HI	GCNGC	3 cut(s)	128, 678, 841
FspBI	CTAG	4 cut(s)	83, 236, 311, 365
GlaI	GCGC	1 cut(s)	455
GluI	GCNGC	3 cut(s)	128, 678, 841
GsaI	CCCAGC	2 cut(s)	234, 407
GsuI	CTGGAG	1 cut(s)	470
HaeII	RGCGCY	1 cut(s)	457
HaeIII	GGCC	2 cut(s)	671, 815
HapII	CCGG	1 cut(s)	816
HhaI	GCGC	1 cut(s)	456
Hin1II	CATG	9 cut(s)	153, 244, 266, 403, 461, 610, 644, 851, 933
Hin6I	GCGC	1 cut(s)	454
HinP1I	GCGC	1 cut(s)	454
HinfI	GANTC	1 cut(s)	195
HpaII	CCGG	1 cut(s)	816
HphI	GGTGA	3 cut(s)	100, 281, 725
Hpy166II	GTNNAC	1 cut(s)	64
Hpy188I	TCNGA	2 cut(s)	256, 604
Hpy188III	TCNNGA	2 cut(s)	199, 930
Hpy8I	GTNNAC	1 cut(s)	64
HpyAV	CCTTC	5 cut(s)	6, 85, 430, 553, 640
HpyCH4III	ACNGT	1 cut(s)	856
HpyCH4IV	ACGT	1 cut(s)	66
HpyCH4V	TGCA	4 cut(s)	266, 635, 737, 758
HpyF10VI	GCNNNNNNNGC	3 cut(s)	460, 677, 743
HpyF3I	CTNAG	1 cut(s)	601
HpySE526I	ACGT	1 cut(s)	66
Hsp92II	CATG	9 cut(s)	153, 244, 266, 403, 461, 610, 644, 851, 933
HspAI	GCGC	1 cut(s)	454
Kzo9I	GATC	3 cut(s)	271, 569, 724
LmnI	GCTCC	2 cut(s)	285, 451
Lsp1109I	GCAGC	3 cut(s)	114, 664, 852
LweI	GCATC	2 cut(s)	295, 745
MaeI	CTAG	4 cut(s)	83, 236, 311, 365
MaeII	ACGT	1 cut(s)	66
MaeIII	GTNAC	1 cut(s)	856
MalI	GATC	3 cut(s)	273, 571, 726
MboI	GATC	3 cut(s)	271, 569, 724
MboII	GAAGA	4 cut(s)	214, 728, 731, 764
MflI	RGATCY	1 cut(s)	569
MhlI	GDGCHC	1 cut(s)	465
MluCI	AATT	3 cut(s)	76, 315, 621
MmeI	TCCRAC	1 cut(s)	487
MseI	TTAA	4 cut(s)	24, 179, 581, 620
MslI	CAYNNNNRTG	1 cut(s)	267
MspCI	CTTAAG	1 cut(s)	23
MspI	CCGG	1 cut(s)	816
MspR9I	CCNGG	1 cut(s)	817
Mva1269I	GAATGC	1 cut(s)	379
MvnI	CGCG	1 cut(s)	200
MwoI	GCNNNNNNNGC	3 cut(s)	460, 677, 743
NciI	CCSGG	1 cut(s)	817
NdeII	GATC	3 cut(s)	271, 569, 724
NlaIII	CATG	9 cut(s)	153, 244, 266, 403, 461, 610, 644, 851, 933
NlaIV	GGNNCC	4 cut(s)	418, 571, 814, 820
NruI	TCGCGA	1 cut(s)	200
NspI	RCATGY	1 cut(s)	610
PagI	TCATGA	1 cut(s)	929
PaqCI	CACCTGC	1 cut(s)	257
PciI	ACATGT	1 cut(s)	606
PctI	GAATGC	1 cut(s)	379
PfeI	GAWTC	1 cut(s)	195
PflMI	CCANNNNNTGG	1 cut(s)	477
PkrI	GCNGC	3 cut(s)	129, 679, 842
PpuMI	RGGWCCY	1 cut(s)	819
PscI	ACATGT	1 cut(s)	606
Psp124BI	GAGCTC	1 cut(s)	465
Psp5II	RGGWCCY	1 cut(s)	819
PspFI	CCCAGC	2 cut(s)	230, 403
PspN4I	GGNNCC	4 cut(s)	418, 571, 814, 820
PspPI	GGNCC	3 cut(s)	791, 813, 819
PspPPI	RGGWCCY	1 cut(s)	819
PstI	CTGCAG	1 cut(s)	739
PsuI	RGATCY	1 cut(s)	569
RruI	TCGCGA	1 cut(s)	200
RsaI	GTAC	4 cut(s)	495, 662, 871, 915
RsaNI	GTAC	4 cut(s)	494, 661, 870, 914
RseI	CAYNNNNRTG	1 cut(s)	267
SacI	GAGCTC	1 cut(s)	465
SaqAI	TTAA	4 cut(s)	24, 179, 581, 620
SatI	GCNGC	3 cut(s)	128, 678, 841
Sau3AI	GATC	3 cut(s)	271, 569, 724
Sau96I	GGNCC	3 cut(s)	791, 813, 819
ScaI	AGTACT	1 cut(s)	495
ScrFI	CCNGG	1 cut(s)	817
SduI	GDGCHC	1 cut(s)	465
SfaNI	GCATC	2 cut(s)	295, 745
SfcI	CTRYAG	1 cut(s)	735
SinI	GGWCC	2 cut(s)	791, 819
SmiMI	CAYNNNNRTG	1 cut(s)	267
SmlI	CTYRAG	1 cut(s)	23
SmoI	CTYRAG	1 cut(s)	23
Sse9I	AATT	3 cut(s)	76, 315, 621
SsiI	CCGC	1 cut(s)	746
SspMI	CTAG	4 cut(s)	83, 236, 311, 365
SstI	GAGCTC	1 cut(s)	465
StyD4I	CCNGG	1 cut(s)	815
TaaI	ACNGT	1 cut(s)	856
TaiI	ACGT	1 cut(s)	69
TaqI	TCGA	2 cut(s)	274, 802
TasI	AATT	3 cut(s)	76, 315, 621
TatI	WGTACW	4 cut(s)	493, 660, 869, 913
TfiI	GAWTC	1 cut(s)	195
Tru1I	TTAA	4 cut(s)	24, 179, 581, 620
Tru9I	TTAA	4 cut(s)	24, 179, 581, 620
TscAI	CASTG	7 cut(s)	301, 358, 433, 482, 522, 621, 765
TseI	GCWGC	3 cut(s)	127, 677, 840
TspDTI	ATGAA	3 cut(s)	251, 765, 864
TspRI	CASTG	7 cut(s)	301, 358, 433, 482, 522, 621, 765
Van91I	CCANNNNNTGG	1 cut(s)	477
Vha464I	CTTAAG	1 cut(s)	23
VpaK11BI	GGWCC	2 cut(s)	791, 819
XapI	RAATTY	1 cut(s)	76
XceI	RCATGY	1 cut(s)	610
XspI	CTAG	4 cut(s)	83, 236, 311, 365
ZrmI	AGTACT	1 cut(s)	495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.