RchiOBHm_Chr4g0408431

Solute carrier family 35 member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0002599
Physical Location & Seq
Forward (+)
31122592 .. 31128763
6172 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37956

Sequence Viewer

Length: 1119 bp
ATGAGGAATTTGAGAGAGTTGTGGGTGGAGAAGACATTGGTCGGTCTTGGGTTGGGCCAGTTTCTCTCGCTTTTGATCACTTCCACTGGCTTTTCATCCTCAGAGTTGGCTAAAAAAGGAATTAATGCCCCTACTTCGCAGTCTTTCCTGAACTATGTCCTCTTAGCAATTGTCTATGGAAGTATCATGGTTTACCGGAGGAAACCACTTAAGGCTAAATGGTATTACTATGTTCTTCTTGGGTTGGTAGATGTGGAGGCCAATTTTCTAGTGGTGAAGGCTTATCAATACACATCTATAACGAGTGTAATGTTGCTGGATTGTTGGACTATCCCATCGGTCATGCTTCTTACTTGGGTTTTCCTCAAAACAAAATACAGATTTAAAAAGATAACTGGTGTGGTGGCCTGTGTTGCTGGCCTTGTCATGGTTGTTTTCTCAGATGTTCATGCAGGCGATCGAGCAGGAGGGAGCAATCCCCGTAAAGGTGATATACTAGTAATTGCCGGTTCTACCCTGTATGCTGTCACTAATGTCAGTGAGGAGTTTCTAGTGAAGAATGCTGACAGAGTTGAACTCATGTCCTTGCTGGGCTTTTTTGGTGCCATTGTCAGTGCTATCCAAATAAGCATTTTAGAACGTAACGAACTCAAATCCATCAAGTGGTCATCTGGAGCAGTATTTCCTTTTGTTGGATTTTCATTGGCTATGTTCCTCTTTTACTCATTAGTCCCAATCTTACTTAAGATTAATGGGTCTACGATGTTAAACCTGTCATTGCTGACCTCAGACATGTGGGCCGTCTTAATTCGCATTTTTGCTTACCATGAGAAGGTTGATTGGATGTACTTTGTGGCCTTTGCAATCGTTGTTGTTGGGCTTGTTATTTATTCATGGGGTGACAAGGAAGAGGATCAACGCTGGGCTGATGTTGCGGATGAAGATGCAGAGAGAAGCAAACGTTTTGACGAGGAAGTTGGTTCAGTAAGTCGAGGAACAATGGCTGGGACCTCAAAAACAGGGGATAACAGCAAGGATGAAGCTCCTACTTGCTCTACAGAAAGAGTAATTGTTGACAACAAGAGCATAGGAAAAGGTGGACAGGGGAAGAAATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SLC35F

Protein Analysis

372

Amino Acids

41.22

Weight (kDa)

8.87

Isoelectric Point (pI)

22.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SLC35F PF06027 10 - 298 2.3e-133 Solute carrier family 35
EamA PF00892 22 - 145 4.3e-08 EamA-like transporter family
CRT-like PF08627 52 - 209 1.2e-07 CRT-like, chloroquine-resistance transporter-like
EamA PF00892 162 - 298 1.9e-06 EamA-like transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 602
AccB7I CCANNNNNTGG 1 cut(s) 663
AccI GTMKAC 1 cut(s) 758
AciI CCGC 1 cut(s) 935
AclI AACGTT 1 cut(s) 961
AclWI GGATC 1 cut(s) 921
AcsI RAATTY 1 cut(s) 7
AfaI GTAC 1 cut(s) 848
AfiI CCNNNNNNNGG 5 cut(s) 427, 485, 663, 692, 832
AflII CTTAAG 2 cut(s) 209, 743
AflIII ACRYGT 1 cut(s) 792
AgsI TTSAA 1 cut(s) 575
AhlI ACTAGT 1 cut(s) 496
AluBI AGCT 1 cut(s) 1043
AluI AGCT 1 cut(s) 1043
AlwI GGATC 1 cut(s) 921
AoxI GGCC 6 cut(s) 55, 258, 405, 418, 798, 855
ApoI RAATTY 1 cut(s) 7
AseI ATTAAT 2 cut(s) 123, 750
AspS9I GGNCC 3 cut(s) 55, 798, 1008
AsuHPI GGTGA 3 cut(s) 286, 500, 911
AvaII GGWCC 1 cut(s) 1008
BanI GGYRCC 1 cut(s) 602
BbsI GAAGAC 1 cut(s) 38
BccI CCATC 2 cut(s) 343, 665
BceAI ACGGC 1 cut(s) 785
BclI TGATCA 1 cut(s) 75
BcuI ACTAGT 1 cut(s) 496
BfaI CTAG 3 cut(s) 269, 497, 551
BfmI CTRYAG 1 cut(s) 1056
BfrI CTTAAG 2 cut(s) 209, 743
Bme18I GGWCC 1 cut(s) 1008
BmgT120I GGNCC 3 cut(s) 55, 798, 1008
BmiI GGNNCC 2 cut(s) 604, 1009
BmsI GCATC 1 cut(s) 934
BoxI GACNNNNGTC 1 cut(s) 38
BpiI GAAGAC 1 cut(s) 38
BplI GAGNNNNNCTC 2 cut(s) 561, 593
BpmI CTGGAG 1 cut(s) 693
BsaWI WCCGGW 1 cut(s) 195
Bsc4I CCNNNNNNNGG 5 cut(s) 427, 485, 663, 692, 832
Bse118I RCCGGY 1 cut(s) 506
Bse1I ACTGG 3 cut(s) 58, 91, 400
Bse3DI GCAATG 1 cut(s) 776
BseGI GGATG 4 cut(s) 95, 849, 943, 1042
BseLI CCNNNNNNNGG 5 cut(s) 427, 485, 663, 692, 832
BseMI GCAATG 1 cut(s) 776
BseMII CTCAG 3 cut(s) 114, 453, 801
BseNI ACTGG 3 cut(s) 58, 91, 400
BseRI GAGGAG 1 cut(s) 557
BseYI CCCAGC 3 cut(s) 589, 921, 1004
Bsh1285I CGRYCG 1 cut(s) 460
BshFI GGCC 6 cut(s) 57, 260, 407, 420, 800, 857
BshNI GGYRCC 1 cut(s) 602
BsiEI CGRYCG 1 cut(s) 460
BsiSI CCGG 2 cut(s) 196, 507
BslFI GGGAC 2 cut(s) 716, 1021
BslI CCNNNNNNNGG 5 cut(s) 427, 485, 663, 692, 832
BsmFI GGGAC 2 cut(s) 716, 1021
BsmI GAATGC 1 cut(s) 565
BsnI GGCC 6 cut(s) 57, 260, 407, 420, 800, 857
Bsp143I GATC 3 cut(s) 75, 457, 913
BspACI CCGC 1 cut(s) 935
BspANI GGCC 6 cut(s) 57, 260, 407, 420, 800, 857
BspCNI CTCAG 3 cut(s) 113, 452, 800
BspHI TCATGA 1 cut(s) 1115
BspLI GGNNCC 2 cut(s) 604, 1009
BspPI GGATC 1 cut(s) 921
BspT107I GGYRCC 1 cut(s) 602
BspTI CTTAAG 2 cut(s) 209, 743
BsrDI GCAATG 1 cut(s) 776
BsrFI RCCGGY 1 cut(s) 506
BsrI ACTGG 3 cut(s) 58, 91, 400
BssAI RCCGGY 1 cut(s) 506
BssMI GATC 3 cut(s) 75, 457, 913
Bst6I CTCTTC 1 cut(s) 903
BstAFI CTTAAG 2 cut(s) 209, 743
BstC8I GCNNGC 2 cut(s) 418, 454
BstDEI CTNAG 4 cut(s) 100, 163, 439, 787
BstF5I GGATG 4 cut(s) 95, 849, 943, 1042
BstKTI GATC 3 cut(s) 78, 460, 916
BstMBI GATC 3 cut(s) 75, 457, 913
BstMCI CGRYCG 1 cut(s) 460
BstMWI GCNNNNNNNGC 2 cut(s) 413, 932
BstNSI RCATGY 1 cut(s) 796
BstPAI GACNNNNGTC 1 cut(s) 38
BstSFI CTRYAG 1 cut(s) 1056
BstV2I GAAGAC 1 cut(s) 38
BsuRI GGCC 6 cut(s) 57, 260, 407, 420, 800, 857
BtsCI GGATG 4 cut(s) 95, 849, 943, 1042
BtsIMutI CAGTG 3 cut(s) 84, 544, 619
Cac8I GCNNGC 2 cut(s) 418, 454
CciI TCATGA 1 cut(s) 1115
Cfr10I RCCGGY 1 cut(s) 506
Cfr13I GGNCC 3 cut(s) 55, 798, 1008
Csp6I GTAC 1 cut(s) 847
CviAII CATG 9 cut(s) 187, 343, 427, 449, 580, 793, 827, 894, 1116
CviQI GTAC 1 cut(s) 847
DdeI CTNAG 4 cut(s) 100, 163, 439, 787
DpnI GATC 3 cut(s) 77, 459, 915
DpnII GATC 3 cut(s) 75, 457, 913
DraI TTTAAA 1 cut(s) 385
Eam1104I CTCTTC 1 cut(s) 903
EarI CTCTTC 1 cut(s) 903
Eco47I GGWCC 1 cut(s) 1008
EcoO109I RGGNCCY 1 cut(s) 1008
FaeI CATG 9 cut(s) 190, 346, 430, 452, 583, 796, 830, 897, 1119
FaqI GGGAC 2 cut(s) 716, 1021
FatI CATG 9 cut(s) 186, 342, 426, 448, 579, 792, 826, 893, 1115
FbaI TGATCA 1 cut(s) 75
FblI GTMKAC 1 cut(s) 758
FokI GGATG 4 cut(s) 82, 856, 950, 1049
FspBI CTAG 3 cut(s) 269, 497, 551
GsaI CCCAGC 3 cut(s) 593, 925, 1008
GsuI CTGGAG 1 cut(s) 693
HaeIII GGCC 6 cut(s) 57, 260, 407, 420, 800, 857
HapII CCGG 2 cut(s) 196, 507
Hin1II CATG 9 cut(s) 190, 346, 430, 452, 583, 796, 830, 897, 1119
HincII GTYRAC 1 cut(s) 1075
HindII GTYRAC 1 cut(s) 1075
HpaII CCGG 2 cut(s) 196, 507
HphI GGTGA 3 cut(s) 286, 500, 911
Hpy166II GTNNAC 4 cut(s) 193, 759, 1075, 1100
Hpy188I TCNGA 3 cut(s) 103, 442, 790
Hpy188III TCNNGA 3 cut(s) 148, 672, 1116
Hpy8I GTNNAC 4 cut(s) 193, 759, 1075, 1100
HpyAV CCTTC 2 cut(s) 271, 826
HpyCH4IV ACGT 2 cut(s) 640, 961
HpyCH4V TGCA 3 cut(s) 452, 863, 947
HpyF10VI GCNNNNNNNGC 2 cut(s) 413, 932
HpyF3I CTNAG 4 cut(s) 100, 163, 439, 787
HpySE526I ACGT 2 cut(s) 640, 961
Hsp92II CATG 9 cut(s) 190, 346, 430, 452, 583, 796, 830, 897, 1119
Ksp22I TGATCA 1 cut(s) 75
Kzo9I GATC 3 cut(s) 75, 457, 913
LmnI GCTCC 3 cut(s) 471, 674, 1048
LweI GCATC 1 cut(s) 934
MaeI CTAG 3 cut(s) 269, 497, 551
MaeII ACGT 2 cut(s) 640, 961
MaeIII GTNAC 3 cut(s) 526, 641, 899
MalI GATC 3 cut(s) 77, 459, 915
MboI GATC 3 cut(s) 75, 457, 913
MboII GAAGA 5 cut(s) 43, 227, 568, 920, 953
MfeI CAATTG 1 cut(s) 168
MluCI AATT 7 cut(s) 7, 120, 168, 262, 501, 807, 1068
MmeI TCCRAC 2 cut(s) 305, 673
MseI TTAA 7 cut(s) 123, 210, 384, 744, 750, 767, 806
MspCI CTTAAG 2 cut(s) 209, 743
MspI CCGG 2 cut(s) 196, 507
MunI CAATTG 1 cut(s) 168
Mva1269I GAATGC 1 cut(s) 565
MwoI GCNNNNNNNGC 2 cut(s) 413, 932
NdeII GATC 3 cut(s) 75, 457, 913
NlaIII CATG 9 cut(s) 190, 346, 430, 452, 583, 796, 830, 897, 1119
NlaIV GGNNCC 2 cut(s) 604, 1009
NmuCI GTSAC 2 cut(s) 526, 899
NspI RCATGY 1 cut(s) 796
PagI TCATGA 1 cut(s) 1115
PciI ACATGT 1 cut(s) 792
PctI GAATGC 1 cut(s) 565
PflMI CCANNNNNTGG 1 cut(s) 663
Ple19I CGATCG 1 cut(s) 460
PpuMI RGGWCCY 1 cut(s) 1008
PscI ACATGT 1 cut(s) 792
PshAI GACNNNNGTC 1 cut(s) 38
PshBI ATTAAT 2 cut(s) 123, 750
Psp1406I AACGTT 1 cut(s) 961
Psp5II RGGWCCY 1 cut(s) 1008
PspFI CCCAGC 3 cut(s) 589, 921, 1004
PspN4I GGNNCC 2 cut(s) 604, 1009
PspPI GGNCC 3 cut(s) 55, 798, 1008
PspPPI RGGWCCY 1 cut(s) 1008
PvuI CGATCG 1 cut(s) 460
RsaI GTAC 1 cut(s) 848
RsaNI GTAC 1 cut(s) 847
SaqAI TTAA 7 cut(s) 123, 210, 384, 744, 750, 767, 806
Sau3AI GATC 3 cut(s) 75, 457, 913
Sau96I GGNCC 3 cut(s) 55, 798, 1008
SetI ASST 9 cut(s) 490, 643, 774, 788, 837, 964, 1013, 1045, 1099
SfaNI GCATC 1 cut(s) 934
SfcI CTRYAG 1 cut(s) 1056
SinI GGWCC 1 cut(s) 1008
SmlI CTYRAG 2 cut(s) 209, 743
SmoI CTYRAG 2 cut(s) 209, 743
SpeI ACTAGT 1 cut(s) 496
Sse9I AATT 7 cut(s) 7, 120, 168, 262, 501, 807, 1068
SsiI CCGC 1 cut(s) 935
SspMI CTAG 3 cut(s) 269, 497, 551
TaiI ACGT 2 cut(s) 643, 964
TaqI TCGA 2 cut(s) 460, 991
TaqII GACCGA 2 cut(s) 32, 328
TasI AATT 7 cut(s) 7, 120, 168, 262, 501, 807, 1068
TatI WGTACW 1 cut(s) 846
Tru1I TTAA 7 cut(s) 123, 210, 384, 744, 750, 767, 806
Tru9I TTAA 7 cut(s) 123, 210, 384, 744, 750, 767, 806
TscAI CASTG 3 cut(s) 91, 544, 619
TseFI GTSAC 2 cut(s) 526, 899
Tsp45I GTSAC 2 cut(s) 526, 899
TspDTI ATGAA 6 cut(s) 84, 437, 690, 882, 954, 1053
TspRI CASTG 3 cut(s) 91, 544, 619
Van91I CCANNNNNTGG 1 cut(s) 663
Vha464I CTTAAG 2 cut(s) 209, 743
VpaK11BI GGWCC 1 cut(s) 1008
VspI ATTAAT 2 cut(s) 123, 750
XapI RAATTY 1 cut(s) 7
XceI RCATGY 1 cut(s) 796
XcmI CCANNNNNNNNNTGG 1 cut(s) 268
XmiI GTMKAC 1 cut(s) 758
XspI CTAG 3 cut(s) 269, 497, 551
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.