AT3G59340

solute carrier family 35 member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0002599
Physical Location & Seq
Reverse (-)
21928692 .. 21931570
2879 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G59340.3

Sequence Viewer

Length: 1002 bp
ATGGCAATGGGTTTCGATTTCAATGAGATGAACAAAACAAAGAAGACTTTAATTGGACTTGGCTTGGGACAGATCCTCTCACTTCTATGTACTTCTAATGCCTTCACATCCTCTGAGCTCGCCAGAAAAGGAATAAATGCTCCAACGTCACAAACGTTCCTCAGTTATACATTACTGGCAGTCGTCTATGGAGGTATCATGCTCTATCGGAGACCAACAATTAAGGGGAAGTGGTATCACTATTTCCTCCTTGCTTTAGTTGACGTGGAAGGCAATTTTCTTGTGGTGAAGGCGAATCAGTACACATCGATTACGAGTATCATGCTACTTGATTGCTGGGCGATCCCTTGTGTGTTGGTCTTAACTTGGATGTTCCTGAAAACAAAATACAGATTAATGAAGATCAGTGGTGTATTTATCTGTATTGCTGGTGTTGTCATGGTACTCTTCTCTGACGTTCACGCAGGAAGTCGAGCAGGTGGAAGTAATCCTGTTAAAGGAGATTTTCTTGTTCTAGCTGGAGCAACTTTATATGCTGTCAGTAATACCACCGAGGAGTTTCTTGTGAAGAATGCAGACACAGTTGAGTTGATGACCTTCATGGGACTTTTTGGAGCCATTATTAGTGCCATTCAGGTAGCCATATTCGAACAAGGTGAGCTCAAAGCTATTCACTGGTCAGCTGATGCAGTTTTCCCTTTCCTTAGATTCGCAATCACGATGTTCCTCTTCTATTCACTACTACCGATTTTACTGAGGACTAATGGTTCAACAATGTTCACCCTCTCATTGCTGACATCAGACATGTGGGCGGTTTTGATCCGCATTTTCGCATACCACGAGAAGGTTGATTGGCTCTACTACTTGGCATTTGCTACAACAGCTATTGGACTAATCATATACTCAATGAAGGAGAAAGATGAGGAAGAAGAAAGAGAGGAGCAGAGGAAGAAACTGTTGGATGAGGAGGAAGGTCAATCACTTCCAGACACATCGTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SLC35F

Protein Analysis

333

Amino Acids

37.32

Weight (kDa)

5.88

Isoelectric Point (pI)

26.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SLC35F PF06027 39 - 330 1.3e-147 Solute carrier family 35
EamA PF00892 52 - 176 6.7e-07 EamA-like transporter family
CRT-like PF08627 106 - 245 1.4e-10 CRT-like, chloroquine-resistance transporter-like
EamA PF00892 193 - 329 6.8e-07 EamA-like transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 467
Acc36I ACCTGC 1 cut(s) 467
AciI CCGC 2 cut(s) 812, 823
AclI AACGTT 1 cut(s) 155
AclWI GGATC 3 cut(s) 67, 337, 814
AfaI GTAC 3 cut(s) 91, 302, 444
AfiI CCNNNNNNNGG 2 cut(s) 497, 844
AflIII ACRYGT 1 cut(s) 804
AgsI TTSAA 2 cut(s) 22, 771
AjiI CACGTC 1 cut(s) 265
AjuI GAANNNNNNNTTGG 2 cut(s) 941, 973
AloI GAACNNNNNNTCC 2 cut(s) 751, 783
AluBI AGCT 6 cut(s) 118, 518, 661, 668, 683, 884
AluI AGCT 6 cut(s) 118, 518, 661, 668, 683, 884
Alw21I GWGCWC 2 cut(s) 120, 663
Alw26I GTCTC 1 cut(s) 205
AlwI GGATC 3 cut(s) 67, 337, 814
AseI ATTAAT 1 cut(s) 395
AsuHPI GGTGA 3 cut(s) 298, 668, 772
AsuII TTCGAA 1 cut(s) 648
BanII GRGCYC 2 cut(s) 120, 663
BauI CACGAG 1 cut(s) 839
BbsI GAAGAC 1 cut(s) 50
Bbv12I GWGCWC 2 cut(s) 120, 663
BcgI CGANNNNNNTGC 2 cut(s) 304, 338
BcoDI GTCTC 1 cut(s) 205
BfaI CTAG 1 cut(s) 515
BfuAI ACCTGC 1 cut(s) 467
BmgBI CACGTC 1 cut(s) 265
BmiI GGNNCC 1 cut(s) 616
BmsI GCATC 1 cut(s) 676
BpiI GAAGAC 1 cut(s) 50
BpmI CTGGAG 1 cut(s) 540
Bpu14I TTCGAA 1 cut(s) 648
Bsa29I ATCGAT 1 cut(s) 308
BsaI GGTCTC 1 cut(s) 205
BsaJI CCNNGG 1 cut(s) 552
Bsc4I CCNNNNNNNGG 2 cut(s) 497, 844
Bse1I ACTGG 2 cut(s) 180, 680
Bse3DI GCAATG 2 cut(s) 12, 788
BseCI ATCGAT 1 cut(s) 308
BseDI CCNNGG 1 cut(s) 552
BseGI GGATG 3 cut(s) 107, 375, 967
BseLI CCNNNNNNNGG 2 cut(s) 497, 844
BseMI GCAATG 2 cut(s) 12, 788
BseMII CTCAG 3 cut(s) 105, 175, 746
BseNI ACTGG 2 cut(s) 180, 680
BseRI GAGGAG 3 cut(s) 569, 953, 980
BseYI CCCAGC 1 cut(s) 336
BshVI ATCGAT 1 cut(s) 308
BsiHKAI GWGCWC 2 cut(s) 120, 663
BslFI GGGAC 2 cut(s) 81, 618
BslI CCNNNNNNNGG 2 cut(s) 497, 844
BsmAI GTCTC 1 cut(s) 205
BsmFI GGGAC 2 cut(s) 81, 618
BsmI GAATGC 1 cut(s) 577
Bso31I GGTCTC 1 cut(s) 205
Bsp119I TTCGAA 1 cut(s) 648
Bsp1286I GDGCHC 2 cut(s) 120, 663
Bsp143I GATC 4 cut(s) 72, 342, 402, 819
BspACI CCGC 2 cut(s) 812, 823
BspCNI CTCAG 3 cut(s) 106, 174, 747
BspDI ATCGAT 1 cut(s) 308
BspLI GGNNCC 1 cut(s) 616
BspMI ACCTGC 1 cut(s) 467
BspPI GGATC 3 cut(s) 67, 337, 814
BspT104I TTCGAA 1 cut(s) 648
BspTNI GGTCTC 1 cut(s) 205
BsrDI GCAATG 2 cut(s) 12, 788
BsrI ACTGG 2 cut(s) 180, 680
BssECI CCNNGG 1 cut(s) 552
BssMI GATC 4 cut(s) 72, 342, 402, 819
BssSI CACGAG 1 cut(s) 839
Bst2BI CACGAG 1 cut(s) 839
Bst4CI ACNGT 2 cut(s) 583, 957
Bst6I CTCTTC 2 cut(s) 452, 734
BstBI TTCGAA 1 cut(s) 648
BstC8I GCNNGC 1 cut(s) 120
BstDEI CTNAG 4 cut(s) 114, 161, 704, 755
BstENI CCTNNNNNAGG 1 cut(s) 495
BstF5I GGATG 3 cut(s) 107, 375, 967
BstKTI GATC 4 cut(s) 75, 345, 405, 822
BstMAI GTCTC 1 cut(s) 205
BstMBI GATC 4 cut(s) 72, 342, 402, 819
BstMWI GCNNNNNNNGC 1 cut(s) 881
BstNSI RCATGY 1 cut(s) 808
BstV2I GAAGAC 1 cut(s) 50
BstX2I RGATCY 1 cut(s) 72
BstYI RGATCY 1 cut(s) 72
Bsu15I ATCGAT 1 cut(s) 308
BsuTUI ATCGAT 1 cut(s) 308
BtrI CACGTC 1 cut(s) 265
BtsCI GGATG 3 cut(s) 107, 375, 967
BtsIMutI CAGTG 2 cut(s) 412, 673
BveI ACCTGC 1 cut(s) 467
Cac8I GCNNGC 1 cut(s) 120
ClaI ATCGAT 1 cut(s) 308
Csp6I GTAC 3 cut(s) 90, 301, 443
CviAII CATG 5 cut(s) 199, 322, 439, 601, 805
CviQI GTAC 3 cut(s) 90, 301, 443
DdeI CTNAG 4 cut(s) 114, 161, 704, 755
DpnI GATC 4 cut(s) 74, 344, 404, 821
DpnII GATC 4 cut(s) 72, 342, 402, 819
Eam1104I CTCTTC 2 cut(s) 452, 734
EarI CTCTTC 2 cut(s) 452, 734
Ecl136II GAGCTC 2 cut(s) 118, 661
Eco24I GRGCYC 2 cut(s) 120, 663
Eco31I GGTCTC 1 cut(s) 205
Eco53kI GAGCTC 2 cut(s) 118, 661
EcoICRI GAGCTC 2 cut(s) 118, 661
EcoNI CCTNNNNNAGG 1 cut(s) 495
EcoT38I GRGCYC 2 cut(s) 120, 663
FaeI CATG 5 cut(s) 202, 325, 442, 604, 808
FaqI GGGAC 2 cut(s) 81, 618
FatI CATG 5 cut(s) 198, 321, 438, 600, 804
FokI GGATG 3 cut(s) 94, 382, 974
FriOI GRGCYC 2 cut(s) 120, 663
FspBI CTAG 1 cut(s) 515
GsaI CCCAGC 1 cut(s) 340
GsuI CTGGAG 1 cut(s) 540
Hin1II CATG 5 cut(s) 202, 325, 442, 604, 808
HincII GTYRAC 1 cut(s) 262
HindII GTYRAC 1 cut(s) 262
HinfI GANTC 2 cut(s) 295, 708
HphI GGTGA 3 cut(s) 298, 668, 772
Hpy166II GTNNAC 4 cut(s) 262, 303, 460, 780
Hpy188I TCNGA 4 cut(s) 115, 210, 454, 802
Hpy188III TCNNGA 3 cut(s) 376, 718, 986
Hpy8I GTNNAC 4 cut(s) 262, 303, 460, 780
HpyAV CCTTC 7 cut(s) 112, 263, 283, 607, 838, 904, 965
HpyCH4III ACNGT 2 cut(s) 583, 957
HpyCH4IV ACGT 4 cut(s) 146, 155, 264, 456
HpyCH4V TGCA 2 cut(s) 575, 689
HpyF10VI GCNNNNNNNGC 1 cut(s) 881
HpyF3I CTNAG 4 cut(s) 114, 161, 704, 755
HpySE526I ACGT 4 cut(s) 146, 155, 264, 456
Hsp92II CATG 5 cut(s) 202, 325, 442, 604, 808
Kzo9I GATC 4 cut(s) 72, 342, 402, 819
LmnI GCTCC 4 cut(s) 145, 521, 614, 940
LweI GCATC 1 cut(s) 676
MaeI CTAG 1 cut(s) 515
MaeII ACGT 4 cut(s) 146, 155, 264, 456
MaeIII GTNAC 1 cut(s) 147
MalI GATC 4 cut(s) 74, 344, 404, 821
MboI GATC 4 cut(s) 72, 342, 402, 819
MboII GAAGA 8 cut(s) 55, 412, 439, 580, 721, 938, 941, 961
MflI RGATCY 1 cut(s) 72
MhlI GDGCHC 2 cut(s) 120, 663
MluCI AATT 3 cut(s) 51, 219, 274
MmeI TCCRAC 2 cut(s) 167, 939
MseI TTAA 5 cut(s) 50, 222, 362, 395, 495
MslI CAYNNNNRTG 1 cut(s) 85
MspA1I CMGCKG 1 cut(s) 683
Mva1269I GAATGC 1 cut(s) 577
MwoI GCNNNNNNNGC 1 cut(s) 881
NdeII GATC 4 cut(s) 72, 342, 402, 819
NlaIII CATG 5 cut(s) 202, 325, 442, 604, 808
NlaIV GGNNCC 1 cut(s) 616
NmuCI GTSAC 1 cut(s) 147
NspI RCATGY 1 cut(s) 808
NspV TTCGAA 1 cut(s) 648
PaqCI CACCTGC 1 cut(s) 467
PciI ACATGT 1 cut(s) 804
PcsI WCGNNNNNNNCGW 2 cut(s) 152, 837
PctI GAATGC 1 cut(s) 577
PfeI GAWTC 2 cut(s) 295, 708
PscI ACATGT 1 cut(s) 804
PshBI ATTAAT 1 cut(s) 395
Psp124BI GAGCTC 2 cut(s) 120, 663
Psp1406I AACGTT 1 cut(s) 155
PspFI CCCAGC 1 cut(s) 336
PspN4I GGNNCC 1 cut(s) 616
PsuI RGATCY 1 cut(s) 72
PvuII CAGCTG 1 cut(s) 683
RsaI GTAC 3 cut(s) 91, 302, 444
RsaNI GTAC 3 cut(s) 90, 301, 443
RseI CAYNNNNRTG 1 cut(s) 85
SacI GAGCTC 2 cut(s) 120, 663
SaqAI TTAA 5 cut(s) 50, 222, 362, 395, 495
Sau3AI GATC 4 cut(s) 72, 342, 402, 819
SduI GDGCHC 2 cut(s) 120, 663
SfaNI GCATC 1 cut(s) 676
SfuI TTCGAA 1 cut(s) 648
SmiMI CAYNNNNRTG 1 cut(s) 85
Sse9I AATT 3 cut(s) 51, 219, 274
SsiI CCGC 2 cut(s) 812, 823
SspMI CTAG 1 cut(s) 515
SstI GAGCTC 2 cut(s) 120, 663
TaaI ACNGT 2 cut(s) 583, 957
TaiI ACGT 4 cut(s) 149, 158, 267, 459
TaqI TCGA 4 cut(s) 15, 308, 472, 648
TasI AATT 3 cut(s) 51, 219, 274
TatI WGTACW 2 cut(s) 89, 300
TfiI GAWTC 2 cut(s) 295, 708
Tru1I TTAA 5 cut(s) 50, 222, 362, 395, 495
Tru9I TTAA 5 cut(s) 50, 222, 362, 395, 495
TscAI CASTG 2 cut(s) 412, 680
TseFI GTSAC 1 cut(s) 147
Tsp45I GTSAC 1 cut(s) 147
TspDTI ATGAA 4 cut(s) 44, 413, 589, 923
TspRI CASTG 2 cut(s) 412, 680
VspI ATTAAT 1 cut(s) 395
XagI CCTNNNNNAGG 1 cut(s) 495
XceI RCATGY 1 cut(s) 808
XspI CTAG 1 cut(s) 515
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.