Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8481489.1

Orthogroup ID

OG0002599

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2200

Gene Structure 2200 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8481489.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 302 bp

ccctctgtgtggttgggcttggcatagtgctcctctctgatgcaggggtagctggtggaggtggttcacaacctcttcttggagatgtcctggtcatagcaggaacaattttctttgcactgagcaatgttggtgaggagttttgtgtgaagaaaagagatcgtattgaagtagtatgcatgattggtgtatttggatttctaatattggcctttgttggctatggattggcaggctttatgctgtacacacttggtccattcgttcttcaggtcaatttccttctgatcaagtctcagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SLC35F

Protein Analysis

99

Amino Acids

10.36

Weight (kDa)

5.0

Isoelectric Point (pI)

26.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002599)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59310 AT3G59310 AT3G59310 AT3G59320 AT3G59320 AT3G59340 AT3G59340 AT3G59340 AT3G59340
fragaria_vesca	FvH4_4g11520 FvH4_6g18390
malus_domestica	MD04G1036800.v1.1 MD14G1020100.v1.1
prunus_persica	Prupe.1G186000_v2.0.a1 Prupe.7G113500_v2.0.a1
pyrus_communis	pycom04g02990 pycom14g01970
rosa_chinensis	RchiOBHm_Chr3g0472881 RchiOBHm_Chr4g0408431
rosa_laevigata	RLG00000008651 RLG00000024049
rosa_multiflora	Rmu_co8481489.1_g000001 Rmu_sc0000787.1_g000011
rosa_roxburghii	Rroxscaffold_5G00352900 Rroxscaffold_6G00408510
rosa_rugosa	Rorug03G0128900 Rorug03G0129000 Rorug03G0129100 Rorug04G0085800 Rorug04G0085900
rosa_samantha	Rh3AG181100 Rh3BG207300 Rh3CG204500 Rh3DG168500 Rh4AG150500 Rh4BG147800 Rh4CG157800 Rh4DG143400
rosa_wichuraiana	Rw3G016200 Rw4G012290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	253
AfaI	GTAC	1 cut(s)	247
AfiI	CCNNNNNNNGG	2 cut(s)	9, 79
AgsI	TTSAA	1 cut(s)	169
AjnI	CCWGG	1 cut(s)	89
AluBI	AGCT	1 cut(s)	52
AluI	AGCT	1 cut(s)	52
Alw21I	GWGCWC	1 cut(s)	32
AoxI	GGCC	1 cut(s)	209
AspS9I	GGNCC	1 cut(s)	256
AsuHPI	GGTGA	1 cut(s)	145
AvaII	GGWCC	1 cut(s)	256
Bbv12I	GWGCWC	1 cut(s)	32
BciT130I	CCWGG	1 cut(s)	91
BclI	TGATCA	1 cut(s)	287
Bme1390I	CCNGG	1 cut(s)	91
Bme18I	GGWCC	1 cut(s)	256
BmgT120I	GGNCC	1 cut(s)	256
BmrFI	CCNGG	1 cut(s)	91
BmsI	GCATC	1 cut(s)	30
Bsc4I	CCNNNNNNNGG	2 cut(s)	9, 79
Bse3DI	GCAATG	1 cut(s)	132
BseBI	CCWGG	1 cut(s)	91
BseLI	CCNNNNNNNGG	2 cut(s)	9, 79
BseMI	GCAATG	1 cut(s)	132
BseMII	CTCAG	1 cut(s)	112
BseRI	GAGGAG	2 cut(s)	22, 151
BshFI	GGCC	1 cut(s)	211
BsiHKAI	GWGCWC	1 cut(s)	32
BslI	CCNNNNNNNGG	2 cut(s)	9, 79
BsnI	GGCC	1 cut(s)	211
Bsp1286I	GDGCHC	1 cut(s)	32
Bsp1407I	TGTACA	1 cut(s)	245
Bsp143I	GATC	2 cut(s)	159, 287
BspANI	GGCC	1 cut(s)	211
BspCNI	CTCAG	1 cut(s)	113
BsrDI	GCAATG	1 cut(s)	132
BsrGI	TGTACA	1 cut(s)	245
BssMI	GATC	2 cut(s)	159, 287
Bst2UI	CCWGG	1 cut(s)	91
Bst6I	CTCTTC	1 cut(s)	80
BstAUI	TGTACA	1 cut(s)	245
BstC8I	GCNNGC	1 cut(s)	234
BstDEI	CTNAG	2 cut(s)	121, 296
BstKTI	GATC	2 cut(s)	162, 290
BstMBI	GATC	2 cut(s)	159, 287
BstMWI	GCNNNNNNNGC	1 cut(s)	49
BstNI	CCWGG	1 cut(s)	91
BstSCI	CCNGG	1 cut(s)	89
BsuRI	GGCC	1 cut(s)	211
BtsIMutI	CAGTG	1 cut(s)	118
Cac8I	GCNNGC	1 cut(s)	234
Cfr13I	GGNCC	1 cut(s)	256
Csp6I	GTAC	1 cut(s)	246
CviAII	CATG	1 cut(s)	180
CviJI	RGCY	5 cut(s)	18, 52, 211, 221, 236
CviKI_1	RGCY	5 cut(s)	18, 52, 211, 221, 236
CviQI	GTAC	1 cut(s)	246
DdeI	CTNAG	2 cut(s)	121, 296
DpnI	GATC	2 cut(s)	161, 289
DpnII	GATC	2 cut(s)	159, 287
Eam1104I	CTCTTC	1 cut(s)	80
EarI	CTCTTC	1 cut(s)	80
Eco47I	GGWCC	1 cut(s)	256
Eco57I	CTGAAG	1 cut(s)	253
EcoRII	CCWGG	1 cut(s)	89
EcoT22I	ATGCAT	1 cut(s)	181
FaeI	CATG	1 cut(s)	183
FaiI	YATR	6 cut(s)	25, 97, 177, 181, 224, 241
FatI	CATG	1 cut(s)	179
FbaI	TGATCA	1 cut(s)	287
HaeIII	GGCC	1 cut(s)	211
Hin1II	CATG	1 cut(s)	183
HphI	GGTGA	1 cut(s)	145
Hpy166II	GTNNAC	2 cut(s)	67, 248
Hpy188I	TCNGA	2 cut(s)	39, 287
Hpy8I	GTNNAC	2 cut(s)	67, 248
HpyAV	CCTTC	1 cut(s)	292
HpyCH4V	TGCA	3 cut(s)	43, 118, 179
HpyF10VI	GCNNNNNNNGC	1 cut(s)	49
HpyF3I	CTNAG	2 cut(s)	121, 296
Hsp92II	CATG	1 cut(s)	183
Ksp22I	TGATCA	1 cut(s)	287
Kzo9I	GATC	2 cut(s)	159, 287
LmnI	GCTCC	1 cut(s)	35
LpnPI	CCDG	7 cut(s)	29, 38, 76, 86, 103, 218, 256
LweI	GCATC	1 cut(s)	30
MalI	GATC	2 cut(s)	161, 289
MboI	GATC	2 cut(s)	159, 287
MboII	GAAGA	3 cut(s)	67, 162, 259
MhlI	GDGCHC	1 cut(s)	32
MluCI	AATT	2 cut(s)	107, 276
MnlI	CCTC	5 cut(s)	13, 43, 52, 83, 129
Mph1103I	ATGCAT	1 cut(s)	181
MspR9I	CCNGG	1 cut(s)	91
MvaI	CCWGG	1 cut(s)	91
MwoI	GCNNNNNNNGC	1 cut(s)	49
NdeII	GATC	2 cut(s)	159, 287
NlaIII	CATG	1 cut(s)	183
NsiI	ATGCAT	1 cut(s)	181
Psp6I	CCWGG	1 cut(s)	89
PspGI	CCWGG	1 cut(s)	89
PspPI	GGNCC	1 cut(s)	256
RsaI	GTAC	1 cut(s)	247
RsaNI	GTAC	1 cut(s)	246
Sau3AI	GATC	2 cut(s)	159, 287
Sau96I	GGNCC	1 cut(s)	256
ScrFI	CCNGG	1 cut(s)	91
SduI	GDGCHC	1 cut(s)	32
SetI	ASST	4 cut(s)	54, 63, 75, 275
SfaNI	GCATC	1 cut(s)	30
SinI	GGWCC	1 cut(s)	256
Sse9I	AATT	2 cut(s)	107, 276
SspI	AATATT	1 cut(s)	206
StyD4I	CCNGG	1 cut(s)	89
TasI	AATT	2 cut(s)	107, 276
TatI	WGTACW	1 cut(s)	245
TscAI	CASTG	1 cut(s)	125
TspRI	CASTG	1 cut(s)	125
VpaK11BI	GGWCC	1 cut(s)	256
Zsp2I	ATGCAT	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.