Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002599

Physical Location & Seq

Genomic Coordinates Reverse (-)

12138839 .. 12143158

Gene Structure 4320 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g18390.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGAGCTTCTTGCCATCACCCACCTGGTGGAGCCGCCATGTCAACATGCGAACGCTGTACCTGCTGCTCCTGGGTCAGCTCGTCTCCTTCGTCCTCGCTCTCATGAGCTTCACTTCGTCTCTCATAGCCAATCTCGGTGTGGATGCTCCCATTACACAGACCATGTTCACTTACTTGCTTTTGGCTTTGGTTTATGGAGGAATCTTGCTGCATAGGCGTGAGAAATTACGGGTTTCTTGGTATTGGTATCTTCTCTTGGGGTTTGTGGATGTTCAAGGGAACTATCTTGTAAACGAAGCATATCAATTCTCATCAATCACTAGTGTGACATTATTGGACTGTTTCACAATCGCTTGGGTGCTCCTTCTCACATGGATCTTCCTTGGAGCTCGATATTCCCTATGGCAGTTGTTTGGTGCAGTCCTCTGTGTGGTTGGGCTTGGCGTAGTGCTCCTCTCTGATGCAGGGGTGGCTGGTGGAGGTGGTTCACAACCTCTTCTCGGAGATGTCCTTGTCATAGCAGGAACAATATTTTTTGCACTGAGCAATGTTGGTGAGGAGTTTTGTGTGAAGAAAAGAGATCGTATGGAAGTAGTATGCATGATTGGTGTTTTTGGATTTCTAGTGAGTGTGTGTCAGATATCTATTCTGGAATTAAAGAGTCTGGAGTCAGTGGAGTGGTCTACAGATATTATATTGGCCTTTGTTGGCTACGGATTGGCAGGCTTTATGCTCTACACACTTGGTCCGTTCGTTCTTCAGATGAGTGGAGCGACATTGTTCAATCTCTCTATTCTCACATCTGATATGTGGGCTGTGGTTGTTCGTATCTTTTTCTACCATCAGGAGGTAGATTGGTTATACTATTTATCATTTGCAATAGTAGTTATCGGACTCATCATCTATTCAGTAATGGAAAAGGAATCTGCTCCTATAACTTCACTTGAGGATGGAAACCCGAGCTACCAAATTCTCGAAGATGAAAGCGCTATATCTAGAAATGAGTCTTTGGTCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SLC35F

Protein Analysis

340

Amino Acids

37.73

Weight (kDa)

4.65

Isoelectric Point (pI)

29.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SLC35F	PF06027	15 - 304	4.7e-95	Solute carrier family 35
EamA	PF00892	23 - 151	3.2e-10	EamA-like transporter family
CRT-like	PF08627	71 - 235	2.8e-09	CRT-like, chloroquine-resistance transporter-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002599)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59310 AT3G59310 AT3G59310 AT3G59320 AT3G59320 AT3G59340 AT3G59340 AT3G59340 AT3G59340
fragaria_vesca	FvH4_4g11520 FvH4_6g18390
malus_domestica	MD04G1036800.v1.1 MD14G1020100.v1.1
prunus_persica	Prupe.1G186000_v2.0.a1 Prupe.7G113500_v2.0.a1
pyrus_communis	pycom04g02990 pycom14g01970
rosa_chinensis	RchiOBHm_Chr3g0472881 RchiOBHm_Chr4g0408431
rosa_laevigata	RLG00000008651 RLG00000024049
rosa_multiflora	Rmu_co8481489.1_g000001 Rmu_sc0000787.1_g000011
rosa_roxburghii	Rroxscaffold_5G00352900 Rroxscaffold_6G00408510
rosa_rugosa	Rorug03G0128900 Rorug03G0129000 Rorug03G0129100 Rorug04G0085800 Rorug04G0085900
rosa_samantha	Rh3AG181100 Rh3BG207300 Rh3CG204500 Rh3DG168500 Rh4AG150500 Rh4BG147800 Rh4CG157800 Rh4DG143400
rosa_wichuraiana	Rw3G016200 Rw4G012290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	69
AccB7I	CCANNNNNTGG	1 cut(s)	27
AccI	GTMKAC	1 cut(s)	683
AciI	CCGC	1 cut(s)	34
AclWI	GGATC	1 cut(s)	383
AcsI	RAATTY	1 cut(s)	969
AcuI	CTGAAG	1 cut(s)	743
AdeI	CACNNNGTG	1 cut(s)	27
AfaI	GTAC	1 cut(s)	59
AfeI	AGCGCT	1 cut(s)	988
AfiI	CCNNNNNNNGG	4 cut(s)	27, 430, 500, 847
AgsI	TTSAA	2 cut(s)	275, 784
AhlI	ACTAGT	1 cut(s)	320
AjnI	CCWGG	2 cut(s)	23, 69
AleI	CACNNNNGTG	1 cut(s)	323
AluBI	AGCT	5 cut(s)	6, 79, 108, 389, 963
AluI	AGCT	5 cut(s)	6, 79, 108, 389, 963
Alw21I	GWGCWC	3 cut(s)	363, 391, 453
Alw26I	GTCTC	2 cut(s)	88, 123
AlwI	GGATC	1 cut(s)	383
Ama87I	CYCGRG	1 cut(s)	958
Aor51HI	AGCGCT	1 cut(s)	988
AoxI	GGCC	1 cut(s)	699
ApeKI	GCWGC	2 cut(s)	64, 208
ApoI	RAATTY	1 cut(s)	969
AspLEI	GCGC	1 cut(s)	989
AspS9I	GGNCC	1 cut(s)	746
AsuHPI	GGTGA	2 cut(s)	9, 566
AvaI	CYCGRG	1 cut(s)	958
AvaII	GGWCC	1 cut(s)	746
BanII	GRGCYC	1 cut(s)	391
Bbv12I	GWGCWC	3 cut(s)	363, 391, 453
BbvI	GCAGC	2 cut(s)	51, 195
BccI	CCATC	3 cut(s)	22, 849, 944
BciT130I	CCWGG	2 cut(s)	25, 71
BcoDI	GTCTC	2 cut(s)	88, 123
BcuI	ACTAGT	1 cut(s)	320
BfaI	CTAG	3 cut(s)	321, 623, 996
BfmI	CTRYAG	1 cut(s)	684
BfoI	RGCGCY	1 cut(s)	990
BfuAI	ACCTGC	1 cut(s)	69
BisI	GCNGC	3 cut(s)	34, 65, 209
BlsI	GCNGC	3 cut(s)	35, 66, 210
Bme1390I	CCNGG	2 cut(s)	25, 71
Bme18I	GGWCC	1 cut(s)	746
BmeT110I	CYCGRG	1 cut(s)	958
BmgT120I	GGNCC	1 cut(s)	746
BmiI	GGNNCC	1 cut(s)	32
BmrFI	CCNGG	2 cut(s)	25, 71
BmsI	GCATC	2 cut(s)	133, 451
BpmI	CTGGAG	1 cut(s)	686
BpuEI	CTTGAG	1 cut(s)	965
BsaJI	CCNNGG	2 cut(s)	70, 382
Bsc4I	CCNNNNNNNGG	4 cut(s)	27, 430, 500, 847
Bse3DI	GCAATG	1 cut(s)	553
BseBI	CCWGG	2 cut(s)	25, 71
BseDI	CCNNGG	2 cut(s)	70, 382
BseGI	GGATG	3 cut(s)	148, 274, 955
BseLI	CCNNNNNNNGG	4 cut(s)	27, 430, 500, 847
BseMI	GCAATG	1 cut(s)	553
BseMII	CTCAG	1 cut(s)	533
BseRI	GAGGAG	2 cut(s)	443, 572
BseXI	GCAGC	2 cut(s)	51, 195
BsgI	GTGCAG	1 cut(s)	438
BshFI	GGCC	1 cut(s)	701
BsiHKAI	GWGCWC	3 cut(s)	363, 391, 453
BsiHKCI	CYCGRG	1 cut(s)	958
BslI	CCNNNNNNNGG	4 cut(s)	27, 430, 500, 847
BsmAI	GTCTC	2 cut(s)	88, 123
BsmBI	CGTCTC	2 cut(s)	88, 123
BsnI	GGCC	1 cut(s)	701
BsoBI	CYCGRG	1 cut(s)	958
Bsp1286I	GDGCHC	3 cut(s)	363, 391, 453
Bsp143I	GATC	2 cut(s)	375, 580
BspACI	CCGC	1 cut(s)	34
BspANI	GGCC	1 cut(s)	701
BspCNI	CTCAG	1 cut(s)	534
BspHI	TCATGA	2 cut(s)	102, 1016
BspLI	GGNNCC	1 cut(s)	32
BspMI	ACCTGC	1 cut(s)	69
BspPI	GGATC	1 cut(s)	383
BsrDI	GCAATG	1 cut(s)	553
BssECI	CCNNGG	2 cut(s)	70, 382
BssMI	GATC	2 cut(s)	375, 580
BssT1I	CCWWGG	1 cut(s)	382
Bst2UI	CCWGG	2 cut(s)	25, 71
Bst4CI	ACNGT	1 cut(s)	341
Bst6I	CTCTTC	1 cut(s)	501
BstC8I	GCNNGC	1 cut(s)	724
BstDEI	CTNAG	1 cut(s)	542
BstF5I	GGATG	3 cut(s)	148, 274, 955
BstH2I	RGCGCY	1 cut(s)	990
BstHHI	GCGC	1 cut(s)	989
BstKTI	GATC	2 cut(s)	378, 583
BstMAI	GTCTC	2 cut(s)	88, 123
BstMBI	GATC	2 cut(s)	375, 580
BstMWI	GCNNNNNNNGC	3 cut(s)	61, 214, 470
BstNI	CCWGG	2 cut(s)	25, 71
BstNSI	RCATGY	1 cut(s)	49
BstSCI	CCNGG	2 cut(s)	23, 69
BstSFI	CTRYAG	1 cut(s)	684
BstV1I	GCAGC	2 cut(s)	51, 195
BstX2I	RGATCY	1 cut(s)	375
BstYI	RGATCY	1 cut(s)	375
BsuRI	GGCC	1 cut(s)	701
BtsCI	GGATG	3 cut(s)	148, 274, 955
BtsIMutI	CAGTG	2 cut(s)	539, 678
BveI	ACCTGC	1 cut(s)	69
Cac8I	GCNNGC	1 cut(s)	724
CciI	TCATGA	2 cut(s)	102, 1016
CfoI	GCGC	1 cut(s)	989
Cfr13I	GGNCC	1 cut(s)	746
CsiI	ACCWGGT	1 cut(s)	23
Csp6I	GTAC	1 cut(s)	58
CviAII	CATG	7 cut(s)	38, 46, 103, 163, 372, 601, 1017
CviQI	GTAC	1 cut(s)	58
DdeI	CTNAG	1 cut(s)	542
DpnI	GATC	2 cut(s)	377, 582
DpnII	GATC	2 cut(s)	375, 580
DraIII	CACNNNGTG	1 cut(s)	27
Eam1104I	CTCTTC	1 cut(s)	501
EarI	CTCTTC	1 cut(s)	501
Ecl136II	GAGCTC	1 cut(s)	389
Eco130I	CCWWGG	1 cut(s)	382
Eco24I	GRGCYC	1 cut(s)	391
Eco32I	GATATC	1 cut(s)	642
Eco47I	GGWCC	1 cut(s)	746
Eco47III	AGCGCT	1 cut(s)	988
Eco53kI	GAGCTC	1 cut(s)	389
Eco57I	CTGAAG	1 cut(s)	743
Eco88I	CYCGRG	1 cut(s)	958
EcoICRI	GAGCTC	1 cut(s)	389
EcoRII	CCWGG	2 cut(s)	23, 69
EcoRV	GATATC	1 cut(s)	642
EcoT14I	CCWWGG	1 cut(s)	382
EcoT22I	ATGCAT	1 cut(s)	602
EcoT38I	GRGCYC	1 cut(s)	391
ErhI	CCWWGG	1 cut(s)	382
Esp3I	CGTCTC	2 cut(s)	88, 123
FaeI	CATG	7 cut(s)	41, 49, 106, 166, 375, 604, 1020
FatI	CATG	7 cut(s)	37, 45, 102, 162, 371, 600, 1016
FblI	GTMKAC	1 cut(s)	683
Fnu4HI	GCNGC	3 cut(s)	34, 65, 209
FokI	GGATG	3 cut(s)	155, 281, 962
FriOI	GRGCYC	1 cut(s)	391
Fsp4HI	GCNGC	3 cut(s)	34, 65, 209
FspBI	CTAG	3 cut(s)	321, 623, 996
GlaI	GCGC	1 cut(s)	988
GluI	GCNGC	3 cut(s)	34, 65, 209
GsuI	CTGGAG	1 cut(s)	686
HaeII	RGCGCY	1 cut(s)	990
HaeIII	GGCC	1 cut(s)	701
HhaI	GCGC	1 cut(s)	989
Hin1II	CATG	7 cut(s)	41, 49, 106, 166, 375, 604, 1020
Hin6I	GCGC	1 cut(s)	987
HinP1I	GCGC	1 cut(s)	987
HincII	GTYRAC	1 cut(s)	43
HindII	GTYRAC	1 cut(s)	43
HinfI	GANTC	6 cut(s)	201, 661, 668, 894, 923, 1004
HphI	GGTGA	2 cut(s)	9, 566
Hpy166II	GTNNAC	5 cut(s)	43, 168, 292, 488, 684
Hpy188I	TCNGA	6 cut(s)	460, 503, 639, 762, 805, 893
Hpy188III	TCNNGA	7 cut(s)	103, 650, 665, 845, 974, 996, 1017
Hpy8I	GTNNAC	5 cut(s)	43, 168, 292, 488, 684
HpyAV	CCTTC	2 cut(s)	97, 374
HpyCH4III	ACNGT	1 cut(s)	341
HpyCH4V	TGCA	6 cut(s)	211, 419, 464, 539, 600, 878
HpyF10VI	GCNNNNNNNGC	3 cut(s)	61, 214, 470
HpyF3I	CTNAG	1 cut(s)	542
Hsp92II	CATG	7 cut(s)	41, 49, 106, 166, 375, 604, 1020
HspAI	GCGC	1 cut(s)	987
Kzo9I	GATC	2 cut(s)	375, 580
LmnI	GCTCC	8 cut(s)	30, 72, 151, 366, 386, 456, 770, 934
Lsp1109I	GCAGC	2 cut(s)	51, 195
LweI	GCATC	2 cut(s)	133, 451
MabI	ACCWGGT	1 cut(s)	23
MaeI	CTAG	3 cut(s)	321, 623, 996
MaeIII	GTNAC	1 cut(s)	325
MalI	GATC	2 cut(s)	377, 582
MboI	GATC	2 cut(s)	375, 580
MboII	GAAGA	6 cut(s)	242, 370, 488, 583, 749, 989
MflI	RGATCY	1 cut(s)	375
MhlI	GDGCHC	3 cut(s)	363, 391, 453
MluCI	AATT	4 cut(s)	224, 305, 653, 969
MlyI	GAGTC	4 cut(s)	670, 677, 888, 1013
MnlI	CCTC	9 cut(s)	104, 191, 434, 464, 473, 504, 550, 841, 940
Mph1103I	ATGCAT	1 cut(s)	602
MseI	TTAA	1 cut(s)	656
MslI	CAYNNNNRTG	2 cut(s)	216, 323
MspR9I	CCNGG	2 cut(s)	25, 71
MvaI	CCWGG	2 cut(s)	25, 71
MwoI	GCNNNNNNNGC	3 cut(s)	61, 214, 470
NdeII	GATC	2 cut(s)	375, 580
NlaIII	CATG	7 cut(s)	41, 49, 106, 166, 375, 604, 1020
NlaIV	GGNNCC	1 cut(s)	32
NmuCI	GTSAC	1 cut(s)	325
NsiI	ATGCAT	1 cut(s)	602
NspI	RCATGY	1 cut(s)	49
OliI	CACNNNNGTG	1 cut(s)	323
PagI	TCATGA	2 cut(s)	102, 1016
PcsI	WCGNNNNNNNCGW	1 cut(s)	87
PfeI	GAWTC	2 cut(s)	201, 923
PflMI	CCANNNNNTGG	1 cut(s)	27
PkrI	GCNGC	3 cut(s)	35, 66, 210
PleI	GAGTC	4 cut(s)	669, 676, 888, 1012
PpsI	GAGTC	4 cut(s)	669, 676, 888, 1012
Psp124BI	GAGCTC	1 cut(s)	391
Psp6I	CCWGG	2 cut(s)	23, 69
PspGI	CCWGG	2 cut(s)	23, 69
PspN4I	GGNNCC	1 cut(s)	32
PspPI	GGNCC	1 cut(s)	746
PsuI	RGATCY	1 cut(s)	375
RsaI	GTAC	1 cut(s)	59
RsaNI	GTAC	1 cut(s)	58
RseI	CAYNNNNRTG	2 cut(s)	216, 323
SacI	GAGCTC	1 cut(s)	391
SaqAI	TTAA	1 cut(s)	656
SatI	GCNGC	3 cut(s)	34, 65, 209
Sau3AI	GATC	2 cut(s)	375, 580
Sau96I	GGNCC	1 cut(s)	746
SchI	GAGTC	4 cut(s)	670, 677, 888, 1013
ScrFI	CCNGG	2 cut(s)	25, 71
SduI	GDGCHC	3 cut(s)	363, 391, 453
SexAI	ACCWGGT	1 cut(s)	23
SfaNI	GCATC	2 cut(s)	133, 451
SfcI	CTRYAG	1 cut(s)	684
SinI	GGWCC	1 cut(s)	746
SmiMI	CAYNNNNRTG	2 cut(s)	216, 323
SmlI	CTYRAG	1 cut(s)	944
SmoI	CTYRAG	1 cut(s)	944
SpeI	ACTAGT	1 cut(s)	320
Sse9I	AATT	4 cut(s)	224, 305, 653, 969
SsiI	CCGC	1 cut(s)	34
SspI	AATATT	1 cut(s)	531
SspMI	CTAG	3 cut(s)	321, 623, 996
SstI	GAGCTC	1 cut(s)	391
StyD4I	CCNGG	2 cut(s)	23, 69
StyI	CCWWGG	1 cut(s)	382
TaaI	ACNGT	1 cut(s)	341
TaqI	TCGA	2 cut(s)	391, 975
TasI	AATT	4 cut(s)	224, 305, 653, 969
TauI	GCSGC	1 cut(s)	36
TfiI	GAWTC	2 cut(s)	201, 923
Tru1I	TTAA	1 cut(s)	656
Tru9I	TTAA	1 cut(s)	656
TscAI	CASTG	2 cut(s)	546, 678
TseFI	GTSAC	1 cut(s)	325
TseI	GCWGC	2 cut(s)	64, 208
Tsp45I	GTSAC	1 cut(s)	325
TspDTI	ATGAA	1 cut(s)	996
TspGWI	ACGGA	2 cut(s)	729, 738
TspRI	CASTG	2 cut(s)	546, 678
Van91I	CCANNNNNTGG	1 cut(s)	27
VpaK11BI	GGWCC	1 cut(s)	746
XapI	RAATTY	1 cut(s)	969
XbaI	TCTAGA	1 cut(s)	995
XceI	RCATGY	1 cut(s)	49
XcmI	CCANNNNNNNNNTGG	2 cut(s)	21, 136
XmiI	GTMKAC	1 cut(s)	683
XspI	CTAG	3 cut(s)	321, 623, 996
Zsp2I	ATGCAT	1 cut(s)	602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.