Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0002599

Physical Location & Seq

Genomic Coordinates Reverse (-)

1528444 .. 1531389

Gene Structure 2946 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g01970.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGAACTCGTTCGTTTCGTCTGCCACCAACTGGTGGAGAAGCCACGGAACCTTGCAAACTCTGTACCTGCTGCTGCTGGGTCAGCTCGTCTCCTTCGTTCTGGCAATGATGAGCTTCACTTCCTCACTCATAGCCAGTCTCGGTGTGGATGCGCCTATTACACAGACCATTCCCACTTACTTGGGGTTGGCTTTGGTTTATGGGAGCATTTTGCTGTATAGGCGTGAGAAATTACGGGTTTCTTGGTATTGGTATGTGCTGTTGGGATTTGTTGATGTTCAGGGGAACTATCTTGTTAACAAAGCATACCAGTTCTCATCAATTACAAGTGTGACGCTGTTGGACTGTTTCACAATAGCTTGGGTCTTACTTTTAACATGGATCTTCCTAGGCACTCGGTATTCTCTGTGGCAATTGTTTGGTTCTGCCATCTGTGTTGTGGGACTTGGTTTGGTGCTCCTCTCCGATGCAGGGGTGGGCGGTGGAGGTGGCTCAAAACCTCTCCTAGGGGACATACTCGTCATTGCAGGAACAATTTTCTTCGCTATGAGCAATGTTGGAGAGGAGTTTTGTGTCAAGAAAAAAGATCGCGTTGAAGTAATTTGCATGATTGGTACTTATGGATTTCTAGTGAGTGTGTGTCAGATGTCTATCCTGGAATTACAGACTCTGGAATCCATCGCGTGGTCTGCAGATATTATATTAGCCTGGGCTGGTTATACTCTAGCAGGCATATTGTTCTACACAATTACTCCATTCGTACTCAAGCGGAGTGGAGCCACATTGTTGAATCTGTCTATTCTCACATCTGATATGTGGGCAGTTGTCGTTCGCATCTTTTTCTACCGCCAGCAGGTGGACTGGTTATACTATGTAGCTTTTTCGGTTGTAGTTATCGGTCTCATCATTTATTCACTAACGGAAAAAGATCCTGCTCCGGTAACTTCAGTTGAGAATGGAAATCCGAGCTTGGAATACCGCGTTCTTGAAGATGAAACCGCTGCATCCAGAAACGAGTCTCCAACTGCACGAGAGGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SLC35F

Protein Analysis

347

Amino Acids

38.26

Weight (kDa)

5.13

Isoelectric Point (pI)

28.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002599)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59310 AT3G59310 AT3G59310 AT3G59320 AT3G59320 AT3G59340 AT3G59340 AT3G59340 AT3G59340
fragaria_vesca	FvH4_4g11520 FvH4_6g18390
malus_domestica	MD04G1036800.v1.1 MD14G1020100.v1.1
prunus_persica	Prupe.1G186000_v2.0.a1 Prupe.7G113500_v2.0.a1
pyrus_communis	pycom04g02990 pycom14g01970
rosa_chinensis	RchiOBHm_Chr3g0472881 RchiOBHm_Chr4g0408431
rosa_laevigata	RLG00000008651 RLG00000024049
rosa_multiflora	Rmu_co8481489.1_g000001 Rmu_sc0000787.1_g000011
rosa_roxburghii	Rroxscaffold_5G00352900 Rroxscaffold_6G00408510
rosa_rugosa	Rorug03G0128900 Rorug03G0129000 Rorug03G0129100 Rorug04G0085800 Rorug04G0085900
rosa_samantha	Rh3AG181100 Rh3BG207300 Rh3CG204500 Rh3DG168500 Rh4AG150500 Rh4BG147800 Rh4CG157800 Rh4DG143400
rosa_wichuraiana	Rw3G016200 Rw4G012290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	844
AasI	GACNNNNNNGTC	1 cut(s)	518
Acc36I	ACCTGC	2 cut(s)	75, 844
AccB7I	CCANNNNNTGG	4 cut(s)	30, 33, 684, 856
AccII	CGCG	3 cut(s)	591, 683, 981
AciI	CCGC	5 cut(s)	480, 769, 847, 979, 999
AclWI	GGATC	2 cut(s)	389, 923
AcuI	CTGAAG	1 cut(s)	930
AfaI	GTAC	3 cut(s)	65, 616, 762
AfiI	CCNNNNNNNGG	7 cut(s)	30, 33, 471, 506, 684, 853, 856
AgsI	TTSAA	3 cut(s)	596, 790, 989
AjnI	CCWGG	2 cut(s)	654, 707
AluBI	AGCT	5 cut(s)	85, 114, 359, 878, 969
AluI	AGCT	5 cut(s)	85, 114, 359, 878, 969
Alw21I	GWGCWC	1 cut(s)	459
Alw26I	GTCTC	4 cut(s)	94, 143, 905, 1023
AlwI	GGATC	2 cut(s)	389, 923
AlwNI	CAGNNNCTG	1 cut(s)	670
ApeKI	GCWGC	3 cut(s)	70, 73, 1001
Asp700I	GAANNNNTTC	1 cut(s)	8
AspA2I	CCTAGG	2 cut(s)	388, 505
AspLEI	GCGC	1 cut(s)	154
AvrII	CCTAGG	2 cut(s)	388, 505
BauI	CACGAG	1 cut(s)	1029
Bbv12I	GWGCWC	1 cut(s)	459
BbvI	GCAGC	3 cut(s)	57, 60, 988
BccI	CCATC	2 cut(s)	437, 686
BciT130I	CCWGG	2 cut(s)	656, 709
BcoDI	GTCTC	4 cut(s)	94, 143, 905, 1023
BfaI	CTAG	4 cut(s)	389, 506, 629, 725
BfmI	CTRYAG	1 cut(s)	690
BfuAI	ACCTGC	2 cut(s)	75, 844
BisI	GCNGC	3 cut(s)	71, 74, 1002
BlnI	CCTAGG	2 cut(s)	388, 505
BlsI	GCNGC	3 cut(s)	72, 75, 1003
Bme1390I	CCNGG	2 cut(s)	656, 709
BmiI	GGNNCC	2 cut(s)	49, 778
BmrFI	CCNGG	2 cut(s)	656, 709
BmsI	GCATC	4 cut(s)	139, 457, 843, 1013
BpuEI	CTTGAG	1 cut(s)	749
BsaBI	GATNNNNATC	1 cut(s)	650
BsaI	GGTCTC	1 cut(s)	905
BsaJI	CCNNGG	4 cut(s)	43, 388, 505, 708
BsaWI	WCCGGW	1 cut(s)	937
BsaXI	ACNNNNNCTCC	2 cut(s)	736, 766
Bsc4I	CCNNNNNNNGG	7 cut(s)	30, 33, 471, 506, 684, 853, 856
Bse1I	ACTGG	4 cut(s)	35, 135, 310, 866
Bse3DI	GCAATG	3 cut(s)	111, 522, 559
Bse8I	GATNNNNATC	1 cut(s)	650
BseBI	CCWGG	2 cut(s)	656, 709
BseDI	CCNNGG	4 cut(s)	43, 388, 505, 708
BseGI	GGATG	2 cut(s)	154, 1004
BseJI	GATNNNNATC	1 cut(s)	650
BseLI	CCNNNNNNNGG	7 cut(s)	30, 33, 471, 506, 684, 853, 856
BseMI	GCAATG	3 cut(s)	111, 522, 559
BseNI	ACTGG	4 cut(s)	35, 135, 310, 866
BseRI	GAGGAG	2 cut(s)	449, 578
BseXI	GCAGC	3 cut(s)	57, 60, 988
BseYI	CCCAGC	1 cut(s)	76
BsgI	GTGCAG	1 cut(s)	1011
Bsh1236I	CGCG	3 cut(s)	591, 683, 981
BsiHKAI	GWGCWC	1 cut(s)	459
BsiSI	CCGG	1 cut(s)	938
BslFI	GGGAC	2 cut(s)	456, 524
BslI	CCNNNNNNNGG	7 cut(s)	30, 33, 471, 506, 684, 853, 856
BsmAI	GTCTC	4 cut(s)	94, 143, 905, 1023
BsmBI	CGTCTC	1 cut(s)	94
BsmFI	GGGAC	2 cut(s)	456, 524
Bso31I	GGTCTC	1 cut(s)	905
Bsp1286I	GDGCHC	1 cut(s)	459
Bsp143I	GATC	3 cut(s)	381, 586, 928
BspACI	CCGC	5 cut(s)	480, 769, 847, 979, 999
BspFNI	CGCG	3 cut(s)	591, 683, 981
BspLI	GGNNCC	2 cut(s)	49, 778
BspMAI	CTGCAG	1 cut(s)	694
BspMI	ACCTGC	2 cut(s)	75, 844
BspPI	GGATC	2 cut(s)	389, 923
BspTNI	GGTCTC	1 cut(s)	905
BsrDI	GCAATG	3 cut(s)	111, 522, 559
BsrI	ACTGG	4 cut(s)	35, 135, 310, 866
BssECI	CCNNGG	4 cut(s)	43, 388, 505, 708
BssMI	GATC	3 cut(s)	381, 586, 928
BssSI	CACGAG	1 cut(s)	1029
BssT1I	CCWWGG	2 cut(s)	388, 505
Bst2BI	CACGAG	1 cut(s)	1029
Bst2UI	CCWGG	2 cut(s)	656, 709
Bst4CI	ACNGT	1 cut(s)	347
BstC8I	GCNNGC	2 cut(s)	730, 851
BstDSI	CCRYGG	1 cut(s)	43
BstENI	CCTNNNNNAGG	1 cut(s)	504
BstF5I	GGATG	2 cut(s)	154, 1004
BstFNI	CGCG	3 cut(s)	591, 683, 981
BstHHI	GCGC	1 cut(s)	154
BstKTI	GATC	3 cut(s)	384, 589, 931
BstMAI	GTCTC	4 cut(s)	94, 143, 905, 1023
BstMBI	GATC	3 cut(s)	381, 586, 928
BstMWI	GCNNNNNNNGC	4 cut(s)	82, 220, 689, 1034
BstNI	CCWGG	2 cut(s)	656, 709
BstSCI	CCNGG	2 cut(s)	654, 707
BstSFI	CTRYAG	1 cut(s)	690
BstUI	CGCG	3 cut(s)	591, 683, 981
BstV1I	GCAGC	3 cut(s)	57, 60, 988
BstX2I	RGATCY	2 cut(s)	381, 928
BstXI	CCANNNNNNTGG	1 cut(s)	181
BstYI	RGATCY	2 cut(s)	381, 928
BtgI	CCRYGG	1 cut(s)	43
BtgZI	GCGATG	1 cut(s)	664
BtsCI	GGATG	2 cut(s)	154, 1004
BveI	ACCTGC	2 cut(s)	75, 844
Cac8I	GCNNGC	2 cut(s)	730, 851
CaiI	CAGNNNCTG	1 cut(s)	670
CfoI	GCGC	1 cut(s)	154
CseI	GACGC	1 cut(s)	343
Csp6I	GTAC	3 cut(s)	64, 615, 761
CspCI	CAANNNNNGTGG	2 cut(s)	754, 789
CviAII	CATG	2 cut(s)	378, 607
CviQI	GTAC	3 cut(s)	64, 615, 761
DpnI	GATC	3 cut(s)	383, 588, 930
DpnII	GATC	3 cut(s)	381, 586, 928
DrdI	GACNNNNNNGTC	1 cut(s)	518
DseDI	GACNNNNNNGTC	1 cut(s)	518
Eco130I	CCWWGG	2 cut(s)	388, 505
Eco31I	GGTCTC	1 cut(s)	905
Eco57I	CTGAAG	1 cut(s)	930
EcoNI	CCTNNNNNAGG	1 cut(s)	504
EcoRII	CCWGG	2 cut(s)	654, 707
EcoT14I	CCWWGG	2 cut(s)	388, 505
ErhI	CCWWGG	2 cut(s)	388, 505
Esp3I	CGTCTC	1 cut(s)	94
FaeI	CATG	2 cut(s)	381, 610
FaqI	GGGAC	2 cut(s)	456, 524
FatI	CATG	2 cut(s)	377, 606
Fnu4HI	GCNGC	3 cut(s)	71, 74, 1002
FokI	GGATG	2 cut(s)	161, 991
Fsp4HI	GCNGC	3 cut(s)	71, 74, 1002
FspBI	CTAG	4 cut(s)	389, 506, 629, 725
GlaI	GCGC	1 cut(s)	153
GluI	GCNGC	3 cut(s)	71, 74, 1002
GsaI	CCCAGC	1 cut(s)	80
HapII	CCGG	1 cut(s)	938
HgaI	GACGC	1 cut(s)	343
HhaI	GCGC	1 cut(s)	154
Hin1II	CATG	2 cut(s)	381, 610
Hin6I	GCGC	1 cut(s)	152
HinP1I	GCGC	1 cut(s)	152
HincII	GTYRAC	1 cut(s)	298
HindII	GTYRAC	1 cut(s)	298
HinfI	GANTC	4 cut(s)	667, 674, 790, 1016
HpaI	GTTAAC	1 cut(s)	298
HpaII	CCGG	1 cut(s)	938
Hpy166II	GTNNAC	2 cut(s)	298, 859
Hpy188I	TCNGA	4 cut(s)	466, 645, 811, 966
Hpy188III	TCNNGA	4 cut(s)	577, 671, 986, 1008
Hpy8I	GTNNAC	2 cut(s)	298, 859
HpyAV	CCTTC	1 cut(s)	103
HpyCH4III	ACNGT	1 cut(s)	347
HpyCH4V	TGCA	7 cut(s)	55, 470, 527, 606, 692, 1004, 1028
HpyF10VI	GCNNNNNNNGC	4 cut(s)	82, 220, 689, 1034
Hsp92II	CATG	2 cut(s)	381, 610
HspAI	GCGC	1 cut(s)	152
KspAI	GTTAAC	1 cut(s)	298
Kzo9I	GATC	3 cut(s)	381, 586, 928
LmnI	GCTCC	4 cut(s)	204, 462, 776, 940
Lsp1109I	GCAGC	3 cut(s)	57, 60, 988
LweI	GCATC	4 cut(s)	139, 457, 843, 1013
MaeI	CTAG	4 cut(s)	389, 506, 629, 725
MaeIII	GTNAC	2 cut(s)	331, 940
MalI	GATC	3 cut(s)	383, 588, 930
MboI	GATC	3 cut(s)	381, 586, 928
MboII	GAAGA	3 cut(s)	376, 532, 1001
MfeI	CAATTG	1 cut(s)	413
MflI	RGATCY	2 cut(s)	381, 928
MhlI	GDGCHC	1 cut(s)	459
MluCI	AATT	7 cut(s)	230, 321, 413, 534, 600, 659, 747
MlyI	GAGTC	2 cut(s)	661, 1025
MmeI	TCCRAC	2 cut(s)	321, 538
MnlI	CCTC	6 cut(s)	133, 470, 479, 510, 556, 1027
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	2 cut(s)	297, 374
MspA1I	CMGCKG	1 cut(s)	1001
MspI	CCGG	1 cut(s)	938
MspR9I	CCNGG	2 cut(s)	656, 709
MunI	CAATTG	1 cut(s)	413
MvaI	CCWGG	2 cut(s)	656, 709
MvnI	CGCG	3 cut(s)	591, 683, 981
MwoI	GCNNNNNNNGC	4 cut(s)	82, 220, 689, 1034
NdeII	GATC	3 cut(s)	381, 586, 928
NlaIII	CATG	2 cut(s)	381, 610
NlaIV	GGNNCC	2 cut(s)	49, 778
NmuCI	GTSAC	1 cut(s)	331
PaqCI	CACCTGC	1 cut(s)	844
PcsI	WCGNNNNNNNCGW	2 cut(s)	14, 93
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	2 cut(s)	674, 790
PflMI	CCANNNNNTGG	4 cut(s)	30, 33, 684, 856
PfoI	TCCNGGA	1 cut(s)	654
PkrI	GCNGC	3 cut(s)	72, 75, 1003
PleI	GAGTC	2 cut(s)	661, 1024
PpsI	GAGTC	2 cut(s)	661, 1024
Psp6I	CCWGG	2 cut(s)	654, 707
PspFI	CCCAGC	1 cut(s)	76
PspGI	CCWGG	2 cut(s)	654, 707
PspN4I	GGNNCC	2 cut(s)	49, 778
PstI	CTGCAG	1 cut(s)	694
PstNI	CAGNNNCTG	1 cut(s)	670
PsuI	RGATCY	2 cut(s)	381, 928
RsaI	GTAC	3 cut(s)	65, 616, 762
RsaNI	GTAC	3 cut(s)	64, 615, 761
SaqAI	TTAA	2 cut(s)	297, 374
SatI	GCNGC	3 cut(s)	71, 74, 1002
Sau3AI	GATC	3 cut(s)	381, 586, 928
SchI	GAGTC	2 cut(s)	661, 1025
ScrFI	CCNGG	2 cut(s)	656, 709
SduI	GDGCHC	1 cut(s)	459
SfaNI	GCATC	4 cut(s)	139, 457, 843, 1013
SfcI	CTRYAG	1 cut(s)	690
SmlI	CTYRAG	1 cut(s)	764
SmoI	CTYRAG	1 cut(s)	764
Sse9I	AATT	7 cut(s)	230, 321, 413, 534, 600, 659, 747
SsiI	CCGC	5 cut(s)	480, 769, 847, 979, 999
SspMI	CTAG	4 cut(s)	389, 506, 629, 725
StyD4I	CCNGG	2 cut(s)	654, 707
StyI	CCWWGG	2 cut(s)	388, 505
TaaI	ACNGT	1 cut(s)	347
TaqII	GACCGA	1 cut(s)	887
TasI	AATT	7 cut(s)	230, 321, 413, 534, 600, 659, 747
TfiI	GAWTC	2 cut(s)	674, 790
Tru1I	TTAA	2 cut(s)	297, 374
Tru9I	TTAA	2 cut(s)	297, 374
TseFI	GTSAC	1 cut(s)	331
TseI	GCWGC	3 cut(s)	70, 73, 1001
Tsp45I	GTSAC	1 cut(s)	331
TspDTI	ATGAA	2 cut(s)	17, 1008
TspGWI	ACGGA	2 cut(s)	60, 935
Van91I	CCANNNNNTGG	4 cut(s)	30, 33, 684, 856
XagI	CCTNNNNNAGG	1 cut(s)	504
XcmI	CCANNNNNNNNNTGG	2 cut(s)	142, 436
XmaJI	CCTAGG	2 cut(s)	388, 505
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	4 cut(s)	389, 506, 629, 725

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.