Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002599

Physical Location & Seq

Genomic Coordinates Reverse (-)

10466031 .. 10467025

Gene Structure 995 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0128900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGCTGAGGAAGAAGCAGTGAAGCTGTTTGGCACTTGGAGAAGCCCTTTTAGCCGCAGAGTGGAAATAGCTCTGAAGCTCAAAGGTGTCGACTTCAAATACTATGAAGAGGATTTGATCAACAAGAGCCATCTGCTTCTCAAATATAACCCAGTTCACAAGAAGATTCATTGCCTGCCTGCGATAGAGGAAGCTTGCTTGAGGAGTGTAGACCGTGAGAAGGCTGTGGACGAAGCATGCGAGCTTCTAAAAATACTCGAAAATGAGCTCAAAGACAACAAGTTCTTTAGGGGAGAGACTATTGGACTGGTGGATATTGTCGCTAGTGTCATGAGCTGCTGGCTCAAAGCTTTTCAACAAGTTGCGGGAGTAGAGCTGTTAACCAAAGAGAAACTTCCCAAGCTTTGTGAATGGAGTGATGAGTTTGTCAGCCATGCTGTTATTAAGGGATGTCTACCTCCAAGTGATAAGCTACTTGCTTCACTCCGTGCTCACTTTGAAATTGTTGCATCCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SLC35F

Protein Analysis

172

Amino Acids

19.62

Weight (kDa)

6.53

Isoelectric Point (pI)

50.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	6 - 55	8.4e-06	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	15 - 86	1.1e-06	Glutathione S-transferase, N-terminal domain
GST_C	PF00043	71 - 144	2.6e-10	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002599)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59310 AT3G59310 AT3G59310 AT3G59320 AT3G59320 AT3G59340 AT3G59340 AT3G59340 AT3G59340
fragaria_vesca	FvH4_4g11520 FvH4_6g18390
malus_domestica	MD04G1036800.v1.1 MD14G1020100.v1.1
prunus_persica	Prupe.1G186000_v2.0.a1 Prupe.7G113500_v2.0.a1
pyrus_communis	pycom04g02990 pycom14g01970
rosa_chinensis	RchiOBHm_Chr3g0472881 RchiOBHm_Chr4g0408431
rosa_laevigata	RLG00000008651 RLG00000024049
rosa_multiflora	Rmu_co8481489.1_g000001 Rmu_sc0000787.1_g000011
rosa_roxburghii	Rroxscaffold_5G00352900 Rroxscaffold_6G00408510
rosa_rugosa	Rorug03G0128900 Rorug03G0129000 Rorug03G0129100 Rorug04G0085800 Rorug04G0085900
rosa_samantha	Rh3AG181100 Rh3BG207300 Rh3CG204500 Rh3DG168500 Rh4AG150500 Rh4BG147800 Rh4CG157800 Rh4DG143400
rosa_wichuraiana	Rw3G016200 Rw4G012290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	90, 210, 454
AciI	CCGC	2 cut(s)	55, 365
AcuI	CTGAAG	1 cut(s)	95
AdeI	CACNNNGTG	1 cut(s)	488
AfiI	CCNNNNNNNGG	2 cut(s)	61, 220
AgsI	TTSAA	3 cut(s)	97, 356, 500
Alw21I	GWGCWC	2 cut(s)	270, 493
Alw26I	GTCTC	1 cut(s)	290
ApeKI	GCWGC	1 cut(s)	336
BanII	GRGCYC	1 cut(s)	270
Bbv12I	GWGCWC	2 cut(s)	270, 493
BbvCI	CCTCAGC	1 cut(s)	6
BbvI	GCAGC	1 cut(s)	323
BccI	CCATC	1 cut(s)	138
BclI	TGATCA	1 cut(s)	117
BcoDI	GTCTC	1 cut(s)	290
BfaI	CTAG	1 cut(s)	324
BisI	GCNGC	2 cut(s)	55, 337
BlsI	GCNGC	2 cut(s)	56, 338
BmrI	ACTGGG	1 cut(s)	146
BmuI	ACTGGG	1 cut(s)	146
Bpu10I	CCTNAGC	1 cut(s)	6
BpuEI	CTTGAG	1 cut(s)	220
Bsc4I	CCNNNNNNNGG	2 cut(s)	61, 220
Bse1I	ACTGG	2 cut(s)	152, 312
Bse3DI	GCAATG	1 cut(s)	169
BseGI	GGATG	2 cut(s)	455, 509
BseLI	CCNNNNNNNGG	2 cut(s)	61, 220
BseMI	GCAATG	1 cut(s)	169
BseNI	ACTGG	2 cut(s)	152, 312
BseRI	GAGGAG	1 cut(s)	217
BseXI	GCAGC	1 cut(s)	323
BsiHKAI	GWGCWC	2 cut(s)	270, 493
BslI	CCNNNNNNNGG	2 cut(s)	61, 220
BsmAI	GTCTC	1 cut(s)	290
Bsp1286I	GDGCHC	2 cut(s)	270, 493
Bsp143I	GATC	1 cut(s)	117
BspACI	CCGC	2 cut(s)	55, 365
BspHI	TCATGA	1 cut(s)	330
BsrDI	GCAATG	1 cut(s)	169
BsrI	ACTGG	2 cut(s)	152, 312
BssMI	GATC	1 cut(s)	117
Bst4CI	ACNGT	1 cut(s)	215
Bst6I	CTCTTC	1 cut(s)	102
BstC8I	GCNNGC	6 cut(s)	176, 180, 196, 238, 242, 341
BstDEI	CTNAG	1 cut(s)	6
BstF5I	GGATG	2 cut(s)	455, 509
BstKTI	GATC	1 cut(s)	120
BstMAI	GTCTC	1 cut(s)	290
BstMBI	GATC	1 cut(s)	117
BstMWI	GCNNNNNNNGC	1 cut(s)	51
BstNSI	RCATGY	1 cut(s)	240
BstV1I	GCAGC	1 cut(s)	323
BtsCI	GGATG	2 cut(s)	455, 509
BtsI	GCAGTG	1 cut(s)	24
BtsIMutI	CAGTG	1 cut(s)	24
Cac8I	GCNNGC	6 cut(s)	176, 180, 196, 238, 242, 341
CciI	TCATGA	1 cut(s)	330
CviAII	CATG	3 cut(s)	237, 331, 434
DdeI	CTNAG	1 cut(s)	6
DpnI	GATC	1 cut(s)	119
DpnII	GATC	1 cut(s)	117
DraIII	CACNNNGTG	1 cut(s)	488
Eam1104I	CTCTTC	1 cut(s)	102
EarI	CTCTTC	1 cut(s)	102
Ecl136II	GAGCTC	1 cut(s)	268
Eco24I	GRGCYC	1 cut(s)	270
Eco53kI	GAGCTC	1 cut(s)	268
Eco57I	CTGAAG	1 cut(s)	95
EcoICRI	GAGCTC	1 cut(s)	268
EcoT38I	GRGCYC	1 cut(s)	270
FaeI	CATG	3 cut(s)	240, 334, 437
FaiI	YATR	5 cut(s)	105, 147, 238, 332, 435
FalI	AAGNNNNNCTT	2 cut(s)	378, 410
FatI	CATG	3 cut(s)	236, 330, 433
FauI	CCCGC	1 cut(s)	358
FbaI	TGATCA	1 cut(s)	117
FblI	GTMKAC	3 cut(s)	90, 210, 454
Fnu4HI	GCNGC	2 cut(s)	55, 337
FokI	GGATG	2 cut(s)	462, 496
FriOI	GRGCYC	1 cut(s)	270
Fsp4HI	GCNGC	2 cut(s)	55, 337
FspBI	CTAG	1 cut(s)	324
GluI	GCNGC	2 cut(s)	55, 337
Hin1II	CATG	3 cut(s)	240, 334, 437
HincII	GTYRAC	2 cut(s)	91, 381
HindII	GTYRAC	2 cut(s)	91, 381
HindIII	AAGCTT	3 cut(s)	192, 348, 401
HinfI	GANTC	1 cut(s)	166
HpaI	GTTAAC	1 cut(s)	381
Hpy166II	GTNNAC	6 cut(s)	91, 157, 211, 229, 381, 455
Hpy188I	TCNGA	1 cut(s)	75
Hpy188III	TCNNGA	1 cut(s)	331
Hpy8I	GTNNAC	6 cut(s)	91, 157, 211, 229, 381, 455
HpyAV	CCTTC	1 cut(s)	214
HpyCH4III	ACNGT	1 cut(s)	215
HpyCH4V	TGCA	1 cut(s)	509
HpyF10VI	GCNNNNNNNGC	1 cut(s)	51
HpyF3I	CTNAG	1 cut(s)	6
Hsp92II	CATG	3 cut(s)	240, 334, 437
Ksp22I	TGATCA	1 cut(s)	117
KspAI	GTTAAC	1 cut(s)	381
Kzo9I	GATC	1 cut(s)	117
LpnPI	CCDG	5 cut(s)	165, 188, 192, 293, 325
Lsp1109I	GCAGC	1 cut(s)	323
MaeI	CTAG	1 cut(s)	324
MalI	GATC	1 cut(s)	119
MboI	GATC	1 cut(s)	117
MboII	GAAGA	3 cut(s)	23, 119, 175
MhlI	GDGCHC	2 cut(s)	270, 493
MluCI	AATT	1 cut(s)	501
MnlI	CCTC	4 cut(s)	103, 181, 195, 468
MseI	TTAA	2 cut(s)	380, 444
MwoI	GCNNNNNNNGC	1 cut(s)	51
NdeII	GATC	1 cut(s)	117
NlaIII	CATG	3 cut(s)	240, 334, 437
NspI	RCATGY	1 cut(s)	240
PaeI	GCATGC	1 cut(s)	240
PagI	TCATGA	1 cut(s)	330
PcsI	WCGNNNNNNNCGW	1 cut(s)	237
PfeI	GAWTC	1 cut(s)	166
PkrI	GCNGC	2 cut(s)	56, 338
Psp124BI	GAGCTC	1 cut(s)	270
SacI	GAGCTC	1 cut(s)	270
SalI	GTCGAC	1 cut(s)	89
SaqAI	TTAA	2 cut(s)	380, 444
SatI	GCNGC	2 cut(s)	55, 337
Sau3AI	GATC	1 cut(s)	117
SduI	GDGCHC	2 cut(s)	270, 493
SmlI	CTYRAG	1 cut(s)	199
SmoI	CTYRAG	1 cut(s)	199
SphI	GCATGC	1 cut(s)	240
Sse9I	AATT	1 cut(s)	501
SsiI	CCGC	2 cut(s)	55, 365
SspMI	CTAG	1 cut(s)	324
SstI	GAGCTC	1 cut(s)	270
TaaI	ACNGT	1 cut(s)	215
TaqI	TCGA	2 cut(s)	90, 258
TasI	AATT	1 cut(s)	501
TauI	GCSGC	1 cut(s)	57
TfiI	GAWTC	1 cut(s)	166
Tru1I	TTAA	2 cut(s)	380, 444
Tru9I	TTAA	2 cut(s)	380, 444
TscAI	CASTG	1 cut(s)	24
TseI	GCWGC	1 cut(s)	336
TspDTI	ATGAA	2 cut(s)	120, 158
TspGWI	ACGGA	1 cut(s)	476
TspRI	CASTG	1 cut(s)	24
XceI	RCATGY	1 cut(s)	240
XmiI	GTMKAC	3 cut(s)	90, 210, 454
XspI	CTAG	1 cut(s)	324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.