Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0002599

Physical Location & Seq

Genomic Coordinates Forward (+)

4100110 .. 4106848

Gene Structure 6739 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1036800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGGCAAACATGATGAGGTTTAAAGATTTTTGGGTAAAGAAGACACTGGTGGGTCTTGGGTTGGGCCAGTTTCTCTCGCTTTTGATCACTTCTACAGGCTTTTCATCATCTGAGCTTGCCAAAAAAGGAATTAATGTTCCTACTTCACAGTCTTTTCTGAACTATGTGCTCTTGGCAATTGTATATGGAGGTATCATGCTTTACCGAAGGAAGCCACTTAAGGCTAAATGGTATTATTATGTGCTTCTGGGAATAGTGGACGTGGAGGCAAATTTTCTAGTGGTGAAGGCTTATCAATACACATCTATAACAAGCGTAATGCTGCTGGATTGTTGGTCTATCCCATGCGTTATGCTTCTTACTTGGCTTTTCTTAAAAACAAAATATAGATTTGCAAAGATAACTGGTGTGGTGGTTTGTGTTGCTGGGCTAGTCATGGTTGTTTTTTCAGATGTTCATGCAGGTGACCGAGCAGGAGGGAGCAAGCCCAGTGTAGGAGATGCCCTAGTAATTGCTGGTGCTACGCTATATGCTGTCAGTAATGTCAGTGAGGAGTTTCTAGTAAAGAATGCCGACAGGGTTGAACTTATGTCCATGCTGGGCTTGTTTGGTGCCTTCGTCAGTGCTATCCAAATGAGCATACTGGAGCGCCATGAGCTCAAATCCATTCACTGGTCGTCTGGGGCAGTACTTCCTTTTGTTGGATTTTCAGTGGCTATGTTCCTGTTTTACTCATTTGTCCCAGTCTTACTGAAGGCTAATGGATCCACAATGTTAAACCTCTCGTTGCTAACCTCAGACATGTGGGCAGTCTTAATTCGCATTTTTGCGTACCATGAGAAGGTTGATTGGATGTACTTTGTGGCCTTTGCTGGCGTTTGTGTTGGGCTTGTTATTTATTCGGGGGGTGAAGAGGAGGATCAACGCCGTGCTGATGTTGCGGATGAAAATGCAGAGCGAAGCAAACATTTTGACGAGGAAGCTGGTCCAGTAGGCCGAGGAACAGGGGCCGGAACCTCAAAATCTGGGGATAGCAGCAGGCATGAGACTGTTACTGGTAGCAGTACAGAAAGGGAAGTAGCTGACAGCAAGAGCGTAGGAAAATATGTACAAGGGAGGAAATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SLC35F

Protein Analysis

376

Amino Acids

41.16

Weight (kDa)

8.69

Isoelectric Point (pI)

23.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SLC35F	PF06027	13 - 301	7.6e-136	Solute carrier family 35
EamA	PF00892	24 - 148	8e-09	EamA-like transporter family
CRT-like	PF08627	76 - 214	2.5e-10	CRT-like, chloroquine-resistance transporter-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002599)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59310 AT3G59310 AT3G59310 AT3G59320 AT3G59320 AT3G59340 AT3G59340 AT3G59340 AT3G59340
fragaria_vesca	FvH4_4g11520 FvH4_6g18390
malus_domestica	MD04G1036800.v1.1 MD14G1020100.v1.1
prunus_persica	Prupe.1G186000_v2.0.a1 Prupe.7G113500_v2.0.a1
pyrus_communis	pycom04g02990 pycom14g01970
rosa_chinensis	RchiOBHm_Chr3g0472881 RchiOBHm_Chr4g0408431
rosa_laevigata	RLG00000008651 RLG00000024049
rosa_multiflora	Rmu_co8481489.1_g000001 Rmu_sc0000787.1_g000011
rosa_roxburghii	Rroxscaffold_5G00352900 Rroxscaffold_6G00408510
rosa_rugosa	Rorug03G0128900 Rorug03G0129000 Rorug03G0129100 Rorug04G0085800 Rorug04G0085900
rosa_samantha	Rh3AG181100 Rh3BG207300 Rh3CG204500 Rh3DG168500 Rh4AG150500 Rh4BG147800 Rh4CG157800 Rh4DG143400
rosa_wichuraiana	Rw3G016200 Rw4G012290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	452
Acc36I	ACCTGC	1 cut(s)	452
AccB1I	GGYRCC	1 cut(s)	611
AccB7I	CCANNNNNTGG	1 cut(s)	672
AciI	CCGC	1 cut(s)	941
AclWI	GGATC	3 cut(s)	759, 772, 927
AcsI	RAATTY	1 cut(s)	271
AcuI	CTGAAG	1 cut(s)	773
AfaI	GTAC	5 cut(s)	690, 833, 857, 1066, 1110
AfiI	CCNNNNNNNGG	4 cut(s)	494, 672, 701, 841
AflII	CTTAAG	1 cut(s)	218
AflIII	ACRYGT	1 cut(s)	801
AgsI	TTSAA	1 cut(s)	584
AjiI	CACGTC	1 cut(s)	262
AloI	GAACNNNNNNTCC	2 cut(s)	120, 152
AluBI	AGCT	4 cut(s)	115, 658, 983, 1082
AluI	AGCT	4 cut(s)	115, 658, 983, 1082
Alw21I	GWGCWC	2 cut(s)	171, 660
Alw26I	GTCTC	1 cut(s)	1040
AlwI	GGATC	3 cut(s)	759, 772, 927
AoxI	GGCC	4 cut(s)	64, 864, 994, 1008
ApeKI	GCWGC	2 cut(s)	322, 1035
ApoI	RAATTY	1 cut(s)	271
AseI	ATTAAT	1 cut(s)	132
AspLEI	GCGC	1 cut(s)	651
AspS9I	GGNCC	3 cut(s)	64, 986, 1008
AsuHPI	GGTGA	3 cut(s)	295, 476, 920
AvaII	GGWCC	1 cut(s)	986
BamHI	GGATCC	1 cut(s)	764
BanI	GGYRCC	1 cut(s)	611
BanII	GRGCYC	1 cut(s)	660
BbsI	GAAGAC	1 cut(s)	47
Bbv12I	GWGCWC	2 cut(s)	171, 660
BbvI	GCAGC	2 cut(s)	309, 1047
BceAI	ACGGC	1 cut(s)	912
BclI	TGATCA	1 cut(s)	84
BcoDI	GTCTC	1 cut(s)	1040
BfaI	CTAG	4 cut(s)	278, 431, 506, 560
BfmI	CTRYAG	1 cut(s)	93
BfoI	RGCGCY	1 cut(s)	652
BfrI	CTTAAG	1 cut(s)	218
BfuAI	ACCTGC	1 cut(s)	452
BisI	GCNGC	2 cut(s)	323, 1036
BlsI	GCNGC	2 cut(s)	324, 1037
BmcAI	AGTACT	1 cut(s)	690
Bme18I	GGWCC	1 cut(s)	986
BmgBI	CACGTC	1 cut(s)	262
BmgT120I	GGNCC	3 cut(s)	64, 986, 1008
BmiI	GGNNCC	4 cut(s)	613, 766, 1009, 1015
BmrI	ACTGGG	2 cut(s)	483, 737
BmsI	GCATC	1 cut(s)	490
BmuI	ACTGGG	2 cut(s)	483, 737
BpiI	GAAGAC	1 cut(s)	47
BpmI	CTGGAG	1 cut(s)	665
BsaJI	CCNNGG	1 cut(s)	997
Bsc4I	CCNNNNNNNGG	4 cut(s)	494, 672, 701, 841
Bse1I	ACTGG	9 cut(s)	51, 67, 409, 489, 648, 677, 743, 989, 1060
BseDI	CCNNGG	1 cut(s)	997
BseGI	GGATG	2 cut(s)	858, 949
BseLI	CCNNNNNNNGG	4 cut(s)	494, 672, 701, 841
BseMII	CTCAG	2 cut(s)	102, 810
BseNI	ACTGG	9 cut(s)	51, 67, 409, 489, 648, 677, 743, 989, 1060
BseRI	GAGGAG	2 cut(s)	566, 929
BseXI	GCAGC	2 cut(s)	309, 1047
BseYI	CCCAGC	2 cut(s)	425, 598
BshFI	GGCC	4 cut(s)	66, 866, 996, 1010
BshNI	GGYRCC	1 cut(s)	611
BsiHKAI	GWGCWC	2 cut(s)	171, 660
BsiSI	CCGG	1 cut(s)	1011
BslFI	GGGAC	1 cut(s)	725
BslI	CCNNNNNNNGG	4 cut(s)	494, 672, 701, 841
BsmAI	GTCTC	1 cut(s)	1040
BsmFI	GGGAC	1 cut(s)	725
BsmI	GAATGC	1 cut(s)	574
BsnI	GGCC	4 cut(s)	66, 866, 996, 1010
Bsp1286I	GDGCHC	2 cut(s)	171, 660
Bsp1407I	TGTACA	1 cut(s)	1108
Bsp143I	GATC	3 cut(s)	84, 764, 919
BspACI	CCGC	1 cut(s)	941
BspANI	GGCC	4 cut(s)	66, 866, 996, 1010
BspCNI	CTCAG	2 cut(s)	103, 809
BspHI	TCATGA	1 cut(s)	1124
BspLI	GGNNCC	4 cut(s)	613, 766, 1009, 1015
BspMI	ACCTGC	1 cut(s)	452
BspPI	GGATC	3 cut(s)	759, 772, 927
BspT107I	GGYRCC	1 cut(s)	611
BspTI	CTTAAG	1 cut(s)	218
BsrGI	TGTACA	1 cut(s)	1108
BsrI	ACTGG	9 cut(s)	51, 67, 409, 489, 648, 677, 743, 989, 1060
BssECI	CCNNGG	1 cut(s)	997
BssMI	GATC	3 cut(s)	84, 764, 919
Bst4CI	ACNGT	2 cut(s)	150, 1051
Bst6I	CTCTTC	1 cut(s)	906
BstAFI	CTTAAG	1 cut(s)	218
BstAUI	TGTACA	1 cut(s)	1108
BstC8I	GCNNGC	4 cut(s)	117, 485, 874, 1040
BstDEI	CTNAG	2 cut(s)	111, 796
BstEII	GGTNACC	1 cut(s)	464
BstF5I	GGATG	2 cut(s)	858, 949
BstH2I	RGCGCY	1 cut(s)	652
BstHHI	GCGC	1 cut(s)	651
BstKTI	GATC	3 cut(s)	87, 767, 922
BstMAI	GTCTC	1 cut(s)	1040
BstMBI	GATC	3 cut(s)	84, 764, 919
BstMWI	GCNNNNNNNGC	2 cut(s)	655, 938
BstNSI	RCATGY	1 cut(s)	805
BstPI	GGTNACC	1 cut(s)	464
BstSFI	CTRYAG	1 cut(s)	93
BstV1I	GCAGC	2 cut(s)	309, 1047
BstV2I	GAAGAC	1 cut(s)	47
BstX2I	RGATCY	1 cut(s)	764
BstYI	RGATCY	1 cut(s)	764
BsuRI	GGCC	4 cut(s)	66, 866, 996, 1010
BtrI	CACGTC	1 cut(s)	262
BtsCI	GGATG	2 cut(s)	858, 949
BtsIMutI	CAGTG	6 cut(s)	44, 496, 553, 628, 670, 717
BveI	ACCTGC	1 cut(s)	452
Cac8I	GCNNGC	4 cut(s)	117, 485, 874, 1040
CciI	TCATGA	1 cut(s)	1124
CfoI	GCGC	1 cut(s)	651
Cfr13I	GGNCC	3 cut(s)	64, 986, 1008
Csp6I	GTAC	5 cut(s)	689, 832, 856, 1065, 1109
CviQI	GTAC	5 cut(s)	689, 832, 856, 1065, 1109
DdeI	CTNAG	2 cut(s)	111, 796
DpnI	GATC	3 cut(s)	86, 766, 921
DpnII	GATC	3 cut(s)	84, 764, 919
DraI	TTTAAA	1 cut(s)	22
Eam1104I	CTCTTC	1 cut(s)	906
EarI	CTCTTC	1 cut(s)	906
Ecl136II	GAGCTC	1 cut(s)	658
Eco24I	GRGCYC	1 cut(s)	660
Eco47I	GGWCC	1 cut(s)	986
Eco53kI	GAGCTC	1 cut(s)	658
Eco57I	CTGAAG	1 cut(s)	773
Eco91I	GGTNACC	1 cut(s)	464
EcoICRI	GAGCTC	1 cut(s)	658
EcoO65I	GGTNACC	1 cut(s)	464
EcoT38I	GRGCYC	1 cut(s)	660
FaqI	GGGAC	1 cut(s)	725
FbaI	TGATCA	1 cut(s)	84
Fnu4HI	GCNGC	2 cut(s)	323, 1036
FokI	GGATG	2 cut(s)	865, 956
FriOI	GRGCYC	1 cut(s)	660
Fsp4HI	GCNGC	2 cut(s)	323, 1036
FspBI	CTAG	4 cut(s)	278, 431, 506, 560
GlaI	GCGC	1 cut(s)	650
GluI	GCNGC	2 cut(s)	323, 1036
GsaI	CCCAGC	2 cut(s)	429, 602
GsuI	CTGGAG	1 cut(s)	665
HaeII	RGCGCY	1 cut(s)	652
HaeIII	GGCC	4 cut(s)	66, 866, 996, 1010
HapII	CCGG	1 cut(s)	1011
HhaI	GCGC	1 cut(s)	651
Hin6I	GCGC	1 cut(s)	649
HinP1I	GCGC	1 cut(s)	649
HpaII	CCGG	1 cut(s)	1011
HphI	GGTGA	3 cut(s)	295, 476, 920
Hpy166II	GTNNAC	1 cut(s)	259
Hpy188I	TCNGA	4 cut(s)	112, 159, 451, 799
Hpy188III	TCNNGA	1 cut(s)	1125
Hpy8I	GTNNAC	1 cut(s)	259
HpyAV	CCTTC	5 cut(s)	201, 280, 625, 748, 835
HpyCH4III	ACNGT	2 cut(s)	150, 1051
HpyCH4IV	ACGT	1 cut(s)	261
HpyCH4V	TGCA	3 cut(s)	395, 461, 953
HpyF10VI	GCNNNNNNNGC	2 cut(s)	655, 938
HpyF3I	CTNAG	2 cut(s)	111, 796
HpySE526I	ACGT	1 cut(s)	261
HspAI	GCGC	1 cut(s)	649
Ksp22I	TGATCA	1 cut(s)	84
Kzo9I	GATC	3 cut(s)	84, 764, 919
LmnI	GCTCC	2 cut(s)	480, 646
Lsp1109I	GCAGC	2 cut(s)	309, 1047
LweI	GCATC	1 cut(s)	490
MaeI	CTAG	4 cut(s)	278, 431, 506, 560
MaeII	ACGT	1 cut(s)	261
MaeIII	GTNAC	2 cut(s)	464, 1051
MalI	GATC	3 cut(s)	86, 766, 921
MboI	GATC	3 cut(s)	84, 764, 919
MboII	GAAGA	2 cut(s)	52, 923
MfeI	CAATTG	1 cut(s)	177
MflI	RGATCY	1 cut(s)	764
MhlI	GDGCHC	2 cut(s)	171, 660
MluCI	AATT	5 cut(s)	129, 177, 271, 510, 816
MmeI	TCCRAC	1 cut(s)	682
MseI	TTAA	6 cut(s)	21, 132, 219, 374, 776, 815
MslI	CAYNNNNRTG	1 cut(s)	462
MspCI	CTTAAG	1 cut(s)	218
MspI	CCGG	1 cut(s)	1011
MunI	CAATTG	1 cut(s)	177
Mva1269I	GAATGC	1 cut(s)	574
MwoI	GCNNNNNNNGC	2 cut(s)	655, 938
NdeII	GATC	3 cut(s)	84, 764, 919
NlaIV	GGNNCC	4 cut(s)	613, 766, 1009, 1015
NmeAIII	GCCGAG	1 cut(s)	1022
NmuCI	GTSAC	1 cut(s)	464
NspI	RCATGY	1 cut(s)	805
PagI	TCATGA	1 cut(s)	1124
PaqCI	CACCTGC	1 cut(s)	452
PciI	ACATGT	1 cut(s)	801
PctI	GAATGC	1 cut(s)	574
PflMI	CCANNNNNTGG	1 cut(s)	672
PkrI	GCNGC	2 cut(s)	324, 1037
PscI	ACATGT	1 cut(s)	801
PshBI	ATTAAT	1 cut(s)	132
Psp124BI	GAGCTC	1 cut(s)	660
PspEI	GGTNACC	1 cut(s)	464
PspFI	CCCAGC	2 cut(s)	425, 598
PspN4I	GGNNCC	4 cut(s)	613, 766, 1009, 1015
PspPI	GGNCC	3 cut(s)	64, 986, 1008
PsuI	RGATCY	1 cut(s)	764
RsaI	GTAC	5 cut(s)	690, 833, 857, 1066, 1110
RsaNI	GTAC	5 cut(s)	689, 832, 856, 1065, 1109
RseI	CAYNNNNRTG	1 cut(s)	462
SacI	GAGCTC	1 cut(s)	660
SaqAI	TTAA	6 cut(s)	21, 132, 219, 374, 776, 815
SatI	GCNGC	2 cut(s)	323, 1036
Sau3AI	GATC	3 cut(s)	84, 764, 919
Sau96I	GGNCC	3 cut(s)	64, 986, 1008
ScaI	AGTACT	1 cut(s)	690
SduI	GDGCHC	2 cut(s)	171, 660
SfaNI	GCATC	1 cut(s)	490
SfcI	CTRYAG	1 cut(s)	93
SinI	GGWCC	1 cut(s)	986
SmiMI	CAYNNNNRTG	1 cut(s)	462
SmlI	CTYRAG	1 cut(s)	218
SmoI	CTYRAG	1 cut(s)	218
Sse9I	AATT	5 cut(s)	129, 177, 271, 510, 816
SsiI	CCGC	1 cut(s)	941
SspMI	CTAG	4 cut(s)	278, 431, 506, 560
SstI	GAGCTC	1 cut(s)	660
TaaI	ACNGT	2 cut(s)	150, 1051
TaiI	ACGT	1 cut(s)	264
TaqII	GACCGA	1 cut(s)	483
TasI	AATT	5 cut(s)	129, 177, 271, 510, 816
TatI	WGTACW	4 cut(s)	688, 855, 1064, 1108
Tru1I	TTAA	6 cut(s)	21, 132, 219, 374, 776, 815
Tru9I	TTAA	6 cut(s)	21, 132, 219, 374, 776, 815
TscAI	CASTG	6 cut(s)	51, 496, 553, 628, 677, 717
TseFI	GTSAC	1 cut(s)	464
TseI	GCWGC	2 cut(s)	322, 1035
Tsp45I	GTSAC	1 cut(s)	464
TspDTI	ATGAA	3 cut(s)	93, 446, 960
TspRI	CASTG	6 cut(s)	51, 496, 553, 628, 677, 717
Van91I	CCANNNNNTGG	1 cut(s)	672
Vha464I	CTTAAG	1 cut(s)	218
VpaK11BI	GGWCC	1 cut(s)	986
VspI	ATTAAT	1 cut(s)	132
XapI	RAATTY	1 cut(s)	271
XceI	RCATGY	1 cut(s)	805
XspI	CTAG	4 cut(s)	278, 431, 506, 560
ZrmI	AGTACT	1 cut(s)	690

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.