FvH4_4g11520

Solute carrier family 35 member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0002599
Physical Location & Seq
Forward (+)
15260415 .. 15266965
6551 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g11520.t2

Sequence Viewer

Length: 1089 bp
ATGAGGAATTTGAAAGAGTTGTGGGTGAAGAAGACGTTGGTGGGTCTTGGGTTGGGACAGTTTCTCTCGCTTCTGATCACTTCCACTGGCTTTTCTTCCTCTGAGTTGGCTAAGAAAGGAATCAATGCACCTACTTCACAGTCTTTTCTGAACTATGTCCTCTTAGCAGTTGTGTATGGAAGTATCATGATTTACCAGAGGAAACCACTTAAGGCTAAATGGTATTACTATTTACTTCTTGGGTTGATAGATGTGGAGGCCAATTTTCTAGTGGTGAAGGCTTATCAATACACATCTATAACGAGTGTAATGTTGCTGGATTGTTGGACTATCCCATCGGTCATGCTTCTTACATGGATATTCCTCAATACAAAATATAGATGTAAAAAGATAACCGGTGTGGTGGCCTGTATTGCTGGCCTTGTCATAGCTATTTTCTCAGATGTTCATGCAGGTGACCGATCAGGAGGGAGCAATCCCCTTAAAGGGGATGCACTAGTAATTGCCGGTGCTACACTGTATGCCGTCACTAACGTCAGTGAGGAGTTTCTAGTGAAGAATGCTGACAGAGTTGAACTCATGTCCTTGCTGGGCTTTTTTGGTGCCATTATCAGTGCGATCCAAATAAGCGTAATAGAACGTAATGAGCTCAAATCCATCAAGTGGTCGTCTGGAGCTGCATTTCCTTTTGTTGGATTTTCATTGGCTATGTTCCTCTTTTACTCATTAGTCCCAATCTTACTTAAGATTAATGGATCTACGATGTTAAACCTGTCATTGCTGACATCAGACATGTGGGCAGTCTTAATTCGCATTTTTGCTTACCATCAGAAGGTTGATTGGATGTACTTTGTGGCCTTTGCGATCGTCGTTGTTGGGCTTGTTATTTATTCATGGGGTGACAAGGACGAGGAACAACGCTTGGCTGATGTTACGCATGAAGACGCAGAGAGAAGCAAACGTTTTGATGAGGAAGTCGGTTCAGTAACTCGCAACCGAGGAACAATGGCTGGGACCTCAAAAGCAGGAGGGGATAACAGCAAGGATGAAGCTCCTACTAGCTCTACGTACAGAGAGATAAATCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SLC35F

Protein Analysis

363

Amino Acids

40.08

Weight (kDa)

8.74

Isoelectric Point (pI)

23.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SLC35F PF06027 10 - 209 3.6e-90 Solute carrier family 35
EamA PF00892 22 - 145 2.3e-07 EamA-like transporter family
UAA PF08449 64 - 186 5.1e-07 UAA transporter family
CRT-like PF08627 70 - 205 2.2e-08 CRT-like, chloroquine-resistance transporter-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 443
Acc36I ACCTGC 1 cut(s) 443
AccB1I GGYRCC 1 cut(s) 602
AccB7I CCANNNNNTGG 1 cut(s) 663
AclI AACGTT 1 cut(s) 961
AclWI GGATC 2 cut(s) 613, 763
AcsI RAATTY 1 cut(s) 7
AfaI GTAC 2 cut(s) 848, 1070
AfiI CCNNNNNNNGG 6 cut(s) 485, 486, 487, 663, 692, 832
AflII CTTAAG 2 cut(s) 209, 743
AflIII ACRYGT 1 cut(s) 792
AgeI ACCGGT 1 cut(s) 395
AgsI TTSAA 2 cut(s) 13, 575
AhlI ACTAGT 1 cut(s) 496
AjuI GAANNNNNNNTTGG 2 cut(s) 20, 52
AluBI AGCT 5 cut(s) 431, 649, 677, 1052, 1062
AluI AGCT 5 cut(s) 431, 649, 677, 1052, 1062
Alw21I GWGCWC 1 cut(s) 651
AlwI GGATC 2 cut(s) 613, 763
AoxI GGCC 4 cut(s) 258, 405, 418, 855
ApeKI GCWGC 1 cut(s) 677
ApoI RAATTY 1 cut(s) 7
AseI ATTAAT 1 cut(s) 750
AsiGI ACCGGT 1 cut(s) 395
AspS9I GGNCC 1 cut(s) 1014
AsuHPI GGTGA 4 cut(s) 37, 286, 467, 911
AvaII GGWCC 1 cut(s) 1014
BanI GGYRCC 1 cut(s) 602
BanII GRGCYC 1 cut(s) 651
BbsI GAAGAC 2 cut(s) 38, 948
Bbv12I GWGCWC 1 cut(s) 651
BbvI GCAGC 1 cut(s) 664
BccI CCATC 3 cut(s) 343, 665, 834
BceAI ACGGC 1 cut(s) 509
BclI TGATCA 1 cut(s) 75
BcuI ACTAGT 1 cut(s) 496
BfaI CTAG 4 cut(s) 269, 497, 551, 1059
BfrI CTTAAG 2 cut(s) 209, 743
BfuAI ACCTGC 1 cut(s) 443
BisI GCNGC 1 cut(s) 678
BlsI GCNGC 1 cut(s) 679
Bme18I GGWCC 1 cut(s) 1014
BmgT120I GGNCC 1 cut(s) 1014
BmiI GGNNCC 2 cut(s) 604, 1015
BmsI GCATC 1 cut(s) 481
BpiI GAAGAC 2 cut(s) 38, 948
BplI GAGNNNNNCTC 2 cut(s) 561, 593
BpmI CTGGAG 1 cut(s) 693
BsaAI YACGTR 1 cut(s) 1068
BsaJI CCNNGG 1 cut(s) 997
BsaWI WCCGGW 1 cut(s) 395
Bsc4I CCNNNNNNNGG 6 cut(s) 485, 486, 487, 663, 692, 832
Bse118I RCCGGY 2 cut(s) 395, 506
Bse1I ACTGG 1 cut(s) 91
Bse3DI GCAATG 1 cut(s) 776
BseDI CCNNGG 1 cut(s) 997
BseGI GGATG 3 cut(s) 496, 849, 1051
BseLI CCNNNNNNNGG 6 cut(s) 485, 486, 487, 663, 692, 832
BseMI GCAATG 1 cut(s) 776
BseMII CTCAG 2 cut(s) 93, 453
BseNI ACTGG 1 cut(s) 91
BseRI GAGGAG 1 cut(s) 557
BseXI GCAGC 1 cut(s) 664
BseYI CCCAGC 2 cut(s) 589, 1010
Bsh1285I CGRYCG 1 cut(s) 867
BshFI GGCC 4 cut(s) 260, 407, 420, 857
BshNI GGYRCC 1 cut(s) 602
BshTI ACCGGT 1 cut(s) 395
BsiEI CGRYCG 1 cut(s) 867
BsiHKAI GWGCWC 1 cut(s) 651
BsiSI CCGG 2 cut(s) 396, 507
BslFI GGGAC 3 cut(s) 69, 716, 1027
BslI CCNNNNNNNGG 6 cut(s) 485, 486, 487, 663, 692, 832
BsmFI GGGAC 3 cut(s) 69, 716, 1027
BsmI GAATGC 1 cut(s) 565
BsnI GGCC 4 cut(s) 260, 407, 420, 857
Bsp1286I GDGCHC 1 cut(s) 651
Bsp143I GATC 5 cut(s) 75, 461, 618, 755, 864
BspANI GGCC 4 cut(s) 260, 407, 420, 857
BspCNI CTCAG 2 cut(s) 94, 452
BspHI TCATGA 1 cut(s) 186
BspLI GGNNCC 2 cut(s) 604, 1015
BspMI ACCTGC 1 cut(s) 443
BspPI GGATC 2 cut(s) 613, 763
BspT107I GGYRCC 1 cut(s) 602
BspTI CTTAAG 2 cut(s) 209, 743
BsrDI GCAATG 1 cut(s) 776
BsrFI RCCGGY 2 cut(s) 395, 506
BsrI ACTGG 1 cut(s) 91
BssAI RCCGGY 2 cut(s) 395, 506
BssECI CCNNGG 1 cut(s) 997
BssMI GATC 5 cut(s) 75, 461, 618, 755, 864
Bst4CI ACNGT 3 cut(s) 60, 141, 519
BstAFI CTTAAG 2 cut(s) 209, 743
BstBAI YACGTR 1 cut(s) 1068
BstC8I GCNNGC 1 cut(s) 418
BstDEI CTNAG 4 cut(s) 102, 111, 163, 439
BstEII GGTNACC 1 cut(s) 455
BstF5I GGATG 3 cut(s) 496, 849, 1051
BstKTI GATC 5 cut(s) 78, 464, 621, 758, 867
BstMBI GATC 5 cut(s) 75, 461, 618, 755, 864
BstMCI CGRYCG 1 cut(s) 867
BstMWI GCNNNNNNNGC 1 cut(s) 413
BstNSI RCATGY 1 cut(s) 796
BstPI GGTNACC 1 cut(s) 455
BstSNI TACGTA 1 cut(s) 1068
BstV1I GCAGC 1 cut(s) 664
BstV2I GAAGAC 2 cut(s) 38, 948
BstX2I RGATCY 1 cut(s) 755
BstYI RGATCY 1 cut(s) 755
BsuRI GGCC 4 cut(s) 260, 407, 420, 857
BtsCI GGATG 3 cut(s) 496, 849, 1051
BtsIMutI CAGTG 4 cut(s) 84, 515, 544, 619
BveI ACCTGC 1 cut(s) 443
Cac8I GCNNGC 1 cut(s) 418
CciI TCATGA 1 cut(s) 186
Cfr10I RCCGGY 2 cut(s) 395, 506
Cfr13I GGNCC 1 cut(s) 1014
CseI GACGC 1 cut(s) 953
Csp6I GTAC 2 cut(s) 847, 1069
CspAI ACCGGT 1 cut(s) 395
CviAII CATG 8 cut(s) 187, 343, 354, 449, 580, 793, 894, 938
CviQI GTAC 2 cut(s) 847, 1069
DdeI CTNAG 4 cut(s) 102, 111, 163, 439
DpnI GATC 5 cut(s) 77, 463, 620, 757, 866
DpnII GATC 5 cut(s) 75, 461, 618, 755, 864
Ecl136II GAGCTC 1 cut(s) 649
Eco105I TACGTA 1 cut(s) 1068
Eco24I GRGCYC 1 cut(s) 651
Eco47I GGWCC 1 cut(s) 1014
Eco53kI GAGCTC 1 cut(s) 649
Eco91I GGTNACC 1 cut(s) 455
EcoICRI GAGCTC 1 cut(s) 649
EcoO109I RGGNCCY 1 cut(s) 1014
EcoO65I GGTNACC 1 cut(s) 455
EcoT38I GRGCYC 1 cut(s) 651
FaeI CATG 8 cut(s) 190, 346, 357, 452, 583, 796, 897, 941
FaqI GGGAC 3 cut(s) 69, 716, 1027
FatI CATG 8 cut(s) 186, 342, 353, 448, 579, 792, 893, 937
FbaI TGATCA 1 cut(s) 75
Fnu4HI GCNGC 1 cut(s) 678
FokI GGATG 3 cut(s) 503, 856, 1058
FriOI GRGCYC 1 cut(s) 651
Fsp4HI GCNGC 1 cut(s) 678
FspBI CTAG 4 cut(s) 269, 497, 551, 1059
GluI GCNGC 1 cut(s) 678
GsaI CCCAGC 2 cut(s) 593, 1014
GsuI CTGGAG 1 cut(s) 693
HaeIII GGCC 4 cut(s) 260, 407, 420, 857
HapII CCGG 2 cut(s) 396, 507
HgaI GACGC 1 cut(s) 953
Hin1II CATG 8 cut(s) 190, 346, 357, 452, 583, 796, 897, 941
HinfI GANTC 1 cut(s) 120
HpaII CCGG 2 cut(s) 396, 507
HphI GGTGA 4 cut(s) 37, 286, 467, 911
Hpy188I TCNGA 6 cut(s) 75, 103, 150, 442, 790, 831
Hpy188III TCNNGA 3 cut(s) 187, 465, 672
Hpy99I CGWCG 1 cut(s) 872
HpyAV CCTTC 2 cut(s) 271, 826
HpyCH4III ACNGT 3 cut(s) 60, 141, 519
HpyCH4IV ACGT 5 cut(s) 35, 534, 640, 961, 1067
HpyCH4V TGCA 4 cut(s) 128, 452, 494, 680
HpyF10VI GCNNNNNNNGC 1 cut(s) 413
HpyF3I CTNAG 4 cut(s) 102, 111, 163, 439
HpySE526I ACGT 5 cut(s) 35, 534, 640, 961, 1067
Hsp92II CATG 8 cut(s) 190, 346, 357, 452, 583, 796, 897, 941
Ksp22I TGATCA 1 cut(s) 75
Kzo9I GATC 5 cut(s) 75, 461, 618, 755, 864
LmnI GCTCC 3 cut(s) 471, 674, 1057
Lsp1109I GCAGC 1 cut(s) 664
LweI GCATC 1 cut(s) 481
MaeI CTAG 4 cut(s) 269, 497, 551, 1059
MaeII ACGT 5 cut(s) 35, 534, 640, 961, 1067
MaeIII GTNAC 5 cut(s) 455, 526, 899, 931, 985
MalI GATC 5 cut(s) 77, 463, 620, 757, 866
MboI GATC 5 cut(s) 75, 461, 618, 755, 864
MboII GAAGA 5 cut(s) 40, 43, 87, 568, 953
MflI RGATCY 1 cut(s) 755
MhlI GDGCHC 1 cut(s) 651
MluCI AATT 4 cut(s) 7, 262, 501, 807
MmeI TCCRAC 2 cut(s) 305, 673
MseI TTAA 6 cut(s) 210, 483, 744, 750, 767, 806
MslI CAYNNNNRTG 1 cut(s) 453
MspCI CTTAAG 2 cut(s) 209, 743
MspI CCGG 2 cut(s) 396, 507
Mva1269I GAATGC 1 cut(s) 565
MwoI GCNNNNNNNGC 1 cut(s) 413
NdeII GATC 5 cut(s) 75, 461, 618, 755, 864
NlaIII CATG 8 cut(s) 190, 346, 357, 452, 583, 796, 897, 941
NlaIV GGNNCC 2 cut(s) 604, 1015
NmuCI GTSAC 3 cut(s) 455, 526, 899
NspI RCATGY 1 cut(s) 796
PagI TCATGA 1 cut(s) 186
PaqCI CACCTGC 1 cut(s) 443
PciI ACATGT 1 cut(s) 792
PctI GAATGC 1 cut(s) 565
PfeI GAWTC 1 cut(s) 120
PflMI CCANNNNNTGG 1 cut(s) 663
PinAI ACCGGT 1 cut(s) 395
PkrI GCNGC 1 cut(s) 679
Ple19I CGATCG 1 cut(s) 867
Ppu21I YACGTR 1 cut(s) 1068
PpuMI RGGWCCY 1 cut(s) 1014
PscI ACATGT 1 cut(s) 792
PshBI ATTAAT 1 cut(s) 750
Psp124BI GAGCTC 1 cut(s) 651
Psp1406I AACGTT 1 cut(s) 961
Psp5II RGGWCCY 1 cut(s) 1014
PspEI GGTNACC 1 cut(s) 455
PspFI CCCAGC 2 cut(s) 589, 1010
PspN4I GGNNCC 2 cut(s) 604, 1015
PspPI GGNCC 1 cut(s) 1014
PspPPI RGGWCCY 1 cut(s) 1014
PsuI RGATCY 1 cut(s) 755
PvuI CGATCG 1 cut(s) 867
RsaI GTAC 2 cut(s) 848, 1070
RsaNI GTAC 2 cut(s) 847, 1069
RseI CAYNNNNRTG 1 cut(s) 453
SacI GAGCTC 1 cut(s) 651
SaqAI TTAA 6 cut(s) 210, 483, 744, 750, 767, 806
SatI GCNGC 1 cut(s) 678
Sau3AI GATC 5 cut(s) 75, 461, 618, 755, 864
Sau96I GGNCC 1 cut(s) 1014
SduI GDGCHC 1 cut(s) 651
SfaNI GCATC 1 cut(s) 481
SinI GGWCC 1 cut(s) 1014
SmiMI CAYNNNNRTG 1 cut(s) 453
SmlI CTYRAG 2 cut(s) 209, 743
SmoI CTYRAG 2 cut(s) 209, 743
SnaBI TACGTA 1 cut(s) 1068
SpeI ACTAGT 1 cut(s) 496
Sse9I AATT 4 cut(s) 7, 262, 501, 807
SspMI CTAG 4 cut(s) 269, 497, 551, 1059
SstI GAGCTC 1 cut(s) 651
TaaI ACNGT 3 cut(s) 60, 141, 519
TaiI ACGT 5 cut(s) 38, 537, 643, 964, 1070
TaqII GACCGA 2 cut(s) 328, 474
TasI AATT 4 cut(s) 7, 262, 501, 807
TatI WGTACW 1 cut(s) 846
TfiI GAWTC 1 cut(s) 120
Tru1I TTAA 6 cut(s) 210, 483, 744, 750, 767, 806
Tru9I TTAA 6 cut(s) 210, 483, 744, 750, 767, 806
TscAI CASTG 4 cut(s) 91, 522, 544, 619
TseFI GTSAC 3 cut(s) 455, 526, 899
TseI GCWGC 1 cut(s) 677
Tsp45I GTSAC 3 cut(s) 455, 526, 899
TspDTI ATGAA 5 cut(s) 437, 690, 882, 954, 1062
TspRI CASTG 4 cut(s) 91, 522, 544, 619
Van91I CCANNNNNTGG 1 cut(s) 663
Vha464I CTTAAG 2 cut(s) 209, 743
VpaK11BI GGWCC 1 cut(s) 1014
VspI ATTAAT 1 cut(s) 750
XapI RAATTY 1 cut(s) 7
XceI RCATGY 1 cut(s) 796
XcmI CCANNNNNNNNNTGG 1 cut(s) 268
XspI CTAG 4 cut(s) 269, 497, 551, 1059
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.