Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0002599

Physical Location & Seq

Genomic Coordinates Reverse (-)

17041626 .. 17045686

Gene Structure 4061 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG181100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGAGCTTCTTGACATCATCCGCCTGGTGGAGAAGCCATGTCAACTTGCGAACGCTGTACATGTTGTTCCTGGGTCAGCTCCTCTCCTTCTTTCTCGCACTCATGAGCTTCACTTCATCTCTCATAGCCAATCTCGGTGTGGATACGCCGATTACACAGACCTTGTTCACTTACTTGCTTTTGGCTTTGGTTTATGGAGGAATCTTGCTGCATAGGCGTGAGAAATTACGGGTTTCTTGGTATTGGTATCTTCTCTTGGGGTTTGTGGATGTTCAAGGGAACTATCTTGTAAATGAAGCATATCAGTTCTCATCAATAACTAGTGTGACATTATTGGACTGTTTTACAATCGCTTGGGTGCTAATTCTCACATGGATCTTCCTCGGCACTCGATATTCCATATGGCAATTGTTTGGTGCAGCCCTCTGTGTGGTTGGGCTTGGCATAGTGCTCCTCTCTGATGCAGGGGTAGCTGGTGGAGGTGGTTCACAACCTCTTCTTGGAGATGTCCTGGTCATAGCAGGAACAATTTTCTTTGCACTGAGCAATGTTGGTGAGGTTGGTGAACTCTTTCAGACTGTCTTCTATTTTCTCTTACTTTATCCTATAAAAGGCAGGTGGGCACCAGTTAAGTCAAGGAAGCAATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SLC35F

Protein Analysis

216

Amino Acids

24.16

Weight (kDa)

8.93

Isoelectric Point (pI)

26.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SLC35F	PF06027	16 - 186	2e-50	Solute carrier family 35
EamA	PF00892	23 - 151	3.4e-10	EamA-like transporter family
UAA	PF08449	71 - 155	8.4e-07	UAA transporter family
CRT-like	PF08627	72 - 184	2.6e-08	CRT-like, chloroquine-resistance transporter-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002599)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59310 AT3G59310 AT3G59310 AT3G59320 AT3G59320 AT3G59340 AT3G59340 AT3G59340 AT3G59340
fragaria_vesca	FvH4_4g11520 FvH4_6g18390
malus_domestica	MD04G1036800.v1.1 MD14G1020100.v1.1
prunus_persica	Prupe.1G186000_v2.0.a1 Prupe.7G113500_v2.0.a1
pyrus_communis	pycom04g02990 pycom14g01970
rosa_chinensis	RchiOBHm_Chr3g0472881 RchiOBHm_Chr4g0408431
rosa_laevigata	RLG00000008651 RLG00000024049
rosa_multiflora	Rmu_co8481489.1_g000001 Rmu_sc0000787.1_g000011
rosa_roxburghii	Rroxscaffold_5G00352900 Rroxscaffold_6G00408510
rosa_rugosa	Rorug03G0128900 Rorug03G0129000 Rorug03G0129100 Rorug04G0085800 Rorug04G0085900
rosa_samantha	Rh3AG181100 Rh3BG207300 Rh3CG204500 Rh3DG168500 Rh4AG150500 Rh4BG147800 Rh4CG157800 Rh4DG143400
rosa_wichuraiana	Rw3G016200 Rw4G012290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	606
Acc36I	ACCTGC	1 cut(s)	606
AccB1I	GGYRCC	1 cut(s)	622
AciI	CCGC	1 cut(s)	21
AclWI	GGATC	1 cut(s)	383
AfaI	GTAC	1 cut(s)	59
AfiI	CCNNNNNNNGG	4 cut(s)	27, 430, 500, 611
AflIII	ACRYGT	1 cut(s)	60
AgsI	TTSAA	1 cut(s)	275
AhlI	ACTAGT	1 cut(s)	320
AjnI	CCWGG	3 cut(s)	23, 69, 510
AluBI	AGCT	4 cut(s)	6, 79, 108, 473
AluI	AGCT	4 cut(s)	6, 79, 108, 473
Alw21I	GWGCWC	1 cut(s)	453
AlwI	GGATC	1 cut(s)	383
ApeKI	GCWGC	2 cut(s)	208, 419
Asp700I	GAANNNNTTC	1 cut(s)	570
AsuHPI	GGTGA	2 cut(s)	566, 575
BaeGI	GKGCMC	1 cut(s)	625
BanI	GGYRCC	1 cut(s)	622
BbsI	GAAGAC	1 cut(s)	574
Bbv12I	GWGCWC	1 cut(s)	453
BbvI	GCAGC	2 cut(s)	195, 431
BciT130I	CCWGG	3 cut(s)	25, 71, 512
BciVI	GTATCC	1 cut(s)	136
BcuI	ACTAGT	1 cut(s)	320
BfaI	CTAG	1 cut(s)	321
BfuAI	ACCTGC	1 cut(s)	606
BfuI	GTATCC	1 cut(s)	136
BisI	GCNGC	2 cut(s)	209, 420
BlsI	GCNGC	2 cut(s)	210, 421
Bme1390I	CCNGG	3 cut(s)	25, 71, 512
BmiI	GGNNCC	1 cut(s)	624
BmrFI	CCNGG	3 cut(s)	25, 71, 512
BmsI	GCATC	1 cut(s)	451
BpiI	GAAGAC	1 cut(s)	574
BsaJI	CCNNGG	2 cut(s)	70, 382
Bsc4I	CCNNNNNNNGG	4 cut(s)	27, 430, 500, 611
Bse1I	ACTGG	1 cut(s)	626
Bse3DI	GCAATG	1 cut(s)	553
BseBI	CCWGG	3 cut(s)	25, 71, 512
BseDI	CCNNGG	2 cut(s)	70, 382
BseGI	GGATG	2 cut(s)	17, 274
BseLI	CCNNNNNNNGG	4 cut(s)	27, 430, 500, 611
BseMI	GCAATG	1 cut(s)	553
BseMII	CTCAG	1 cut(s)	533
BseNI	ACTGG	1 cut(s)	626
BseRI	GAGGAG	2 cut(s)	71, 443
BseSI	GKGCMC	1 cut(s)	625
BseXI	GCAGC	2 cut(s)	195, 431
BsgI	GTGCAG	1 cut(s)	438
BshNI	GGYRCC	1 cut(s)	622
BsiHKAI	GWGCWC	1 cut(s)	453
BslI	CCNNNNNNNGG	4 cut(s)	27, 430, 500, 611
Bsp1286I	GDGCHC	2 cut(s)	453, 625
Bsp1407I	TGTACA	1 cut(s)	57
Bsp143I	GATC	1 cut(s)	375
BspACI	CCGC	1 cut(s)	21
BspCNI	CTCAG	1 cut(s)	534
BspHI	TCATGA	1 cut(s)	102
BspLI	GGNNCC	1 cut(s)	624
BspMI	ACCTGC	1 cut(s)	606
BspPI	GGATC	1 cut(s)	383
BspT107I	GGYRCC	1 cut(s)	622
BsrDI	GCAATG	1 cut(s)	553
BsrGI	TGTACA	1 cut(s)	57
BsrI	ACTGG	1 cut(s)	626
BssECI	CCNNGG	2 cut(s)	70, 382
BssMI	GATC	1 cut(s)	375
Bst2UI	CCWGG	3 cut(s)	25, 71, 512
Bst4CI	ACNGT	2 cut(s)	341, 580
Bst6I	CTCTTC	1 cut(s)	501
BstAUI	TGTACA	1 cut(s)	57
BstDEI	CTNAG	1 cut(s)	542
BstENI	CCTNNNNNAGG	1 cut(s)	609
BstF5I	GGATG	2 cut(s)	17, 274
BstKTI	GATC	1 cut(s)	378
BstMBI	GATC	1 cut(s)	375
BstMWI	GCNNNNNNNGC	2 cut(s)	214, 470
BstNI	CCWGG	3 cut(s)	25, 71, 512
BstNSI	RCATGY	1 cut(s)	64
BstSCI	CCNGG	3 cut(s)	23, 69, 510
BstSLI	GKGCMC	1 cut(s)	625
BstV1I	GCAGC	2 cut(s)	195, 431
BstV2I	GAAGAC	1 cut(s)	574
BstX2I	RGATCY	1 cut(s)	375
BstYI	RGATCY	1 cut(s)	375
BsuI	GTATCC	1 cut(s)	136
BtsCI	GGATG	2 cut(s)	17, 274
BtsIMutI	CAGTG	1 cut(s)	539
BveI	ACCTGC	1 cut(s)	606
CciI	TCATGA	1 cut(s)	102
Csp6I	GTAC	1 cut(s)	58
CviAII	CATG	4 cut(s)	38, 61, 103, 372
CviJI	RGCY	9 cut(s)	6, 36, 79, 108, 128, 185, 422, 439, 473
CviKI_1	RGCY	9 cut(s)	6, 36, 79, 108, 128, 185, 422, 439, 473
CviQI	GTAC	1 cut(s)	58
DdeI	CTNAG	1 cut(s)	542
DpnI	GATC	1 cut(s)	377
DpnII	GATC	1 cut(s)	375
Eam1104I	CTCTTC	1 cut(s)	501
EarI	CTCTTC	1 cut(s)	501
EciI	GGCGGA	1 cut(s)	10
EcoNI	CCTNNNNNAGG	1 cut(s)	609
EcoRII	CCWGG	3 cut(s)	23, 69, 510
FaeI	CATG	4 cut(s)	41, 64, 106, 375
FatI	CATG	4 cut(s)	37, 60, 102, 371
FauNDI	CATATG	1 cut(s)	401
Fnu4HI	GCNGC	2 cut(s)	209, 420
FokI	GGATG	2 cut(s)	4, 281
Fsp4HI	GCNGC	2 cut(s)	209, 420
FspBI	CTAG	1 cut(s)	321
GluI	GCNGC	2 cut(s)	209, 420
Hin1II	CATG	4 cut(s)	41, 64, 106, 375
HincII	GTYRAC	1 cut(s)	43
HindII	GTYRAC	1 cut(s)	43
HinfI	GANTC	1 cut(s)	201
HphI	GGTGA	2 cut(s)	566, 575
Hpy166II	GTNNAC	4 cut(s)	43, 168, 488, 566
Hpy188I	TCNGA	2 cut(s)	460, 576
Hpy188III	TCNNGA	2 cut(s)	10, 103
Hpy8I	GTNNAC	4 cut(s)	43, 168, 488, 566
HpyAV	CCTTC	1 cut(s)	97
HpyCH4III	ACNGT	2 cut(s)	341, 580
HpyCH4V	TGCA	4 cut(s)	211, 419, 464, 539
HpyF10VI	GCNNNNNNNGC	2 cut(s)	214, 470
HpyF3I	CTNAG	1 cut(s)	542
Hsp92II	CATG	4 cut(s)	41, 64, 106, 375
Kzo9I	GATC	1 cut(s)	375
LmnI	GCTCC	2 cut(s)	84, 456
Lsp1109I	GCAGC	2 cut(s)	195, 431
LweI	GCATC	1 cut(s)	451
MaeI	CTAG	1 cut(s)	321
MaeIII	GTNAC	1 cut(s)	325
MalI	GATC	1 cut(s)	377
MboI	GATC	1 cut(s)	375
MboII	GAAGA	4 cut(s)	242, 370, 488, 574
MfeI	CAATTG	1 cut(s)	407
MflI	RGATCY	1 cut(s)	375
MhlI	GDGCHC	2 cut(s)	453, 625
MluCI	AATT	5 cut(s)	224, 363, 407, 528, 644
MnlI	CCTC	8 cut(s)	92, 191, 392, 434, 464, 473, 504, 550
MroXI	GAANNNNTTC	1 cut(s)	570
MseI	TTAA	1 cut(s)	630
MslI	CAYNNNNRTG	1 cut(s)	216
MspR9I	CCNGG	3 cut(s)	25, 71, 512
MunI	CAATTG	1 cut(s)	407
MvaI	CCWGG	3 cut(s)	25, 71, 512
MwoI	GCNNNNNNNGC	2 cut(s)	214, 470
NdeI	CATATG	1 cut(s)	401
NdeII	GATC	1 cut(s)	375
NlaIII	CATG	4 cut(s)	41, 64, 106, 375
NlaIV	GGNNCC	1 cut(s)	624
NmeAIII	GCCGAG	1 cut(s)	363
NmuCI	GTSAC	1 cut(s)	325
NspI	RCATGY	1 cut(s)	64
PagI	TCATGA	1 cut(s)	102
PaqCI	CACCTGC	1 cut(s)	606
PciI	ACATGT	1 cut(s)	60
PdmI	GAANNNNTTC	1 cut(s)	570
PfeI	GAWTC	1 cut(s)	201
PkrI	GCNGC	2 cut(s)	210, 421
PscI	ACATGT	1 cut(s)	60
Psp6I	CCWGG	3 cut(s)	23, 69, 510
PspGI	CCWGG	3 cut(s)	23, 69, 510
PspN4I	GGNNCC	1 cut(s)	624
PsrI	GAACNNNNNNTAC	2 cut(s)	50, 82
PsuI	RGATCY	1 cut(s)	375
RsaI	GTAC	1 cut(s)	59
RsaNI	GTAC	1 cut(s)	58
RseI	CAYNNNNRTG	1 cut(s)	216
SaqAI	TTAA	1 cut(s)	630
SatI	GCNGC	2 cut(s)	209, 420
Sau3AI	GATC	1 cut(s)	375
ScrFI	CCNGG	3 cut(s)	25, 71, 512
SduI	GDGCHC	2 cut(s)	453, 625
SetI	ASST	9 cut(s)	8, 81, 110, 164, 475, 484, 496, 561, 620
SfaNI	GCATC	1 cut(s)	451
SmiMI	CAYNNNNRTG	1 cut(s)	216
SpeI	ACTAGT	1 cut(s)	320
Sse9I	AATT	5 cut(s)	224, 363, 407, 528, 644
SsiI	CCGC	1 cut(s)	21
SspMI	CTAG	1 cut(s)	321
StyD4I	CCNGG	3 cut(s)	23, 69, 510
TaaI	ACNGT	2 cut(s)	341, 580
TaqI	TCGA	1 cut(s)	391
TasI	AATT	5 cut(s)	224, 363, 407, 528, 644
TatI	WGTACW	1 cut(s)	57
TfiI	GAWTC	1 cut(s)	201
Tru1I	TTAA	1 cut(s)	630
Tru9I	TTAA	1 cut(s)	630
TscAI	CASTG	1 cut(s)	546
TseFI	GTSAC	1 cut(s)	325
TseI	GCWGC	2 cut(s)	208, 419
Tsp45I	GTSAC	1 cut(s)	325
TspDTI	ATGAA	2 cut(s)	105, 309
TspRI	CASTG	1 cut(s)	546
XagI	CCTNNNNNAGG	1 cut(s)	609
XceI	RCATGY	1 cut(s)	64
XcmI	CCANNNNNNNNNTGG	1 cut(s)	136
XmnI	GAANNNNTTC	1 cut(s)	570
XspI	CTAG	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.