Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0002599

Physical Location & Seq

Genomic Coordinates Forward (+)

34678206 .. 34684677

Gene Structure 6472 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG157800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGTGTTGTGCAGTGGTGAAGGCTTATCAATACACATCTATAACGAGTGTAATGTTGCTGGATTGTTGGACTATCCCATCGGTCATGCTTCTTACTTGGGTCTTCCTCAAAACAAAATACAGATTTAAAAAGATAACTGGTGTGGTGGCCTGTGTTGCTGGCCTTGTCATGGTTGTTTTCTCAGATGTTCATGCAGGCGATCGAGCAGGAGGGAGCAATCCCCGTAAAGGTGATATACTAGTAATTGCCGGTTCTACCCTGTATGCTGTCACTAATGTCAGTGAGGAGTTTCTAGTGAAGAATGCTGACAGAGTTGAACTCATGTCCTTGCTGGGCTTTTTTGGTGCCATTATCAGTGCTATCCAAATAAGCATTTTAGAACGTAACGAGCTCAAATCCATCAAGTGGTCATCTGGAGCAGTATTTCCTTTTGTTGGATTTTCATTGGCTATGTTCCTCTTTTACTCATTAGTCCCAATCTTACTTAAGATTAATGGGTCTACGATGTTAAACCTGTCATTGCTGACCTCAGACATGTGGGCCGTCTTAATTCGCATTTTTGCTTACCATGAGAAGGTTGATTGGATGTACTTTGTGGCCTTTGCAATCGTTGTTGTTGGGCTTGTTATTTATTCATGGGGTGACAAGGAAGAGGATCAACGCTGGGCTGATGTTGCGGATGAAGATGCAGAGAGAAGCAAACGTTTTGACGAGGAAGTTGCTTCAGTAAGTCGCGACCGAGGAACAATGGCTGGGACCTCAAAAACAGGGGATAACAGCAAGGATGAAGCTCCTACATGCTCTACAGAAAGAGAAATTGTTGACAACAAGAGCATAGGAAGAGATGGACAAGGGAAGAAATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SLC35F

Protein Analysis

288

Amino Acids

31.89

Weight (kDa)

5.83

Isoelectric Point (pI)

22.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SLC35F	PF06027	5 - 212	1.7e-98	Solute carrier family 35
EamA	PF00892	76 - 212	9.6e-07	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002599)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59310 AT3G59310 AT3G59310 AT3G59320 AT3G59320 AT3G59340 AT3G59340 AT3G59340 AT3G59340
fragaria_vesca	FvH4_4g11520 FvH4_6g18390
malus_domestica	MD04G1036800.v1.1 MD14G1020100.v1.1
prunus_persica	Prupe.1G186000_v2.0.a1 Prupe.7G113500_v2.0.a1
pyrus_communis	pycom04g02990 pycom14g01970
rosa_chinensis	RchiOBHm_Chr3g0472881 RchiOBHm_Chr4g0408431
rosa_laevigata	RLG00000008651 RLG00000024049
rosa_multiflora	Rmu_co8481489.1_g000001 Rmu_sc0000787.1_g000011
rosa_roxburghii	Rroxscaffold_5G00352900 Rroxscaffold_6G00408510
rosa_rugosa	Rorug03G0128900 Rorug03G0129000 Rorug03G0129100 Rorug04G0085800 Rorug04G0085900
rosa_samantha	Rh3AG181100 Rh3BG207300 Rh3CG204500 Rh3DG168500 Rh4AG150500 Rh4BG147800 Rh4CG157800 Rh4DG143400
rosa_wichuraiana	Rw3G016200 Rw4G012290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	344
AccB7I	CCANNNNNTGG	1 cut(s)	405
AccI	GTMKAC	1 cut(s)	500
AccII	CGCG	1 cut(s)	735
AciI	CCGC	1 cut(s)	677
AclI	AACGTT	1 cut(s)	703
AclWI	GGATC	1 cut(s)	663
AcuI	CTGAAG	1 cut(s)	708
AfaI	GTAC	1 cut(s)	590
AfiI	CCNNNNNNNGG	5 cut(s)	169, 227, 405, 434, 574
AflII	CTTAAG	1 cut(s)	485
AflIII	ACRYGT	1 cut(s)	534
AgsI	TTSAA	1 cut(s)	317
AhlI	ACTAGT	1 cut(s)	238
AluBI	AGCT	2 cut(s)	391, 791
AluI	AGCT	2 cut(s)	391, 791
Alw21I	GWGCWC	1 cut(s)	393
AlwI	GGATC	1 cut(s)	663
AoxI	GGCC	4 cut(s)	147, 160, 540, 597
AseI	ATTAAT	1 cut(s)	492
AspS9I	GGNCC	2 cut(s)	540, 756
AsuHPI	GGTGA	3 cut(s)	28, 242, 653
AvaII	GGWCC	1 cut(s)	756
BanI	GGYRCC	1 cut(s)	344
BanII	GRGCYC	1 cut(s)	393
BbsI	GAAGAC	1 cut(s)	94
Bbv12I	GWGCWC	1 cut(s)	393
BccI	CCATC	3 cut(s)	85, 407, 839
BceAI	ACGGC	1 cut(s)	527
BcgI	CGANNNNNNTGC	2 cut(s)	701, 735
BcuI	ACTAGT	1 cut(s)	238
BfaI	CTAG	2 cut(s)	239, 293
BfmI	CTRYAG	1 cut(s)	804
BfrI	CTTAAG	1 cut(s)	485
Bme18I	GGWCC	1 cut(s)	756
BmgT120I	GGNCC	2 cut(s)	540, 756
BmiI	GGNNCC	2 cut(s)	346, 757
BmsI	GCATC	1 cut(s)	676
BpiI	GAAGAC	1 cut(s)	94
BplI	GAGNNNNNCTC	2 cut(s)	303, 335
BpmI	CTGGAG	1 cut(s)	435
BsaJI	CCNNGG	1 cut(s)	739
Bsc4I	CCNNNNNNNGG	5 cut(s)	169, 227, 405, 434, 574
Bse118I	RCCGGY	1 cut(s)	248
Bse1I	ACTGG	1 cut(s)	142
Bse3DI	GCAATG	1 cut(s)	518
BseDI	CCNNGG	1 cut(s)	739
BseGI	GGATG	3 cut(s)	591, 685, 790
BseLI	CCNNNNNNNGG	5 cut(s)	169, 227, 405, 434, 574
BseMI	GCAATG	1 cut(s)	518
BseMII	CTCAG	2 cut(s)	195, 543
BseNI	ACTGG	1 cut(s)	142
BseRI	GAGGAG	1 cut(s)	299
BseYI	CCCAGC	3 cut(s)	331, 663, 752
BsgI	GTGCAG	1 cut(s)	30
Bsh1236I	CGCG	1 cut(s)	735
Bsh1285I	CGRYCG	2 cut(s)	202, 739
BshFI	GGCC	4 cut(s)	149, 162, 542, 599
BshNI	GGYRCC	1 cut(s)	344
BsiEI	CGRYCG	2 cut(s)	202, 739
BsiHKAI	GWGCWC	1 cut(s)	393
BsiSI	CCGG	1 cut(s)	249
BslFI	GGGAC	2 cut(s)	458, 769
BslI	CCNNNNNNNGG	5 cut(s)	169, 227, 405, 434, 574
BsmFI	GGGAC	2 cut(s)	458, 769
BsmI	GAATGC	1 cut(s)	307
BsnI	GGCC	4 cut(s)	149, 162, 542, 599
Bsp1286I	GDGCHC	1 cut(s)	393
Bsp143I	GATC	2 cut(s)	199, 655
Bsp68I	TCGCGA	1 cut(s)	735
BspACI	CCGC	1 cut(s)	677
BspANI	GGCC	4 cut(s)	149, 162, 542, 599
BspCNI	CTCAG	2 cut(s)	194, 542
BspFNI	CGCG	1 cut(s)	735
BspHI	TCATGA	1 cut(s)	863
BspLI	GGNNCC	2 cut(s)	346, 757
BspPI	GGATC	1 cut(s)	663
BspT107I	GGYRCC	1 cut(s)	344
BspTI	CTTAAG	1 cut(s)	485
BsrDI	GCAATG	1 cut(s)	518
BsrFI	RCCGGY	1 cut(s)	248
BsrI	ACTGG	1 cut(s)	142
BssAI	RCCGGY	1 cut(s)	248
BssECI	CCNNGG	1 cut(s)	739
BssMI	GATC	2 cut(s)	199, 655
Bst6I	CTCTTC	2 cut(s)	645, 835
BstAFI	CTTAAG	1 cut(s)	485
BstC8I	GCNNGC	2 cut(s)	160, 196
BstDEI	CTNAG	2 cut(s)	181, 529
BstF5I	GGATG	3 cut(s)	591, 685, 790
BstFNI	CGCG	1 cut(s)	735
BstKTI	GATC	2 cut(s)	202, 658
BstMBI	GATC	2 cut(s)	199, 655
BstMCI	CGRYCG	2 cut(s)	202, 739
BstMWI	GCNNNNNNNGC	2 cut(s)	155, 674
BstNSI	RCATGY	2 cut(s)	538, 801
BstSFI	CTRYAG	1 cut(s)	804
BstUI	CGCG	1 cut(s)	735
BstV2I	GAAGAC	1 cut(s)	94
BsuRI	GGCC	4 cut(s)	149, 162, 542, 599
BtsCI	GGATG	3 cut(s)	591, 685, 790
BtsI	GCAGTG	1 cut(s)	18
BtsIMutI	CAGTG	3 cut(s)	18, 286, 361
BtuMI	TCGCGA	1 cut(s)	735
Cac8I	GCNNGC	2 cut(s)	160, 196
CciI	TCATGA	1 cut(s)	863
Cfr10I	RCCGGY	1 cut(s)	248
Cfr13I	GGNCC	2 cut(s)	540, 756
Csp6I	GTAC	1 cut(s)	589
CviAII	CATG	9 cut(s)	85, 169, 191, 322, 535, 569, 636, 798, 864
CviQI	GTAC	1 cut(s)	589
DdeI	CTNAG	2 cut(s)	181, 529
DpnI	GATC	2 cut(s)	201, 657
DpnII	GATC	2 cut(s)	199, 655
DraI	TTTAAA	1 cut(s)	127
Eam1104I	CTCTTC	2 cut(s)	645, 835
EarI	CTCTTC	2 cut(s)	645, 835
Ecl136II	GAGCTC	1 cut(s)	391
Eco24I	GRGCYC	1 cut(s)	393
Eco47I	GGWCC	1 cut(s)	756
Eco53kI	GAGCTC	1 cut(s)	391
Eco57I	CTGAAG	1 cut(s)	708
EcoICRI	GAGCTC	1 cut(s)	391
EcoO109I	RGGNCCY	1 cut(s)	756
EcoT38I	GRGCYC	1 cut(s)	393
FaeI	CATG	9 cut(s)	88, 172, 194, 325, 538, 572, 639, 801, 867
FaqI	GGGAC	2 cut(s)	458, 769
FatI	CATG	9 cut(s)	84, 168, 190, 321, 534, 568, 635, 797, 863
FblI	GTMKAC	1 cut(s)	500
FokI	GGATG	3 cut(s)	598, 692, 797
FriOI	GRGCYC	1 cut(s)	393
FspBI	CTAG	2 cut(s)	239, 293
GsaI	CCCAGC	3 cut(s)	335, 667, 756
GsuI	CTGGAG	1 cut(s)	435
HaeIII	GGCC	4 cut(s)	149, 162, 542, 599
HapII	CCGG	1 cut(s)	249
Hin1II	CATG	9 cut(s)	88, 172, 194, 325, 538, 572, 639, 801, 867
HincII	GTYRAC	1 cut(s)	823
HindII	GTYRAC	1 cut(s)	823
HpaII	CCGG	1 cut(s)	249
HphI	GGTGA	3 cut(s)	28, 242, 653
Hpy166II	GTNNAC	2 cut(s)	501, 823
Hpy188I	TCNGA	2 cut(s)	184, 532
Hpy188III	TCNNGA	3 cut(s)	414, 734, 864
Hpy8I	GTNNAC	2 cut(s)	501, 823
HpyAV	CCTTC	2 cut(s)	13, 568
HpyCH4IV	ACGT	2 cut(s)	382, 703
HpyCH4V	TGCA	4 cut(s)	11, 194, 605, 689
HpyF10VI	GCNNNNNNNGC	2 cut(s)	155, 674
HpyF3I	CTNAG	2 cut(s)	181, 529
HpySE526I	ACGT	2 cut(s)	382, 703
Hsp92II	CATG	9 cut(s)	88, 172, 194, 325, 538, 572, 639, 801, 867
Kzo9I	GATC	2 cut(s)	199, 655
LmnI	GCTCC	3 cut(s)	213, 416, 796
LweI	GCATC	1 cut(s)	676
MaeI	CTAG	2 cut(s)	239, 293
MaeII	ACGT	2 cut(s)	382, 703
MaeIII	GTNAC	3 cut(s)	268, 383, 641
MalI	GATC	2 cut(s)	201, 657
MboI	GATC	2 cut(s)	199, 655
MboII	GAAGA	5 cut(s)	94, 310, 662, 695, 852
MhlI	GDGCHC	1 cut(s)	393
MluCI	AATT	3 cut(s)	243, 549, 816
MmeI	TCCRAC	2 cut(s)	47, 415
MnlI	CCTC	9 cut(s)	116, 203, 277, 467, 538, 646, 706, 734, 769
MseI	TTAA	5 cut(s)	126, 486, 492, 509, 548
MspCI	CTTAAG	1 cut(s)	485
MspI	CCGG	1 cut(s)	249
Mva1269I	GAATGC	1 cut(s)	307
MvnI	CGCG	1 cut(s)	735
MwoI	GCNNNNNNNGC	2 cut(s)	155, 674
NdeII	GATC	2 cut(s)	199, 655
NlaIII	CATG	9 cut(s)	88, 172, 194, 325, 538, 572, 639, 801, 867
NlaIV	GGNNCC	2 cut(s)	346, 757
NmuCI	GTSAC	2 cut(s)	268, 641
NruI	TCGCGA	1 cut(s)	735
NspI	RCATGY	2 cut(s)	538, 801
PagI	TCATGA	1 cut(s)	863
PciI	ACATGT	1 cut(s)	534
PctI	GAATGC	1 cut(s)	307
PflMI	CCANNNNNTGG	1 cut(s)	405
Ple19I	CGATCG	1 cut(s)	202
PpuMI	RGGWCCY	1 cut(s)	756
PscI	ACATGT	1 cut(s)	534
PshBI	ATTAAT	1 cut(s)	492
Psp124BI	GAGCTC	1 cut(s)	393
Psp1406I	AACGTT	1 cut(s)	703
Psp5II	RGGWCCY	1 cut(s)	756
PspFI	CCCAGC	3 cut(s)	331, 663, 752
PspN4I	GGNNCC	2 cut(s)	346, 757
PspPI	GGNCC	2 cut(s)	540, 756
PspPPI	RGGWCCY	1 cut(s)	756
PvuI	CGATCG	1 cut(s)	202
RruI	TCGCGA	1 cut(s)	735
RsaI	GTAC	1 cut(s)	590
RsaNI	GTAC	1 cut(s)	589
SacI	GAGCTC	1 cut(s)	393
SaqAI	TTAA	5 cut(s)	126, 486, 492, 509, 548
Sau3AI	GATC	2 cut(s)	199, 655
Sau96I	GGNCC	2 cut(s)	540, 756
SduI	GDGCHC	1 cut(s)	393
SetI	ASST	9 cut(s)	232, 385, 393, 516, 530, 579, 706, 761, 793
SfaNI	GCATC	1 cut(s)	676
SfcI	CTRYAG	1 cut(s)	804
SinI	GGWCC	1 cut(s)	756
SmlI	CTYRAG	1 cut(s)	485
SmoI	CTYRAG	1 cut(s)	485
SpeI	ACTAGT	1 cut(s)	238
Sse9I	AATT	3 cut(s)	243, 549, 816
SsiI	CCGC	1 cut(s)	677
SspMI	CTAG	2 cut(s)	239, 293
SstI	GAGCTC	1 cut(s)	393
TaiI	ACGT	2 cut(s)	385, 706
TaqI	TCGA	1 cut(s)	202
TaqII	GACCGA	2 cut(s)	70, 753
TasI	AATT	3 cut(s)	243, 549, 816
TatI	WGTACW	1 cut(s)	588
Tru1I	TTAA	5 cut(s)	126, 486, 492, 509, 548
Tru9I	TTAA	5 cut(s)	126, 486, 492, 509, 548
TscAI	CASTG	3 cut(s)	18, 286, 361
TseFI	GTSAC	2 cut(s)	268, 641
Tsp45I	GTSAC	2 cut(s)	268, 641
TspDTI	ATGAA	5 cut(s)	179, 432, 624, 696, 801
TspRI	CASTG	3 cut(s)	18, 286, 361
Van91I	CCANNNNNTGG	1 cut(s)	405
Vha464I	CTTAAG	1 cut(s)	485
VpaK11BI	GGWCC	1 cut(s)	756
VspI	ATTAAT	1 cut(s)	492
XceI	RCATGY	2 cut(s)	538, 801
XmiI	GTMKAC	1 cut(s)	500
XspI	CTAG	2 cut(s)	239, 293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.