Rh3CG204500

Solute carrier family 35

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0002599
Physical Location & Seq
Reverse (-)
18565082 .. 18569310
4229 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG204500.1

Sequence Viewer

Length: 738 bp
ATGAGCTTCTTGACATCATCCGCCTGGTGGAGAAGCCATGTCAACTTGCGAACGCTGTACATGTTGTTCCTGGGTCAGCTCCTCTCCTTCTTTCTCGCACTCATGAGCTTCACTTCATCTCTCATAGCCAATCTCGGTGTGGATACGCCGATTACACAGACCTTGTTCACTTACTTGCTTTTGGCTTTGGTTTATGGAGGAATCTTGCTGCATAGGCGTGAGAAATTACGGGTTTCTTGGTATTGGTATCTTCTCTTGGGGTTTGTGGATGTTCAAGGGAACTATCTTGTAAATGAAGCATATCAGTTCTCATCAATAACTAGTGTGACATTATTGGACTGTTTTACAATCGCTTGGGTGCTAATTCTCACATGGATCTTCCTCGGCACTCGATATTCCATATGGCAATTGTTTGGTGCAGCCCTCTGTGTGGTTGGGCTTGGCATAGTGCTCCTCTCTGATGCAGGGGTAGCTGGTGGAGGTGGTTCACAACCTCTTCTTGGAGATGTCCTGGTCATAGCAGGAACAATTTTCTTTGCACTGAGCAATGTTGGTGAGGAGTTTTGTGTGAAGAAAAGAGATCGTATTGAAGTAGTATGCATGATTGGTGTATTTGGATTTCTAGTGAGTGTGTGTCAGATATCCATTCTGGAATTAAAGAGTTTGGAATCAGTGGAGTGGTCTACAGATCTTGTAAGTAATCTTATCTTTGTATTATATGTGTTTGATTTGACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SLC35F

Protein Analysis

245

Amino Acids

27.34

Weight (kDa)

5.08

Isoelectric Point (pI)

25.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SLC35F PF06027 16 - 242 3.8e-66 Solute carrier family 35
EamA PF00892 23 - 151 4.4e-10 EamA-like transporter family
CRT-like PF08627 71 - 219 5.7e-10 CRT-like, chloroquine-resistance transporter-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 683
AciI CCGC 1 cut(s) 21
AclWI GGATC 1 cut(s) 383
AfaI GTAC 1 cut(s) 59
AfiI CCNNNNNNNGG 3 cut(s) 27, 430, 500
AflIII ACRYGT 1 cut(s) 60
AgsI TTSAA 2 cut(s) 275, 590
AhlI ACTAGT 1 cut(s) 320
AjnI CCWGG 3 cut(s) 23, 69, 510
AluBI AGCT 4 cut(s) 6, 79, 108, 473
AluI AGCT 4 cut(s) 6, 79, 108, 473
Alw21I GWGCWC 1 cut(s) 453
AlwI GGATC 1 cut(s) 383
ApeKI GCWGC 2 cut(s) 208, 419
AsuHPI GGTGA 1 cut(s) 566
Bbv12I GWGCWC 1 cut(s) 453
BbvI GCAGC 2 cut(s) 195, 431
BciT130I CCWGG 3 cut(s) 25, 71, 512
BciVI GTATCC 1 cut(s) 136
BcuI ACTAGT 1 cut(s) 320
BfaI CTAG 2 cut(s) 321, 623
BfmI CTRYAG 1 cut(s) 684
BfuI GTATCC 1 cut(s) 136
BglII AGATCT 1 cut(s) 688
BisI GCNGC 2 cut(s) 209, 420
BlsI GCNGC 2 cut(s) 210, 421
Bme1390I CCNGG 3 cut(s) 25, 71, 512
BmrFI CCNGG 3 cut(s) 25, 71, 512
BmsI GCATC 1 cut(s) 451
BsaJI CCNNGG 2 cut(s) 70, 382
Bsc4I CCNNNNNNNGG 3 cut(s) 27, 430, 500
Bse3DI GCAATG 1 cut(s) 553
BseBI CCWGG 3 cut(s) 25, 71, 512
BseDI CCNNGG 2 cut(s) 70, 382
BseGI GGATG 2 cut(s) 17, 274
BseLI CCNNNNNNNGG 3 cut(s) 27, 430, 500
BseMI GCAATG 1 cut(s) 553
BseMII CTCAG 1 cut(s) 533
BseRI GAGGAG 3 cut(s) 71, 443, 572
BseXI GCAGC 2 cut(s) 195, 431
BsgI GTGCAG 1 cut(s) 438
BsiHKAI GWGCWC 1 cut(s) 453
BslI CCNNNNNNNGG 3 cut(s) 27, 430, 500
Bsp1286I GDGCHC 1 cut(s) 453
Bsp1407I TGTACA 1 cut(s) 57
Bsp143I GATC 3 cut(s) 375, 580, 688
BspACI CCGC 1 cut(s) 21
BspCNI CTCAG 1 cut(s) 534
BspHI TCATGA 1 cut(s) 102
BspPI GGATC 1 cut(s) 383
BsrDI GCAATG 1 cut(s) 553
BsrGI TGTACA 1 cut(s) 57
BssECI CCNNGG 2 cut(s) 70, 382
BssMI GATC 3 cut(s) 375, 580, 688
Bst2UI CCWGG 3 cut(s) 25, 71, 512
Bst4CI ACNGT 1 cut(s) 341
Bst6I CTCTTC 1 cut(s) 501
BstAUI TGTACA 1 cut(s) 57
BstDEI CTNAG 1 cut(s) 542
BstF5I GGATG 2 cut(s) 17, 274
BstKTI GATC 3 cut(s) 378, 583, 691
BstMBI GATC 3 cut(s) 375, 580, 688
BstMWI GCNNNNNNNGC 2 cut(s) 214, 470
BstNI CCWGG 3 cut(s) 25, 71, 512
BstNSI RCATGY 1 cut(s) 64
BstSCI CCNGG 3 cut(s) 23, 69, 510
BstSFI CTRYAG 1 cut(s) 684
BstV1I GCAGC 2 cut(s) 195, 431
BstX2I RGATCY 2 cut(s) 375, 688
BstYI RGATCY 2 cut(s) 375, 688
BsuI GTATCC 1 cut(s) 136
BtsCI GGATG 2 cut(s) 17, 274
BtsIMutI CAGTG 2 cut(s) 539, 678
CciI TCATGA 1 cut(s) 102
Csp6I GTAC 1 cut(s) 58
CviAII CATG 5 cut(s) 38, 61, 103, 372, 601
CviJI RGCY 9 cut(s) 6, 36, 79, 108, 128, 185, 422, 439, 473
CviKI_1 RGCY 9 cut(s) 6, 36, 79, 108, 128, 185, 422, 439, 473
CviQI GTAC 1 cut(s) 58
DdeI CTNAG 1 cut(s) 542
DpnI GATC 3 cut(s) 377, 582, 690
DpnII GATC 3 cut(s) 375, 580, 688
Eam1104I CTCTTC 1 cut(s) 501
EarI CTCTTC 1 cut(s) 501
EciI GGCGGA 1 cut(s) 10
Eco32I GATATC 1 cut(s) 642
EcoRII CCWGG 3 cut(s) 23, 69, 510
EcoRV GATATC 1 cut(s) 642
EcoT22I ATGCAT 1 cut(s) 602
FaeI CATG 5 cut(s) 41, 64, 106, 375, 604
FatI CATG 5 cut(s) 37, 60, 102, 371, 600
FauNDI CATATG 1 cut(s) 401
FblI GTMKAC 1 cut(s) 683
Fnu4HI GCNGC 2 cut(s) 209, 420
FokI GGATG 2 cut(s) 4, 281
Fsp4HI GCNGC 2 cut(s) 209, 420
FspBI CTAG 2 cut(s) 321, 623
GluI GCNGC 2 cut(s) 209, 420
Hin1II CATG 5 cut(s) 41, 64, 106, 375, 604
HincII GTYRAC 1 cut(s) 43
HindII GTYRAC 1 cut(s) 43
HinfI GANTC 2 cut(s) 201, 668
HphI GGTGA 1 cut(s) 566
Hpy166II GTNNAC 4 cut(s) 43, 168, 488, 684
Hpy188I TCNGA 2 cut(s) 460, 639
Hpy188III TCNNGA 3 cut(s) 10, 103, 650
Hpy8I GTNNAC 4 cut(s) 43, 168, 488, 684
HpyAV CCTTC 1 cut(s) 97
HpyCH4III ACNGT 1 cut(s) 341
HpyCH4V TGCA 5 cut(s) 211, 419, 464, 539, 600
HpyF10VI GCNNNNNNNGC 2 cut(s) 214, 470
HpyF3I CTNAG 1 cut(s) 542
Hsp92II CATG 5 cut(s) 41, 64, 106, 375, 604
Kzo9I GATC 3 cut(s) 375, 580, 688
LmnI GCTCC 2 cut(s) 84, 456
Lsp1109I GCAGC 2 cut(s) 195, 431
LweI GCATC 1 cut(s) 451
MaeI CTAG 2 cut(s) 321, 623
MaeIII GTNAC 1 cut(s) 325
MalI GATC 3 cut(s) 377, 582, 690
MboI GATC 3 cut(s) 375, 580, 688
MboII GAAGA 4 cut(s) 242, 370, 488, 583
MfeI CAATTG 1 cut(s) 407
MflI RGATCY 2 cut(s) 375, 688
MhlI GDGCHC 1 cut(s) 453
MluCI AATT 5 cut(s) 224, 363, 407, 528, 653
MnlI CCTC 8 cut(s) 92, 191, 392, 434, 464, 473, 504, 550
Mph1103I ATGCAT 1 cut(s) 602
MseI TTAA 1 cut(s) 656
MslI CAYNNNNRTG 1 cut(s) 216
MspR9I CCNGG 3 cut(s) 25, 71, 512
MunI CAATTG 1 cut(s) 407
MvaI CCWGG 3 cut(s) 25, 71, 512
MwoI GCNNNNNNNGC 2 cut(s) 214, 470
NdeI CATATG 1 cut(s) 401
NdeII GATC 3 cut(s) 375, 580, 688
NlaIII CATG 5 cut(s) 41, 64, 106, 375, 604
NmeAIII GCCGAG 1 cut(s) 363
NmuCI GTSAC 1 cut(s) 325
NsiI ATGCAT 1 cut(s) 602
NspI RCATGY 1 cut(s) 64
PagI TCATGA 1 cut(s) 102
PciI ACATGT 1 cut(s) 60
PfeI GAWTC 2 cut(s) 201, 668
PkrI GCNGC 2 cut(s) 210, 421
PscI ACATGT 1 cut(s) 60
Psp6I CCWGG 3 cut(s) 23, 69, 510
PspGI CCWGG 3 cut(s) 23, 69, 510
PsrI GAACNNNNNNTAC 2 cut(s) 50, 82
PsuI RGATCY 2 cut(s) 375, 688
RsaI GTAC 1 cut(s) 59
RsaNI GTAC 1 cut(s) 58
RseI CAYNNNNRTG 1 cut(s) 216
SaqAI TTAA 1 cut(s) 656
SatI GCNGC 2 cut(s) 209, 420
Sau3AI GATC 3 cut(s) 375, 580, 688
ScrFI CCNGG 3 cut(s) 25, 71, 512
SduI GDGCHC 1 cut(s) 453
SetI ASST 8 cut(s) 8, 81, 110, 164, 475, 484, 496, 737
SfaNI GCATC 1 cut(s) 451
SfcI CTRYAG 1 cut(s) 684
SmiMI CAYNNNNRTG 1 cut(s) 216
SpeI ACTAGT 1 cut(s) 320
Sse9I AATT 5 cut(s) 224, 363, 407, 528, 653
SsiI CCGC 1 cut(s) 21
SspMI CTAG 2 cut(s) 321, 623
StyD4I CCNGG 3 cut(s) 23, 69, 510
TaaI ACNGT 1 cut(s) 341
TaqI TCGA 1 cut(s) 391
TasI AATT 5 cut(s) 224, 363, 407, 528, 653
TatI WGTACW 1 cut(s) 57
TfiI GAWTC 2 cut(s) 201, 668
Tru1I TTAA 1 cut(s) 656
Tru9I TTAA 1 cut(s) 656
TscAI CASTG 2 cut(s) 546, 678
TseFI GTSAC 1 cut(s) 325
TseI GCWGC 2 cut(s) 208, 419
Tsp45I GTSAC 1 cut(s) 325
TspDTI ATGAA 2 cut(s) 105, 309
TspRI CASTG 2 cut(s) 546, 678
XceI RCATGY 1 cut(s) 64
XcmI CCANNNNNNNNNTGG 1 cut(s) 136
XmiI GTMKAC 1 cut(s) 683
XspI CTAG 2 cut(s) 321, 623
Zsp2I ATGCAT 1 cut(s) 602
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.