AT3G61370

Protein of unknown function (DUF3245)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0003157
Physical Location & Seq
Forward (+)
22706242 .. 22708509
2268 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G61370.2

Sequence Viewer

Length: 384 bp
ATGACAACGGAAACGGCAAAGAAGAAGGGAACTCCACAGATTTTTAAAACAGATAAGGCACAAAAACTTGCTGAGAAGTGGGTTGCCAGTATGACGAGGCCCACAGAGGATGATCCTATTGAGACTGCACAAGAAGAACGACCACACAGGCTTGGACTTGGTGCTCAAGTGTCACGACAAACAAAGCGTAGACCTTCAGACGACCCTCTCGATCAGAAACTAGAAGCCAAGTTTGCTGCAGTGAAAAGAAAAAATGCAAGATTGGTTGCAGAAGCTGCTGGTTCTAGTAAGAATGCCGGTGATGACAGTGAGGATGATGATGAATCAGAAAGCAAAAGCCAAGCATTTGGTAAGAAAAAGAAAAATACAAGTACTCCTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3245

Protein Analysis

127

Amino Acids

14.04

Weight (kDa)

9.3

Isoelectric Point (pI)

45.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3245 PF11595 14 - 121 4.5e-17 Protein of unknown function (DUF3245)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 190
AclWI GGATC 1 cut(s) 107
AcuI CTGAAG 1 cut(s) 180
AfaI GTAC 1 cut(s) 373
AluBI AGCT 1 cut(s) 275
AluI AGCT 1 cut(s) 275
Alw21I GWGCWC 1 cut(s) 166
Alw26I GTCTC 1 cut(s) 116
AlwI GGATC 1 cut(s) 107
AlwNI CAGNNNCTG 1 cut(s) 275
AoxI GGCC 1 cut(s) 98
ApeKI GCWGC 2 cut(s) 236, 275
AspS9I GGNCC 1 cut(s) 99
AsuHPI GGTGA 1 cut(s) 311
Bbv12I GWGCWC 1 cut(s) 166
BbvI GCAGC 2 cut(s) 223, 262
BceAI ACGGC 1 cut(s) 30
BcoDI GTCTC 1 cut(s) 116
BfaI CTAG 2 cut(s) 221, 285
BfmI CTRYAG 1 cut(s) 237
BisI GCNGC 2 cut(s) 237, 276
BlsI GCNGC 2 cut(s) 238, 277
BmcAI AGTACT 1 cut(s) 373
BmgT120I GGNCC 1 cut(s) 99
BpuEI CTTGAG 1 cut(s) 150
BsaXI ACNNNNNCTCC 1 cut(s) 358
Bse118I RCCGGY 1 cut(s) 296
Bse1I ACTGG 1 cut(s) 87
BseGI GGATG 2 cut(s) 115, 319
BseMII CTCAG 1 cut(s) 63
BseNI ACTGG 1 cut(s) 87
BseRI GAGGAG 1 cut(s) 366
BseXI GCAGC 2 cut(s) 223, 262
BsgI GTGCAG 1 cut(s) 111
BshFI GGCC 1 cut(s) 100
BsiHKAI GWGCWC 1 cut(s) 166
BsiSI CCGG 1 cut(s) 297
BsmAI GTCTC 1 cut(s) 116
BsmI GAATGC 1 cut(s) 298
BsnI GGCC 1 cut(s) 100
Bsp1286I GDGCHC 1 cut(s) 166
Bsp143I GATC 2 cut(s) 112, 211
BspANI GGCC 1 cut(s) 100
BspCNI CTCAG 1 cut(s) 64
BspMAI CTGCAG 1 cut(s) 241
BspPI GGATC 1 cut(s) 107
BsrFI RCCGGY 1 cut(s) 296
BsrI ACTGG 1 cut(s) 87
BssAI RCCGGY 1 cut(s) 296
BssMI GATC 2 cut(s) 112, 211
Bst4CI ACNGT 1 cut(s) 308
BstAPI GCANNNNNTGC 1 cut(s) 275
BstDEI CTNAG 1 cut(s) 72
BstF5I GGATG 2 cut(s) 115, 319
BstKTI GATC 2 cut(s) 115, 214
BstMAI GTCTC 1 cut(s) 116
BstMBI GATC 2 cut(s) 112, 211
BstMWI GCNNNNNNNGC 2 cut(s) 233, 275
BstSFI CTRYAG 1 cut(s) 237
BstV1I GCAGC 2 cut(s) 223, 262
BstXI CCANNNNNNTGG 1 cut(s) 347
BsuRI GGCC 1 cut(s) 100
BtsCI GGATG 2 cut(s) 115, 319
BtsI GCAGTG 1 cut(s) 246
BtsIMutI CAGTG 2 cut(s) 246, 313
CaiI CAGNNNCTG 1 cut(s) 275
Cfr10I RCCGGY 1 cut(s) 296
Cfr13I GGNCC 1 cut(s) 99
Csp6I GTAC 1 cut(s) 372
CviJI RGCY 5 cut(s) 100, 151, 227, 275, 339
CviKI_1 RGCY 5 cut(s) 100, 151, 227, 275, 339
CviQI GTAC 1 cut(s) 372
DdeI CTNAG 1 cut(s) 72
DpnI GATC 2 cut(s) 114, 213
DpnII GATC 2 cut(s) 112, 211
DraI TTTAAA 1 cut(s) 46
Eco57I CTGAAG 1 cut(s) 180
FaiI YATR 1 cut(s) 92
FblI GTMKAC 1 cut(s) 190
Fnu4HI GCNGC 2 cut(s) 237, 276
FokI GGATG 2 cut(s) 122, 326
Fsp4HI GCNGC 2 cut(s) 237, 276
FspBI CTAG 2 cut(s) 221, 285
GluI GCNGC 2 cut(s) 237, 276
HaeIII GGCC 1 cut(s) 100
HapII CCGG 1 cut(s) 297
HinfI GANTC 1 cut(s) 323
HpaII CCGG 1 cut(s) 297
HphI GGTGA 1 cut(s) 311
Hpy166II GTNNAC 1 cut(s) 191
Hpy188I TCNGA 3 cut(s) 199, 216, 328
Hpy188III TCNNGA 2 cut(s) 174, 209
Hpy8I GTNNAC 1 cut(s) 191
HpyAV CCTTC 2 cut(s) 19, 204
HpyCH4III ACNGT 1 cut(s) 308
HpyCH4V TGCA 4 cut(s) 128, 239, 257, 269
HpyF10VI GCNNNNNNNGC 2 cut(s) 233, 275
HpyF3I CTNAG 1 cut(s) 72
Kzo9I GATC 2 cut(s) 112, 211
LpnPI CCDG 4 cut(s) 100, 133, 264, 310
Lsp1109I GCAGC 2 cut(s) 223, 262
MaeI CTAG 2 cut(s) 221, 285
MaeIII GTNAC 1 cut(s) 171
MalI GATC 2 cut(s) 114, 213
MboI GATC 2 cut(s) 112, 211
MboII GAAGA 2 cut(s) 34, 146
MhlI GDGCHC 1 cut(s) 166
MnlI CCTC 4 cut(s) 90, 100, 216, 304
MseI TTAA 1 cut(s) 45
MspI CCGG 1 cut(s) 297
Mva1269I GAATGC 1 cut(s) 298
MwoI GCNNNNNNNGC 2 cut(s) 233, 275
NdeII GATC 2 cut(s) 112, 211
NmuCI GTSAC 1 cut(s) 171
PcsI WCGNNNNNNNCGW 1 cut(s) 207
PctI GAATGC 1 cut(s) 298
PfeI GAWTC 1 cut(s) 323
PkrI GCNGC 2 cut(s) 238, 277
PspPI GGNCC 1 cut(s) 99
PstI CTGCAG 1 cut(s) 241
PstNI CAGNNNCTG 1 cut(s) 275
RsaI GTAC 1 cut(s) 373
RsaNI GTAC 1 cut(s) 372
SaqAI TTAA 1 cut(s) 45
SatI GCNGC 2 cut(s) 237, 276
Sau3AI GATC 2 cut(s) 112, 211
Sau96I GGNCC 1 cut(s) 99
ScaI AGTACT 1 cut(s) 373
SduI GDGCHC 1 cut(s) 166
SetI ASST 2 cut(s) 196, 277
SfcI CTRYAG 1 cut(s) 237
SmlI CTYRAG 1 cut(s) 165
SmoI CTYRAG 1 cut(s) 165
SspMI CTAG 2 cut(s) 221, 285
TaaI ACNGT 1 cut(s) 308
TaqI TCGA 1 cut(s) 210
TatI WGTACW 1 cut(s) 371
TfiI GAWTC 1 cut(s) 323
Tru1I TTAA 1 cut(s) 45
Tru9I TTAA 1 cut(s) 45
TscAI CASTG 2 cut(s) 246, 313
TseFI GTSAC 1 cut(s) 171
TseI GCWGC 2 cut(s) 236, 275
Tsp45I GTSAC 1 cut(s) 171
TspDTI ATGAA 1 cut(s) 336
TspGWI ACGGA 1 cut(s) 23
TspRI CASTG 2 cut(s) 246, 313
XmiI GTMKAC 1 cut(s) 190
XspI CTAG 2 cut(s) 221, 285
ZrmI AGTACT 1 cut(s) 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.