Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003157

Physical Location & Seq

Genomic Coordinates Forward (+)

14715117 .. 14718006

Gene Structure 2890 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G174800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGTCGGCAACGGGTTCTCACACCAACAAGACGTCGCAGAAAAAGGATCGTCCTCAAATAATTAAATTGAATAAAGCTTTGGAACTGGCTAAAAAATGGGTTAATGACATGACTGAACCAGCAGAAGATGAGCATTTTGAAATACAGAGTCGACCTGCTAGGCTTGGACTAGGTGCTAAAGTTCCCCGGCCATCCAAATTTGTACCTTCAGATGATCCCCTTGAAAGGAAATTACACTACAAATTGGACGCTGGAAGAAGAGCTGCTGCCAAAATTGCCGAGGAGTCCGCCGCCGCATCGGCTGCTAGCGATGATGACGACGATGAAGATTTAGACAGCAGAACCAAAGCGTTTGAGAAGAAAAGACCTGCAGCTCCGGTGACCCCATCGTTAGGGGGAAAGAAAAGGAAGAAAGTTAACCATAACACCCTTGTCAGAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3245

Protein Analysis

148

Amino Acids

16.22

Weight (kDa)

9.63

Isoelectric Point (pI)

59.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003157)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61370 AT3G61370 AT3G61370 AT4G07940
fragaria_vesca	FvH4_7g14280 FvH4_7g14280 FvH4_7g14280
malus_domestica	MD01G1060700.v1.1 MD07G1137000.v1.1
prunus_persica	Prupe.1G174800_v2.0.a1 Prupe.1G174800_v2.0.a1 Prupe.2G170600_v2.0.a1 Prupe.2G170600_v2.0.a1 Prupe.2G170600_v2.0.a1
pyrus_communis	pycom01g09090
rosa_chinensis	RchiOBHm_Chr1g0355271
rosa_laevigata	RLG00000028165 RLG00000034646
rosa_multiflora	Rmu_sc0003115.1_g000045 Rmu_sc0003181.1_g000023 Rmu_sc0004135.1_g000023 Rmu_sc0008923.1_g000004 Rmu_sc0027409.1_g000003
rosa_roxburghii	Rroxscaffold_1G00031710 Rroxscaffold_4G00300540
rosa_rugosa	Rorug01G0246300
rosa_samantha	Rh1AG258400 Rh1BG228000 Rh1CG242100 Rh1DG255800 Rh5AG327200 Rh5BG338300 Rh5CG362700 Rh5DG350400
rosa_wichuraiana	Rw0G018420 Rw1G022810 Rw5G030900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	35
Acc36I	ACCTGC	2 cut(s)	163, 376
AccI	GTMKAC	1 cut(s)	151
AciI	CCGC	3 cut(s)	288, 291, 294
AclWI	GGATC	2 cut(s)	54, 209
AcoI	YGGCCR	1 cut(s)	188
AcsI	RAATTY	1 cut(s)	197
AcuI	CTGAAG	1 cut(s)	192
AcyI	GRCGYC	1 cut(s)	32
AfaI	GTAC	1 cut(s)	204
AfiI	CCNNNNNNNGG	2 cut(s)	225, 392
AgsI	TTSAA	3 cut(s)	70, 140, 224
AjuI	GAANNNNNNNTTGG	2 cut(s)	62, 94
AluBI	AGCT	3 cut(s)	77, 263, 374
AluI	AGCT	3 cut(s)	77, 263, 374
AlwI	GGATC	2 cut(s)	54, 209
AoxI	GGCC	1 cut(s)	188
ApeKI	GCWGC	4 cut(s)	263, 266, 302, 371
ApoI	RAATTY	1 cut(s)	197
AsuC2I	CCSGG	1 cut(s)	187
AsuHPI	GGTGA	1 cut(s)	391
AsuNHI	GCTAGC	1 cut(s)	305
BbvI	GCAGC	4 cut(s)	250, 253, 289, 383
BccI	CCATC	2 cut(s)	199, 394
BcnI	CCSGG	1 cut(s)	187
BfaI	CTAG	3 cut(s)	159, 170, 306
BfmI	CTRYAG	1 cut(s)	369
BfuAI	ACCTGC	2 cut(s)	163, 376
BglI	GCCNNNNNGGC	1 cut(s)	299
BisI	GCNGC	6 cut(s)	264, 267, 291, 294, 303, 372
BlsI	GCNGC	6 cut(s)	265, 268, 292, 295, 304, 373
Bme1390I	CCNGG	1 cut(s)	187
BmrFI	CCNGG	1 cut(s)	187
BmsI	GCATC	1 cut(s)	305
BmtI	GCTAGC	1 cut(s)	309
BpuMI	CCSGG	1 cut(s)	187
BsaHI	GRCGYC	1 cut(s)	32
BsaJI	CCNNGG	2 cut(s)	185, 279
BsaWI	WCCGGW	1 cut(s)	376
Bsc4I	CCNNNNNNNGG	2 cut(s)	225, 392
Bse1I	ACTGG	1 cut(s)	90
BseDI	CCNNGG	2 cut(s)	185, 279
BseGI	GGATG	1 cut(s)	191
BseLI	CCNNNNNNNGG	2 cut(s)	225, 392
BseNI	ACTGG	1 cut(s)	90
BseRI	GAGGAG	1 cut(s)	296
BseXI	GCAGC	4 cut(s)	250, 253, 289, 383
BshFI	GGCC	1 cut(s)	190
BsiSI	CCGG	2 cut(s)	187, 377
BslI	CCNNNNNNNGG	2 cut(s)	225, 392
BsnI	GGCC	1 cut(s)	190
Bsp143I	GATC	2 cut(s)	46, 214
BspACI	CCGC	3 cut(s)	288, 291, 294
BspANI	GGCC	1 cut(s)	190
BspMAI	CTGCAG	1 cut(s)	373
BspMI	ACCTGC	2 cut(s)	163, 376
BspOI	GCTAGC	1 cut(s)	309
BspPI	GGATC	2 cut(s)	54, 209
BspQI	GCTCTTC	1 cut(s)	253
BsrI	ACTGG	1 cut(s)	90
BssECI	CCNNGG	2 cut(s)	185, 279
BssMI	GATC	2 cut(s)	46, 214
BssNI	GRCGYC	1 cut(s)	32
Bst6I	CTCTTC	1 cut(s)	253
BstACI	GRCGYC	1 cut(s)	32
BstAPI	GCANNNNNTGC	1 cut(s)	302
BstC8I	GCNNGC	1 cut(s)	307
BstEII	GGTNACC	1 cut(s)	379
BstF5I	GGATG	1 cut(s)	191
BstKTI	GATC	2 cut(s)	49, 217
BstMBI	GATC	2 cut(s)	46, 214
BstMWI	GCNNNNNNNGC	3 cut(s)	275, 299, 302
BstPI	GGTNACC	1 cut(s)	379
BstSCI	CCNGG	1 cut(s)	185
BstSFI	CTRYAG	1 cut(s)	369
BstV1I	GCAGC	4 cut(s)	250, 253, 289, 383
BsuRI	GGCC	1 cut(s)	190
BtgZI	GCGATG	1 cut(s)	324
BtsCI	GGATG	1 cut(s)	191
BveI	ACCTGC	2 cut(s)	163, 376
Cac8I	GCNNGC	1 cut(s)	307
CseI	GACGC	1 cut(s)	257
Csp6I	GTAC	1 cut(s)	203
CviAII	CATG	1 cut(s)	109
CviJI	RGCY	7 cut(s)	77, 89, 163, 190, 263, 302, 374
CviKI_1	RGCY	7 cut(s)	77, 89, 163, 190, 263, 302, 374
CviQI	GTAC	1 cut(s)	203
DpnI	GATC	2 cut(s)	48, 216
DpnII	GATC	2 cut(s)	46, 214
EaeI	YGGCCR	1 cut(s)	188
Eam1104I	CTCTTC	1 cut(s)	253
EarI	CTCTTC	1 cut(s)	253
EciI	GGCGGA	1 cut(s)	277
Eco57I	CTGAAG	1 cut(s)	192
Eco91I	GGTNACC	1 cut(s)	379
EcoO65I	GGTNACC	1 cut(s)	379
FaeI	CATG	1 cut(s)	112
FaiI	YATR	2 cut(s)	110, 423
FatI	CATG	1 cut(s)	108
FblI	GTMKAC	1 cut(s)	151
Fnu4HI	GCNGC	6 cut(s)	264, 267, 291, 294, 303, 372
FokI	GGATG	1 cut(s)	178
Fsp4HI	GCNGC	6 cut(s)	264, 267, 291, 294, 303, 372
FspBI	CTAG	3 cut(s)	159, 170, 306
GluI	GCNGC	6 cut(s)	264, 267, 291, 294, 303, 372
HaeIII	GGCC	1 cut(s)	190
HapII	CCGG	2 cut(s)	187, 377
HgaI	GACGC	1 cut(s)	257
Hin1I	GRCGYC	1 cut(s)	32
Hin1II	CATG	1 cut(s)	112
HincII	GTYRAC	2 cut(s)	152, 418
HindII	GTYRAC	2 cut(s)	152, 418
HindIII	AAGCTT	1 cut(s)	75
HinfI	GANTC	2 cut(s)	148, 284
HpaI	GTTAAC	1 cut(s)	418
HpaII	CCGG	2 cut(s)	187, 377
HphI	GGTGA	1 cut(s)	391
Hpy166II	GTNNAC	2 cut(s)	152, 418
Hpy188I	TCNGA	2 cut(s)	211, 437
Hpy8I	GTNNAC	2 cut(s)	152, 418
Hpy99I	CGWCG	2 cut(s)	37, 323
HpyAV	CCTTC	1 cut(s)	216
HpyCH4IV	ACGT	1 cut(s)	32
HpyCH4V	TGCA	1 cut(s)	371
HpyF10VI	GCNNNNNNNGC	3 cut(s)	275, 299, 302
HpySE526I	ACGT	1 cut(s)	32
Hsp92I	GRCGYC	1 cut(s)	32
Hsp92II	CATG	1 cut(s)	112
KspAI	GTTAAC	1 cut(s)	418
Kzo9I	GATC	2 cut(s)	46, 214
LguI	GCTCTTC	1 cut(s)	253
LmnI	GCTCC	1 cut(s)	379
LpnPI	CCDG	7 cut(s)	71, 132, 168, 200, 237, 381, 390
Lsp1109I	GCAGC	4 cut(s)	250, 253, 289, 383
LweI	GCATC	1 cut(s)	305
MaeI	CTAG	3 cut(s)	159, 170, 306
MaeII	ACGT	1 cut(s)	32
MaeIII	GTNAC	1 cut(s)	379
MalI	GATC	2 cut(s)	48, 216
MboI	GATC	2 cut(s)	46, 214
MboII	GAAGA	6 cut(s)	137, 267, 270, 338, 370, 421
MluCI	AATT	6 cut(s)	60, 65, 197, 230, 242, 273
MlyI	GAGTC	2 cut(s)	157, 293
MnlI	CCTC	2 cut(s)	63, 274
MseI	TTAA	4 cut(s)	63, 102, 417, 442
MspI	CCGG	2 cut(s)	187, 377
MspR9I	CCNGG	1 cut(s)	187
MwoI	GCNNNNNNNGC	3 cut(s)	275, 299, 302
NciI	CCSGG	1 cut(s)	187
NdeII	GATC	2 cut(s)	46, 214
NheI	GCTAGC	1 cut(s)	305
NlaIII	CATG	1 cut(s)	112
NmeAIII	GCCGAG	1 cut(s)	304
NmuCI	GTSAC	1 cut(s)	379
PciSI	GCTCTTC	1 cut(s)	253
PkrI	GCNGC	6 cut(s)	265, 268, 292, 295, 304, 373
PleI	GAGTC	2 cut(s)	156, 292
PpsI	GAGTC	2 cut(s)	156, 292
PspEI	GGTNACC	1 cut(s)	379
PstI	CTGCAG	1 cut(s)	373
RsaI	GTAC	1 cut(s)	204
RsaNI	GTAC	1 cut(s)	203
SalI	GTCGAC	1 cut(s)	150
SapI	GCTCTTC	1 cut(s)	253
SaqAI	TTAA	4 cut(s)	63, 102, 417, 442
SatI	GCNGC	6 cut(s)	264, 267, 291, 294, 303, 372
Sau3AI	GATC	2 cut(s)	46, 214
SchI	GAGTC	2 cut(s)	157, 293
ScrFI	CCNGG	1 cut(s)	187
SetI	ASST	8 cut(s)	35, 79, 157, 175, 208, 265, 370, 376
SfaNI	GCATC	1 cut(s)	305
SfcI	CTRYAG	1 cut(s)	369
Sse9I	AATT	6 cut(s)	60, 65, 197, 230, 242, 273
SsiI	CCGC	3 cut(s)	288, 291, 294
SspMI	CTAG	3 cut(s)	159, 170, 306
StyD4I	CCNGG	1 cut(s)	185
TaiI	ACGT	1 cut(s)	35
TaqI	TCGA	1 cut(s)	151
TasI	AATT	6 cut(s)	60, 65, 197, 230, 242, 273
TauI	GCSGC	2 cut(s)	293, 296
Tru1I	TTAA	4 cut(s)	63, 102, 417, 442
Tru9I	TTAA	4 cut(s)	63, 102, 417, 442
TseFI	GTSAC	1 cut(s)	379
TseI	GCWGC	4 cut(s)	263, 266, 302, 371
Tsp45I	GTSAC	1 cut(s)	379
TspDTI	ATGAA	1 cut(s)	339
XapI	RAATTY	1 cut(s)	197
XmiI	GTMKAC	1 cut(s)	151
XspI	CTAG	3 cut(s)	159, 170, 306
ZraI	GACGTC	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.