Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0003157

Physical Location & Seq

Genomic Coordinates Forward (+)

21773057 .. 21776389

Gene Structure 3333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G170600.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGAGCACCAACAAGACGCCACAGAAAAAGAATCGTCCTCAAGTAGTTAAATTGGATGAAGCTTTGGAATTGGCTACAAAATGGGTTAATAACATGACTGAACCTGCAGAAGATGAGCCTTTTGAAATACAGAGTAGACCTGCTAGGCTTGGACTAGGTGCTAAAGTTCCCTGGCCATTCAAATTTTCACCTTCAGATGATCCCCTTGAAAGGAAATTACACTACAAGTTGGATGCTGGAAGAAGAAATGCTGCCAAAATTGCCGAGGAGTCTGCATTGGCTGCTGCTAGAGATGACAGTGACGACGATGAAGATTTAGACAGCAGAACCAAAGCGTTTGAGAAGAAAAGACCAGCAGCTCCGGTGACCCCATCTTTAGGGGGAAAGAAAAGGAAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3245

Protein Analysis

134

Amino Acids

14.9

Weight (kDa)

9.3

Isoelectric Point (pI)

66.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003157)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61370 AT3G61370 AT3G61370 AT4G07940
fragaria_vesca	FvH4_7g14280 FvH4_7g14280 FvH4_7g14280
malus_domestica	MD01G1060700.v1.1 MD07G1137000.v1.1
prunus_persica	Prupe.1G174800_v2.0.a1 Prupe.1G174800_v2.0.a1 Prupe.2G170600_v2.0.a1 Prupe.2G170600_v2.0.a1 Prupe.2G170600_v2.0.a1
pyrus_communis	pycom01g09090
rosa_chinensis	RchiOBHm_Chr1g0355271
rosa_laevigata	RLG00000028165 RLG00000034646
rosa_multiflora	Rmu_sc0003115.1_g000045 Rmu_sc0003181.1_g000023 Rmu_sc0004135.1_g000023 Rmu_sc0008923.1_g000004 Rmu_sc0027409.1_g000003
rosa_roxburghii	Rroxscaffold_1G00031710 Rroxscaffold_4G00300540
rosa_rugosa	Rorug01G0246300
rosa_samantha	Rh1AG258400 Rh1BG228000 Rh1CG242100 Rh1DG255800 Rh5AG327200 Rh5BG338300 Rh5CG362700 Rh5DG350400
rosa_wichuraiana	Rw0G018420 Rw1G022810 Rw5G030900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	112, 148
AccI	GTMKAC	1 cut(s)	136
AclWI	GGATC	1 cut(s)	194
AcoI	YGGCCR	1 cut(s)	173
AcsI	RAATTY	1 cut(s)	182
AcuI	CTGAAG	1 cut(s)	177
AcyI	GRCGYC	1 cut(s)	17
AfiI	CCNNNNNNNGG	2 cut(s)	210, 377
AgsI	TTSAA	3 cut(s)	125, 181, 209
AjnI	CCWGG	1 cut(s)	170
AluBI	AGCT	2 cut(s)	62, 359
AluI	AGCT	2 cut(s)	62, 359
Alw21I	GWGCWC	1 cut(s)	8
AlwI	GGATC	1 cut(s)	194
AoxI	GGCC	1 cut(s)	173
ApeKI	GCWGC	4 cut(s)	251, 281, 284, 356
ApoI	RAATTY	1 cut(s)	182
AsuHPI	GGTGA	2 cut(s)	180, 376
BalI	TGGCCA	1 cut(s)	175
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	4 cut(s)	238, 268, 271, 368
BccI	CCATC	1 cut(s)	379
BcgI	CGANNNNNNTGC	2 cut(s)	254, 288
BciT130I	CCWGG	1 cut(s)	172
BfaI	CTAG	3 cut(s)	144, 155, 288
BfmI	CTRYAG	1 cut(s)	105
BfuAI	ACCTGC	2 cut(s)	112, 148
BisI	GCNGC	4 cut(s)	252, 282, 285, 357
BlsI	GCNGC	4 cut(s)	253, 283, 286, 358
Bme1390I	CCNGG	1 cut(s)	172
BmrFI	CCNGG	1 cut(s)	172
BmsI	GCATC	1 cut(s)	223
BpuEI	CTTGAG	1 cut(s)	24
BsaHI	GRCGYC	1 cut(s)	17
BsaJI	CCNNGG	2 cut(s)	170, 264
BsaWI	WCCGGW	1 cut(s)	361
Bsc4I	CCNNNNNNNGG	2 cut(s)	210, 377
BseBI	CCWGG	1 cut(s)	172
BseDI	CCNNGG	2 cut(s)	170, 264
BseGI	GGATG	2 cut(s)	61, 238
BseLI	CCNNNNNNNGG	2 cut(s)	210, 377
BseRI	GAGGAG	1 cut(s)	281
BseXI	GCAGC	4 cut(s)	238, 268, 271, 368
BshFI	GGCC	1 cut(s)	175
BsiHKAI	GWGCWC	1 cut(s)	8
BsiSI	CCGG	1 cut(s)	362
BslI	CCNNNNNNNGG	2 cut(s)	210, 377
BsnI	GGCC	1 cut(s)	175
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	1 cut(s)	199
BspANI	GGCC	1 cut(s)	175
BspMAI	CTGCAG	1 cut(s)	109
BspMI	ACCTGC	2 cut(s)	112, 148
BspPI	GGATC	1 cut(s)	194
BssECI	CCNNGG	2 cut(s)	170, 264
BssMI	GATC	1 cut(s)	199
BssNI	GRCGYC	1 cut(s)	17
Bst2UI	CCWGG	1 cut(s)	172
Bst4CI	ACNGT	1 cut(s)	299
BstACI	GRCGYC	1 cut(s)	17
BstAPI	GCANNNNNTGC	1 cut(s)	281
BstEII	GGTNACC	1 cut(s)	364
BstF5I	GGATG	2 cut(s)	61, 238
BstKTI	GATC	1 cut(s)	202
BstMBI	GATC	1 cut(s)	199
BstMWI	GCNNNNNNNGC	2 cut(s)	260, 281
BstNI	CCWGG	1 cut(s)	172
BstPI	GGTNACC	1 cut(s)	364
BstSCI	CCNGG	1 cut(s)	170
BstSFI	CTRYAG	1 cut(s)	105
BstV1I	GCAGC	4 cut(s)	238, 268, 271, 368
BsuRI	GGCC	1 cut(s)	175
BtsCI	GGATG	2 cut(s)	61, 238
BtsIMutI	CAGTG	1 cut(s)	304
BveI	ACCTGC	2 cut(s)	112, 148
CseI	GACGC	1 cut(s)	25
CviAII	CATG	1 cut(s)	94
CviJI	RGCY	7 cut(s)	62, 74, 118, 148, 175, 281, 359
CviKI_1	RGCY	7 cut(s)	62, 74, 118, 148, 175, 281, 359
DpnI	GATC	1 cut(s)	201
DpnII	GATC	1 cut(s)	199
EaeI	YGGCCR	1 cut(s)	173
Eco57I	CTGAAG	1 cut(s)	177
Eco91I	GGTNACC	1 cut(s)	364
EcoO65I	GGTNACC	1 cut(s)	364
EcoRII	CCWGG	1 cut(s)	170
FaeI	CATG	1 cut(s)	97
FaiI	YATR	1 cut(s)	95
FatI	CATG	1 cut(s)	93
FblI	GTMKAC	1 cut(s)	136
Fnu4HI	GCNGC	4 cut(s)	252, 282, 285, 357
FokI	GGATG	2 cut(s)	68, 245
Fsp4HI	GCNGC	4 cut(s)	252, 282, 285, 357
FspBI	CTAG	3 cut(s)	144, 155, 288
GluI	GCNGC	4 cut(s)	252, 282, 285, 357
HaeIII	GGCC	1 cut(s)	175
HapII	CCGG	1 cut(s)	362
HgaI	GACGC	1 cut(s)	25
Hin1I	GRCGYC	1 cut(s)	17
Hin1II	CATG	1 cut(s)	97
HindIII	AAGCTT	1 cut(s)	60
HinfI	GANTC	2 cut(s)	31, 269
HpaII	CCGG	1 cut(s)	362
HphI	GGTGA	2 cut(s)	180, 376
Hpy166II	GTNNAC	1 cut(s)	137
Hpy188I	TCNGA	1 cut(s)	196
Hpy8I	GTNNAC	1 cut(s)	137
Hpy99I	CGWCG	1 cut(s)	308
HpyAV	CCTTC	1 cut(s)	201
HpyCH4III	ACNGT	1 cut(s)	299
HpyCH4V	TGCA	2 cut(s)	107, 275
HpyF10VI	GCNNNNNNNGC	2 cut(s)	260, 281
Hsp92I	GRCGYC	1 cut(s)	17
Hsp92II	CATG	1 cut(s)	97
Kzo9I	GATC	1 cut(s)	199
LmnI	GCTCC	1 cut(s)	364
LpnPI	CCDG	7 cut(s)	117, 153, 157, 184, 222, 366, 375
Lsp1109I	GCAGC	4 cut(s)	238, 268, 271, 368
LweI	GCATC	1 cut(s)	223
MaeI	CTAG	3 cut(s)	144, 155, 288
MaeIII	GTNAC	2 cut(s)	299, 364
MalI	GATC	1 cut(s)	201
MboI	GATC	1 cut(s)	199
MboII	GAAGA	5 cut(s)	122, 252, 255, 323, 355
MhlI	GDGCHC	1 cut(s)	8
MlsI	TGGCCA	1 cut(s)	175
MluCI	AATT	5 cut(s)	50, 68, 182, 215, 258
MluNI	TGGCCA	1 cut(s)	175
MlyI	GAGTC	1 cut(s)	278
MmeI	TCCRAC	1 cut(s)	210
MnlI	CCTC	2 cut(s)	48, 259
Mox20I	TGGCCA	1 cut(s)	175
MscI	TGGCCA	1 cut(s)	175
MseI	TTAA	2 cut(s)	48, 87
Msp20I	TGGCCA	1 cut(s)	175
MspI	CCGG	1 cut(s)	362
MspR9I	CCNGG	1 cut(s)	172
MvaI	CCWGG	1 cut(s)	172
MwoI	GCNNNNNNNGC	2 cut(s)	260, 281
NdeII	GATC	1 cut(s)	199
NlaIII	CATG	1 cut(s)	97
NmeAIII	GCCGAG	1 cut(s)	289
NmuCI	GTSAC	2 cut(s)	299, 364
PfeI	GAWTC	1 cut(s)	31
PkrI	GCNGC	4 cut(s)	253, 283, 286, 358
PleI	GAGTC	1 cut(s)	277
PpsI	GAGTC	1 cut(s)	277
Psp6I	CCWGG	1 cut(s)	170
PspEI	GGTNACC	1 cut(s)	364
PspGI	CCWGG	1 cut(s)	170
PstI	CTGCAG	1 cut(s)	109
SaqAI	TTAA	2 cut(s)	48, 87
SatI	GCNGC	4 cut(s)	252, 282, 285, 357
Sau3AI	GATC	1 cut(s)	199
SchI	GAGTC	1 cut(s)	278
ScrFI	CCNGG	1 cut(s)	172
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	6 cut(s)	64, 106, 142, 160, 193, 361
SfaNI	GCATC	1 cut(s)	223
SfcI	CTRYAG	1 cut(s)	105
SmlI	CTYRAG	1 cut(s)	39
SmoI	CTYRAG	1 cut(s)	39
Sse9I	AATT	5 cut(s)	50, 68, 182, 215, 258
SspMI	CTAG	3 cut(s)	144, 155, 288
StyD4I	CCNGG	1 cut(s)	170
TaaI	ACNGT	1 cut(s)	299
TasI	AATT	5 cut(s)	50, 68, 182, 215, 258
TfiI	GAWTC	1 cut(s)	31
Tru1I	TTAA	2 cut(s)	48, 87
Tru9I	TTAA	2 cut(s)	48, 87
TscAI	CASTG	1 cut(s)	304
TseFI	GTSAC	2 cut(s)	299, 364
TseI	GCWGC	4 cut(s)	251, 281, 284, 356
Tsp45I	GTSAC	2 cut(s)	299, 364
TspDTI	ATGAA	2 cut(s)	72, 324
TspRI	CASTG	1 cut(s)	304
XapI	RAATTY	1 cut(s)	182
XmiI	GTMKAC	1 cut(s)	136
XspI	CTAG	3 cut(s)	144, 155, 288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.