Rh1CG242100

Protein of unknown function (DUF3245)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0003157
Physical Location & Seq
Forward (+)
50190403 .. 50192140
1738 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG242100.1

Sequence Viewer

Length: 315 bp
ATGAGTAAACTGCCAGCAGAAGATGAGTCTTTTGAGACACAGAGTCGACCTGCTAGGCTTGGACTAGGTGCTAAAGTTCCCCGTGCCTCCACATTTGTGCCTTCAGATGATCCCCTTGAAAGAAAGCTATATTACAAGTTGAATGCTCAAAAGAGAAAAGCTGCCAAAATTGCAGAGGAGTTAGCACCAGCTGCTGCAGATGGTGATGATGACGATGAAGATAATGAAGACAGCAGAACCCGTGCGTTTGAGAAGAAAAAGAGAGCAGCTAATCCACTGAGCCCACCTTTAGGAAAAAAGAAAAGGAGAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3245

Protein Analysis

104

Amino Acids

11.6

Weight (kDa)

9.52

Isoelectric Point (pI)

66.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3245 PF11595 7 - 102 2.3e-10 Protein of unknown function (DUF3245)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 58
AccI GTMKAC 1 cut(s) 46
AclWI GGATC 1 cut(s) 104
AcuI CTGAAG 1 cut(s) 87
AfiI CCNNNNNNNGG 1 cut(s) 290
AgsI TTSAA 2 cut(s) 119, 142
AhdI GACNNNNNGTC 1 cut(s) 42
AleI CACNNNNGTG 1 cut(s) 95
AluBI AGCT 4 cut(s) 127, 161, 191, 269
AluI AGCT 4 cut(s) 127, 161, 191, 269
Alw26I GTCTC 1 cut(s) 29
AlwI GGATC 1 cut(s) 104
AlwNI CAGNNNCTG 1 cut(s) 194
ApeKI GCWGC 4 cut(s) 161, 191, 194, 266
AsuHPI GGTGA 1 cut(s) 215
BanII GRGCYC 1 cut(s) 284
BbsI GAAGAC 1 cut(s) 234
BbvI GCAGC 4 cut(s) 148, 178, 181, 278
BccI CCATC 1 cut(s) 194
BcoDI GTCTC 1 cut(s) 29
BfaI CTAG 2 cut(s) 54, 65
BfmI CTRYAG 1 cut(s) 195
BfuAI ACCTGC 1 cut(s) 58
BisI GCNGC 4 cut(s) 162, 192, 195, 267
BlsI GCNGC 4 cut(s) 163, 193, 196, 268
BmeRI GACNNNNNGTC 1 cut(s) 42
BpiI GAAGAC 1 cut(s) 234
Bsc4I CCNNNNNNNGG 1 cut(s) 290
BseLI CCNNNNNNNGG 1 cut(s) 290
BseMII CTCAG 1 cut(s) 269
BseRI GAGGAG 1 cut(s) 191
BseXI GCAGC 4 cut(s) 148, 178, 181, 278
BslI CCNNNNNNNGG 1 cut(s) 290
BsmAI GTCTC 1 cut(s) 29
BsmI GAATGC 1 cut(s) 148
Bsp1286I GDGCHC 1 cut(s) 284
Bsp143I GATC 1 cut(s) 109
BspCNI CTCAG 1 cut(s) 270
BspMAI CTGCAG 1 cut(s) 199
BspMI ACCTGC 1 cut(s) 58
BspPI GGATC 1 cut(s) 104
BssMI GATC 1 cut(s) 109
BstAPI GCANNNNNTGC 1 cut(s) 191
BstC8I GCNNGC 1 cut(s) 15
BstDEI CTNAG 1 cut(s) 278
BstKTI GATC 1 cut(s) 112
BstMAI GTCTC 1 cut(s) 29
BstMBI GATC 1 cut(s) 109
BstMWI GCNNNNNNNGC 2 cut(s) 170, 191
BstSFI CTRYAG 1 cut(s) 195
BstV1I GCAGC 4 cut(s) 148, 178, 181, 278
BstV2I GAAGAC 1 cut(s) 234
BtsIMutI CAGTG 1 cut(s) 275
BveI ACCTGC 1 cut(s) 58
Cac8I GCNNGC 1 cut(s) 15
CaiI CAGNNNCTG 1 cut(s) 194
CviJI RGCY 6 cut(s) 58, 127, 161, 191, 269, 282
CviKI_1 RGCY 6 cut(s) 58, 127, 161, 191, 269, 282
DdeI CTNAG 1 cut(s) 278
DpnI GATC 1 cut(s) 111
DpnII GATC 1 cut(s) 109
DriI GACNNNNNGTC 1 cut(s) 42
Eam1105I GACNNNNNGTC 1 cut(s) 42
Eco24I GRGCYC 1 cut(s) 284
Eco57I CTGAAG 1 cut(s) 87
EcoT38I GRGCYC 1 cut(s) 284
FaiI YATR 1 cut(s) 130
FblI GTMKAC 1 cut(s) 46
Fnu4HI GCNGC 4 cut(s) 162, 192, 195, 267
FriOI GRGCYC 1 cut(s) 284
Fsp4HI GCNGC 4 cut(s) 162, 192, 195, 267
FspBI CTAG 2 cut(s) 54, 65
GluI GCNGC 4 cut(s) 162, 192, 195, 267
HincII GTYRAC 1 cut(s) 47
HindII GTYRAC 1 cut(s) 47
HinfI GANTC 2 cut(s) 26, 43
HphI GGTGA 1 cut(s) 215
Hpy166II GTNNAC 2 cut(s) 8, 47
Hpy188I TCNGA 1 cut(s) 106
Hpy8I GTNNAC 2 cut(s) 8, 47
HpyAV CCTTC 1 cut(s) 111
HpyCH4V TGCA 2 cut(s) 173, 197
HpyF10VI GCNNNNNNNGC 2 cut(s) 170, 191
HpyF3I CTNAG 1 cut(s) 278
Kzo9I GATC 1 cut(s) 109
LpnPI CCDG 3 cut(s) 27, 63, 201
Lsp1109I GCAGC 4 cut(s) 148, 178, 181, 278
MaeI CTAG 2 cut(s) 54, 65
MalI GATC 1 cut(s) 111
MboI GATC 1 cut(s) 109
MboII GAAGA 4 cut(s) 32, 230, 239, 265
MhlI GDGCHC 1 cut(s) 284
MluCI AATT 1 cut(s) 168
MlyI GAGTC 2 cut(s) 35, 52
MnlI CCTC 2 cut(s) 97, 169
MslI CAYNNNNRTG 1 cut(s) 95
MspA1I CMGCKG 1 cut(s) 191
Mva1269I GAATGC 1 cut(s) 148
MwoI GCNNNNNNNGC 2 cut(s) 170, 191
NdeII GATC 1 cut(s) 109
OliI CACNNNNGTG 1 cut(s) 95
PctI GAATGC 1 cut(s) 148
PkrI GCNGC 4 cut(s) 163, 193, 196, 268
PleI GAGTC 2 cut(s) 34, 51
PpsI GAGTC 2 cut(s) 34, 51
PstI CTGCAG 1 cut(s) 199
PstNI CAGNNNCTG 1 cut(s) 194
PvuII CAGCTG 1 cut(s) 191
RseI CAYNNNNRTG 1 cut(s) 95
SalI GTCGAC 1 cut(s) 45
SatI GCNGC 4 cut(s) 162, 192, 195, 267
Sau3AI GATC 1 cut(s) 109
SchI GAGTC 2 cut(s) 35, 52
SduI GDGCHC 1 cut(s) 284
SetI ASST 7 cut(s) 52, 70, 129, 163, 193, 271, 289
SfcI CTRYAG 1 cut(s) 195
SmiMI CAYNNNNRTG 1 cut(s) 95
Sse9I AATT 1 cut(s) 168
SspMI CTAG 2 cut(s) 54, 65
TaqI TCGA 1 cut(s) 46
TasI AATT 1 cut(s) 168
TscAI CASTG 1 cut(s) 282
TseI GCWGC 4 cut(s) 161, 191, 194, 266
TspDTI ATGAA 2 cut(s) 231, 240
TspRI CASTG 1 cut(s) 282
XmiI GTMKAC 1 cut(s) 46
XspI CTAG 2 cut(s) 54, 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.