Rorug01G0246300

Protein of unknown function (DUF3245)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0003157
Physical Location & Seq
Reverse (-)
35333517 .. 35334875
1359 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0246300.1

Sequence Viewer

Length: 1161 bp
ATGGAACGTGGACCAAGGGTCCTTGAGGCATTAAAGGGGACGGGGTTTGATCATTTATATAGATTAGCACAAAATTTGGGTAGACGTCACCATGACAACCACATGTTAAGTGCTCTTGTCAAGTATTATCATGTTGGTGACATGTGTTTTAAAGTCAACAATCGGAATTTATTTTTTGGTTTAGAAGATGTGCTTTATATCTCTGGGCTTCGGGTAGAAGGGAGACTAGTGATAAAGGGAGAGGAGGAGGTCAATGGAAACCTTTTAGTAGTAGGGTTAGGAGGAGTGCCTGCGATCCACTTGAAGAACAATGCTGTTCGACTTGATTGGTTAAGAGACACGTTTGAGACTGTACCCGAAGTTGTAGATGATGATACATTTGACCGTCATGTTAGAGCATTTTCCCTCTATGTTTTAGGCACTACCATTCTCAGTAATAAGGATCATAGGTTCGTGAATTTGTGCTACTTGAAGTGCTTGTCTGTGATAGGGGAAATTAAGGAGTATGCATGGGGAGTTGCAATGCTTTCCCACGTGCACCATTGTTTACGGCATCATTGCAACACGAGGACGAGTGCAATTGGCGGCCACTTGTTCTTCCTCATGGTGTGGGCGTTGGAGCATATTCCTGCCTTTGCAAGGGAACTCTTCAAGCCCGATGACCCTGCTTATCCTAGCGAGTTCCCGCTATCTTGTAGTTGGGGATTATTGCTTCCCAATGTGCTTTCTAATAGGCACAAAGAGAAGAACTACAAGCAGCACCTGGATCATCTTTGGGAAGACGAAAATCAGGTTACTTGGCAGCCTTATACGAGGCTTAGCGAGAACTTTCTCCCTGAAGAGATTAGGAGCCAGCGACGGATGGGGAGGTTTCGGGGGATTTTGATTCACCCGTTTCACAGGCAGCCCCTCATATTCCATCATCCCGATCTTTGCCCAAGTAAACTTGGGTTTAGAGAGGCTGATGTGACCCATTGTCTCCCCATGCTTGAAGATCGCAAAAGATTCCGAAATTGGCAGCATCATGTAAGAGAGTGGGAGAAGTTGGAGGATTGCTTCATGATGAACCCAGATGAGCAAGATGGCGACCCCTCGGTGCAAGCGAACTCAGCTGAGCAAGGTACGCTATTTTTTTTGTTCATTATTTTCTTCAAAATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3245

Protein Analysis

386

Amino Acids

45.18

Weight (kDa)

6.68

Isoelectric Point (pI)

34.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 31 - 292 4.8e-29 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 88
AccI GTMKAC 1 cut(s) 82
AciI CCGC 2 cut(s) 585, 686
AclWI GGATC 3 cut(s) 289, 450, 774
AcoI YGGCCR 1 cut(s) 586
AcsI RAATTY 3 cut(s) 73, 166, 457
AcuI CTGAAG 1 cut(s) 858
AcvI CACGTG 1 cut(s) 535
AcyI GRCGYC 1 cut(s) 85
AfaI GTAC 2 cut(s) 354, 1123
AfiI CCNNNNNNNGG 1 cut(s) 639
AflIII ACRYGT 3 cut(s) 102, 141, 339
AgsI TTSAA 5 cut(s) 304, 472, 652, 992, 1153
AhdI GACNNNNNGTC 2 cut(s) 17, 975
AhlI ACTAGT 1 cut(s) 226
AjnI CCWGG 1 cut(s) 762
AloI GAACNNNNNNTCC 2 cut(s) 434, 466
AluBI AGCT 1 cut(s) 1112
AluI AGCT 1 cut(s) 1112
Alw21I GWGCWC 2 cut(s) 115, 540
Alw26I GTCTC 4 cut(s) 217, 330, 341, 983
Alw44I GTGCAC 1 cut(s) 536
AlwI GGATC 3 cut(s) 289, 450, 774
AlwNI CAGNNNCTG 1 cut(s) 763
AoxI GGCC 1 cut(s) 586
ApaLI GTGCAC 1 cut(s) 536
ApeKI GCWGC 4 cut(s) 757, 802, 904, 1018
ApoI RAATTY 3 cut(s) 73, 166, 457
AspS9I GGNCC 2 cut(s) 11, 19
AsuHPI GGTGA 3 cut(s) 80, 149, 881
AvaII GGWCC 2 cut(s) 11, 19
BaeGI GKGCMC 1 cut(s) 540
BauI CACGAG 1 cut(s) 565
BbrPI CACGTG 1 cut(s) 535
BbsI GAAGAC 1 cut(s) 786
Bbv12I GWGCWC 2 cut(s) 115, 540
BbvI GCAGC 4 cut(s) 769, 814, 916, 1030
BccI CCATC 3 cut(s) 856, 927, 1076
BceAI ACGGC 1 cut(s) 566
BcgI CGANNNNNNTGC 2 cut(s) 647, 681
BciT130I CCWGG 1 cut(s) 764
BclI TGATCA 1 cut(s) 49
BcoDI GTCTC 4 cut(s) 217, 330, 341, 983
BcuI ACTAGT 1 cut(s) 226
BfaI CTAG 2 cut(s) 227, 675
BisI GCNGC 5 cut(s) 586, 758, 803, 905, 1019
BlpI GCTNAGC 2 cut(s) 818, 1113
BlsI GCNGC 5 cut(s) 587, 759, 804, 906, 1020
Bme1390I CCNGG 1 cut(s) 764
Bme18I GGWCC 2 cut(s) 11, 19
BmeRI GACNNNNNGTC 2 cut(s) 17, 975
BmgT120I GGNCC 2 cut(s) 11, 19
BmiI GGNNCC 2 cut(s) 20, 851
BmrFI CCNGG 1 cut(s) 764
BmsI GCATC 2 cut(s) 562, 1030
BpiI GAAGAC 1 cut(s) 786
Bpu1102I GCTNAGC 2 cut(s) 818, 1113
BpuEI CTTGAG 1 cut(s) 44
BsaAI YACGTR 1 cut(s) 535
BsaHI GRCGYC 1 cut(s) 85
BsaJI CCNNGG 2 cut(s) 14, 1092
Bsc4I CCNNNNNNNGG 1 cut(s) 639
Bse3DI GCAATG 2 cut(s) 528, 556
BseBI CCWGG 1 cut(s) 764
BseDI CCNNGG 2 cut(s) 14, 1092
BseGI GGATG 2 cut(s) 867, 922
BseLI CCNNNNNNNGG 1 cut(s) 639
BseMI GCAATG 2 cut(s) 528, 556
BseMII CTCAG 3 cut(s) 445, 1104, 1122
BseRI GAGGAG 3 cut(s) 257, 260, 297
BseSI GKGCMC 1 cut(s) 540
BseXI GCAGC 4 cut(s) 769, 814, 916, 1030
BshFI GGCC 1 cut(s) 588
BsiHKAI GWGCWC 2 cut(s) 115, 540
BslFI GGGAC 1 cut(s) 52
BslI CCNNNNNNNGG 1 cut(s) 639
BsmAI GTCTC 4 cut(s) 217, 330, 341, 983
BsmFI GGGAC 1 cut(s) 52
BsnI GGCC 1 cut(s) 588
Bsp1286I GDGCHC 2 cut(s) 115, 540
Bsp143I GATC 6 cut(s) 49, 294, 442, 766, 928, 994
Bsp1720I GCTNAGC 2 cut(s) 818, 1113
BspACI CCGC 2 cut(s) 585, 686
BspANI GGCC 1 cut(s) 588
BspCNI CTCAG 3 cut(s) 444, 1105, 1121
BspHI TCATGA 1 cut(s) 1059
BspLI GGNNCC 2 cut(s) 20, 851
BspPI GGATC 3 cut(s) 289, 450, 774
BsrDI GCAATG 2 cut(s) 528, 556
BssECI CCNNGG 2 cut(s) 14, 1092
BssMI GATC 6 cut(s) 49, 294, 442, 766, 928, 994
BssNI GRCGYC 1 cut(s) 85
BssSI CACGAG 1 cut(s) 565
BssT1I CCWWGG 1 cut(s) 14
Bst2BI CACGAG 1 cut(s) 565
Bst2UI CCWGG 1 cut(s) 764
Bst4CI ACNGT 2 cut(s) 352, 386
Bst6I CTCTTC 2 cut(s) 653, 834
BstACI GRCGYC 1 cut(s) 85
BstBAI YACGTR 1 cut(s) 535
BstC8I GCNNGC 3 cut(s) 291, 854, 1101
BstDEI CTNAG 4 cut(s) 431, 818, 1108, 1113
BstENI CCTNNNNNAGG 1 cut(s) 637
BstF5I GGATG 2 cut(s) 867, 922
BstKTI GATC 6 cut(s) 52, 297, 445, 769, 931, 997
BstMAI GTCTC 4 cut(s) 217, 330, 341, 983
BstMBI GATC 6 cut(s) 49, 294, 442, 766, 928, 994
BstMWI GCNNNNNNNGC 2 cut(s) 1109, 1123
BstNI CCWGG 1 cut(s) 764
BstNSI RCATGY 2 cut(s) 106, 145
BstSCI CCNGG 1 cut(s) 762
BstSLI GKGCMC 1 cut(s) 540
BstV1I GCAGC 4 cut(s) 769, 814, 916, 1030
BstV2I GAAGAC 1 cut(s) 786
BsuRI GGCC 1 cut(s) 588
BtsCI GGATG 2 cut(s) 867, 922
Cac8I GCNNGC 3 cut(s) 291, 854, 1101
CaiI CAGNNNCTG 1 cut(s) 763
CciI TCATGA 1 cut(s) 1059
Cfr13I GGNCC 2 cut(s) 11, 19
Csp6I GTAC 2 cut(s) 353, 1122
CviJI RGCY 9 cut(s) 208, 588, 655, 805, 817, 852, 907, 962, 1112
CviKI_1 RGCY 9 cut(s) 208, 588, 655, 805, 817, 852, 907, 962, 1112
CviQI GTAC 2 cut(s) 353, 1122
DdeI CTNAG 4 cut(s) 431, 818, 1108, 1113
DpnI GATC 6 cut(s) 51, 296, 444, 768, 930, 996
DpnII GATC 6 cut(s) 49, 294, 442, 766, 928, 994
DraI TTTAAA 1 cut(s) 151
DriI GACNNNNNGTC 2 cut(s) 17, 975
EaeI YGGCCR 1 cut(s) 586
Eam1104I CTCTTC 2 cut(s) 653, 834
Eam1105I GACNNNNNGTC 2 cut(s) 17, 975
EarI CTCTTC 2 cut(s) 653, 834
Eco130I CCWWGG 1 cut(s) 14
Eco47I GGWCC 2 cut(s) 11, 19
Eco57I CTGAAG 1 cut(s) 858
Eco72I CACGTG 1 cut(s) 535
EcoNI CCTNNNNNAGG 1 cut(s) 637
EcoO109I RGGNCCY 1 cut(s) 19
EcoRII CCWGG 1 cut(s) 762
EcoT14I CCWWGG 1 cut(s) 14
EcoT22I ATGCAT 1 cut(s) 511
ErhI CCWWGG 1 cut(s) 14
FalI AAGNNNNNCTT 2 cut(s) 177, 209
FaqI GGGAC 1 cut(s) 52
FauI CCCGC 1 cut(s) 693
FbaI TGATCA 1 cut(s) 49
FblI GTMKAC 1 cut(s) 82
Fnu4HI GCNGC 5 cut(s) 586, 758, 803, 905, 1019
FokI GGATG 2 cut(s) 874, 909
Fsp4HI GCNGC 5 cut(s) 586, 758, 803, 905, 1019
FspBI CTAG 2 cut(s) 227, 675
GluI GCNGC 5 cut(s) 586, 758, 803, 905, 1019
HaeIII GGCC 1 cut(s) 588
Hin1I GRCGYC 1 cut(s) 85
HincII GTYRAC 1 cut(s) 157
HindII GTYRAC 1 cut(s) 157
HinfI GANTC 2 cut(s) 886, 1005
HphI GGTGA 3 cut(s) 80, 149, 881
Hpy166II GTNNAC 6 cut(s) 11, 83, 157, 538, 548, 944
Hpy188I TCNGA 2 cut(s) 165, 1010
Hpy188III TCNNGA 3 cut(s) 454, 926, 1060
Hpy8I GTNNAC 6 cut(s) 11, 83, 157, 538, 548, 944
Hpy99I CGWCG 1 cut(s) 861
HpyAV CCTTC 1 cut(s) 212
HpyCH4III ACNGT 2 cut(s) 352, 386
HpyCH4IV ACGT 4 cut(s) 7, 85, 341, 534
HpyCH4V TGCA 7 cut(s) 509, 521, 538, 561, 578, 638, 1099
HpyF10VI GCNNNNNNNGC 2 cut(s) 1109, 1123
HpyF3I CTNAG 4 cut(s) 431, 818, 1108, 1113
HpySE526I ACGT 4 cut(s) 7, 85, 341, 534
Hsp92I GRCGYC 1 cut(s) 85
Ksp22I TGATCA 1 cut(s) 49
Kzo9I GATC 6 cut(s) 49, 294, 442, 766, 928, 994
LmnI GCTCC 2 cut(s) 619, 849
Lsp1109I GCAGC 4 cut(s) 769, 814, 916, 1030
LweI GCATC 2 cut(s) 562, 1030
MaeI CTAG 2 cut(s) 227, 675
MaeII ACGT 4 cut(s) 7, 85, 341, 534
MaeIII GTNAC 4 cut(s) 86, 137, 793, 967
MalI GATC 6 cut(s) 51, 296, 444, 768, 930, 996
MboI GATC 6 cut(s) 49, 294, 442, 766, 928, 994
MboII GAAGA 9 cut(s) 197, 316, 589, 640, 757, 791, 851, 1004, 1141
MfeI CAATTG 1 cut(s) 579
MhlI GDGCHC 2 cut(s) 115, 540
MluCI AATT 6 cut(s) 73, 166, 457, 495, 579, 1012
MmeI TCCRAC 2 cut(s) 597, 1026
Mph1103I ATGCAT 1 cut(s) 511
MseI TTAA 5 cut(s) 32, 107, 150, 332, 498
MslI CAYNNNNRTG 1 cut(s) 135
MspA1I CMGCKG 1 cut(s) 1112
MspR9I CCNGG 1 cut(s) 764
MunI CAATTG 1 cut(s) 579
MvaI CCWGG 1 cut(s) 764
MwoI GCNNNNNNNGC 2 cut(s) 1109, 1123
NdeII GATC 6 cut(s) 49, 294, 442, 766, 928, 994
NlaIV GGNNCC 2 cut(s) 20, 851
NmuCI GTSAC 3 cut(s) 86, 137, 967
NsiI ATGCAT 1 cut(s) 511
NspI RCATGY 2 cut(s) 106, 145
PagI TCATGA 1 cut(s) 1059
PciI ACATGT 2 cut(s) 102, 141
PcsI WCGNNNNNNNCGW 1 cut(s) 1100
PfeI GAWTC 2 cut(s) 886, 1005
PkrI GCNGC 5 cut(s) 587, 759, 804, 906, 1020
PmaCI CACGTG 1 cut(s) 535
PmlI CACGTG 1 cut(s) 535
Ppu21I YACGTR 1 cut(s) 535
PpuMI RGGWCCY 1 cut(s) 19
PscI ACATGT 2 cut(s) 102, 141
Psp5II RGGWCCY 1 cut(s) 19
Psp6I CCWGG 1 cut(s) 762
PspCI CACGTG 1 cut(s) 535
PspGI CCWGG 1 cut(s) 762
PspN4I GGNNCC 2 cut(s) 20, 851
PspPI GGNCC 2 cut(s) 11, 19
PspPPI RGGWCCY 1 cut(s) 19
PstNI CAGNNNCTG 1 cut(s) 763
PvuII CAGCTG 1 cut(s) 1112
RsaI GTAC 2 cut(s) 354, 1123
RsaNI GTAC 2 cut(s) 353, 1122
RseI CAYNNNNRTG 1 cut(s) 135
SaqAI TTAA 5 cut(s) 32, 107, 150, 332, 498
SatI GCNGC 5 cut(s) 586, 758, 803, 905, 1019
Sau3AI GATC 6 cut(s) 49, 294, 442, 766, 928, 994
Sau96I GGNCC 2 cut(s) 11, 19
ScrFI CCNGG 1 cut(s) 764
SduI GDGCHC 2 cut(s) 115, 540
SfaNI GCATC 2 cut(s) 562, 1030
SinI GGWCC 2 cut(s) 11, 19
SmiMI CAYNNNNRTG 1 cut(s) 135
SmlI CTYRAG 1 cut(s) 23
SmoI CTYRAG 1 cut(s) 23
SpeI ACTAGT 1 cut(s) 226
Sse9I AATT 6 cut(s) 73, 166, 457, 495, 579, 1012
SsiI CCGC 2 cut(s) 585, 686
SspMI CTAG 2 cut(s) 227, 675
StyD4I CCNGG 1 cut(s) 762
StyI CCWWGG 1 cut(s) 14
TaaI ACNGT 2 cut(s) 352, 386
TaiI ACGT 4 cut(s) 10, 88, 344, 537
TaqI TCGA 1 cut(s) 319
TasI AATT 6 cut(s) 73, 166, 457, 495, 579, 1012
TauI GCSGC 1 cut(s) 588
TfiI GAWTC 2 cut(s) 886, 1005
Tru1I TTAA 5 cut(s) 32, 107, 150, 332, 498
Tru9I TTAA 5 cut(s) 32, 107, 150, 332, 498
TseFI GTSAC 3 cut(s) 86, 137, 967
TseI GCWGC 4 cut(s) 757, 802, 904, 1018
Tsp45I GTSAC 3 cut(s) 86, 137, 967
TspDTI ATGAA 3 cut(s) 1048, 1079, 1129
TspGWI ACGGA 1 cut(s) 874
VneI GTGCAC 1 cut(s) 536
VpaK11BI GGWCC 2 cut(s) 11, 19
XagI CCTNNNNNAGG 1 cut(s) 637
XapI RAATTY 3 cut(s) 73, 166, 457
XceI RCATGY 2 cut(s) 106, 145
XmiI GTMKAC 1 cut(s) 82
XspI CTAG 2 cut(s) 227, 675
ZraI GACGTC 1 cut(s) 86
Zsp2I ATGCAT 1 cut(s) 511
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.