Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0003157

Physical Location & Seq

Genomic Coordinates Forward (+)

10092652 .. 10093878

Gene Structure 1227 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g09090.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGAGCACCGACAAGACGCGGCCGAAAAAGGAACGTCCTCAAATAGTTAAATTGGATAAAGCTTTGGATCTGGCTAAAAAATGGCTTAATACCATGAGTGAACCTGCAGAAGATGAACCATTTGAAATACAGGCTCGGCCTGCTAGGCTTGGACTAGGTGCTGTAGCTCCCCGCCCGTCCAAGTTTGCACCTTCAAATGATCCTCTGGAAAGGAAATTACATTACAAGTTGGATGCCGCAAGAAGAAATGCTGCTAAAATTGCAGAGGAGTCCACACTAACTGCTAAGGATAATGATGACAATGATGATGAAGATAGCAGAACTAGTGCCTTTGCAAAGAAAAGACCAGCAGCTCCAGTAACCCCATCGTTACGGGCGAAGAAAAGGCAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3245

Protein Analysis

132

Amino Acids

14.68

Weight (kDa)

9.8

Isoelectric Point (pI)

67.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003157)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61370 AT3G61370 AT3G61370 AT4G07940
fragaria_vesca	FvH4_7g14280 FvH4_7g14280 FvH4_7g14280
malus_domestica	MD01G1060700.v1.1 MD07G1137000.v1.1
prunus_persica	Prupe.1G174800_v2.0.a1 Prupe.1G174800_v2.0.a1 Prupe.2G170600_v2.0.a1 Prupe.2G170600_v2.0.a1 Prupe.2G170600_v2.0.a1
pyrus_communis	pycom01g09090
rosa_chinensis	RchiOBHm_Chr1g0355271
rosa_laevigata	RLG00000028165 RLG00000034646
rosa_multiflora	Rmu_sc0003115.1_g000045 Rmu_sc0003181.1_g000023 Rmu_sc0004135.1_g000023 Rmu_sc0008923.1_g000004 Rmu_sc0027409.1_g000003
rosa_roxburghii	Rroxscaffold_1G00031710 Rroxscaffold_4G00300540
rosa_rugosa	Rorug01G0246300
rosa_samantha	Rh1AG258400 Rh1BG228000 Rh1CG242100 Rh1DG255800 Rh5AG327200 Rh5BG338300 Rh5CG362700 Rh5DG350400
rosa_wichuraiana	Rw0G018420 Rw1G022810 Rw5G030900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	112
AccII	CGCG	1 cut(s)	19
AciI	CCGC	3 cut(s)	19, 172, 237
AclWI	GGATC	2 cut(s)	75, 194
AcoI	YGGCCR	1 cut(s)	20
AgsI	TTSAA	2 cut(s)	125, 195
AhlI	ACTAGT	1 cut(s)	323
AluBI	AGCT	3 cut(s)	62, 167, 353
AluI	AGCT	3 cut(s)	62, 167, 353
Alw21I	GWGCWC	1 cut(s)	8
AlwI	GGATC	2 cut(s)	75, 194
AoxI	GGCC	2 cut(s)	20, 137
ApeKI	GCWGC	2 cut(s)	251, 350
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	2 cut(s)	238, 362
BccI	CCATC	1 cut(s)	373
BcuI	ACTAGT	1 cut(s)	323
BfaI	CTAG	3 cut(s)	144, 155, 324
BfmI	CTRYAG	2 cut(s)	105, 162
BfuAI	ACCTGC	1 cut(s)	112
BglI	GCCNNNNNGGC	1 cut(s)	145
BisI	GCNGC	4 cut(s)	20, 237, 252, 351
BlsI	GCNGC	4 cut(s)	21, 238, 253, 352
BmsI	GCATC	1 cut(s)	223
BpmI	CTGGAG	1 cut(s)	339
Bpu10I	CCTNAGC	1 cut(s)	285
Bse1I	ACTGG	1 cut(s)	356
BseGI	GGATG	1 cut(s)	238
BseNI	ACTGG	1 cut(s)	356
BseRI	GAGGAG	1 cut(s)	281
BseX3I	CGGCCG	1 cut(s)	20
BseXI	GCAGC	2 cut(s)	238, 362
Bsh1236I	CGCG	1 cut(s)	19
Bsh1285I	CGRYCG	1 cut(s)	23
BshFI	GGCC	2 cut(s)	22, 139
BsiEI	CGRYCG	1 cut(s)	23
BsiHKAI	GWGCWC	1 cut(s)	8
BsnI	GGCC	2 cut(s)	22, 139
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	2 cut(s)	67, 199
BspACI	CCGC	3 cut(s)	19, 172, 237
BspANI	GGCC	2 cut(s)	22, 139
BspFNI	CGCG	1 cut(s)	19
BspMAI	CTGCAG	1 cut(s)	109
BspMI	ACCTGC	1 cut(s)	112
BspPI	GGATC	2 cut(s)	75, 194
BsrI	ACTGG	1 cut(s)	356
BssMI	GATC	2 cut(s)	67, 199
BstC8I	GCNNGC	1 cut(s)	141
BstDEI	CTNAG	1 cut(s)	285
BstF5I	GGATG	1 cut(s)	238
BstFNI	CGCG	1 cut(s)	19
BstKTI	GATC	2 cut(s)	70, 202
BstMBI	GATC	2 cut(s)	67, 199
BstMCI	CGRYCG	1 cut(s)	23
BstMWI	GCNNNNNNNGC	3 cut(s)	140, 145, 260
BstSFI	CTRYAG	2 cut(s)	105, 162
BstUI	CGCG	1 cut(s)	19
BstV1I	GCAGC	2 cut(s)	238, 362
BstX2I	RGATCY	1 cut(s)	67
BstYI	RGATCY	1 cut(s)	67
BstZI	CGGCCG	1 cut(s)	20
BsuRI	GGCC	2 cut(s)	22, 139
BtsCI	GGATG	1 cut(s)	238
BveI	ACCTGC	1 cut(s)	112
Cac8I	GCNNGC	1 cut(s)	141
CseI	GACGC	1 cut(s)	25
CviAII	CATG	1 cut(s)	94
CviJI	RGCY	9 cut(s)	22, 62, 74, 85, 134, 139, 148, 167, 353
CviKI_1	RGCY	9 cut(s)	22, 62, 74, 85, 134, 139, 148, 167, 353
DdeI	CTNAG	1 cut(s)	285
DpnI	GATC	2 cut(s)	69, 201
DpnII	GATC	2 cut(s)	67, 199
EaeI	YGGCCR	1 cut(s)	20
EagI	CGGCCG	1 cut(s)	20
EclXI	CGGCCG	1 cut(s)	20
Eco52I	CGGCCG	1 cut(s)	20
FaeI	CATG	1 cut(s)	97
FaiI	YATR	1 cut(s)	95
FatI	CATG	1 cut(s)	93
FauI	CCCGC	1 cut(s)	179
Fnu4HI	GCNGC	4 cut(s)	20, 237, 252, 351
FokI	GGATG	1 cut(s)	245
Fsp4HI	GCNGC	4 cut(s)	20, 237, 252, 351
FspBI	CTAG	3 cut(s)	144, 155, 324
GluI	GCNGC	4 cut(s)	20, 237, 252, 351
GsuI	CTGGAG	1 cut(s)	339
HaeIII	GGCC	2 cut(s)	22, 139
HgaI	GACGC	1 cut(s)	25
Hin1II	CATG	1 cut(s)	97
HindIII	AAGCTT	1 cut(s)	60
HinfI	GANTC	1 cut(s)	269
Hpy166II	GTNNAC	2 cut(s)	101, 273
Hpy188III	TCNNGA	1 cut(s)	206
Hpy8I	GTNNAC	2 cut(s)	101, 273
HpyAV	CCTTC	1 cut(s)	201
HpyCH4IV	ACGT	1 cut(s)	34
HpyCH4V	TGCA	4 cut(s)	107, 188, 263, 335
HpyF10VI	GCNNNNNNNGC	3 cut(s)	140, 145, 260
HpyF3I	CTNAG	1 cut(s)	285
HpySE526I	ACGT	1 cut(s)	34
Hsp92II	CATG	1 cut(s)	97
Kzo9I	GATC	2 cut(s)	67, 199
LmnI	GCTCC	2 cut(s)	172, 358
LpnPI	CCDG	7 cut(s)	56, 116, 117, 153, 191, 360, 369
Lsp1109I	GCAGC	2 cut(s)	238, 362
LweI	GCATC	1 cut(s)	223
MaeI	CTAG	3 cut(s)	144, 155, 324
MaeII	ACGT	1 cut(s)	34
MaeIII	GTNAC	2 cut(s)	358, 369
MalI	GATC	2 cut(s)	69, 201
MboI	GATC	2 cut(s)	67, 199
MboII	GAAGA	4 cut(s)	122, 255, 323, 391
MflI	RGATCY	1 cut(s)	67
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	3 cut(s)	50, 215, 258
MlyI	GAGTC	1 cut(s)	278
MmeI	TCCRAC	1 cut(s)	210
MnlI	CCTC	3 cut(s)	48, 213, 259
MseI	TTAA	2 cut(s)	48, 87
MvnI	CGCG	1 cut(s)	19
MwoI	GCNNNNNNNGC	3 cut(s)	140, 145, 260
NdeII	GATC	2 cut(s)	67, 199
NlaIII	CATG	1 cut(s)	97
NmeAIII	GCCGAG	1 cut(s)	115
PcsI	WCGNNNNNNNCGW	1 cut(s)	374
PkrI	GCNGC	4 cut(s)	21, 238, 253, 352
PleI	GAGTC	1 cut(s)	277
PpsI	GAGTC	1 cut(s)	277
PstI	CTGCAG	1 cut(s)	109
PsuI	RGATCY	1 cut(s)	67
SaqAI	TTAA	2 cut(s)	48, 87
SatI	GCNGC	4 cut(s)	20, 237, 252, 351
Sau3AI	GATC	2 cut(s)	67, 199
SchI	GAGTC	1 cut(s)	278
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	7 cut(s)	37, 64, 106, 160, 169, 193, 355
SfaNI	GCATC	1 cut(s)	223
SfcI	CTRYAG	2 cut(s)	105, 162
SpeI	ACTAGT	1 cut(s)	323
Sse9I	AATT	3 cut(s)	50, 215, 258
SsiI	CCGC	3 cut(s)	19, 172, 237
SspMI	CTAG	3 cut(s)	144, 155, 324
TaiI	ACGT	1 cut(s)	37
TasI	AATT	3 cut(s)	50, 215, 258
TauI	GCSGC	2 cut(s)	22, 239
Tru1I	TTAA	2 cut(s)	48, 87
Tru9I	TTAA	2 cut(s)	48, 87
TseI	GCWGC	2 cut(s)	251, 350
TspDTI	ATGAA	2 cut(s)	129, 324
XspI	CTAG	3 cut(s)	144, 155, 324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.