Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003115.1

Orthogroup ID

OG0003157

Physical Location & Seq

Genomic Coordinates Forward (+)

230023 .. 232265

Gene Structure 2243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003115.1_g000045.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

atgaacattcttgtccgacagcggccctggcctaggctggccttttggcctcgccaaagctacatggctttgttgccggtagttgtgttgccagggattggaggaactcgttttgacaacgttggtttgaggtttcgaagaagtctggacaatgttagtcgtggcggcatggtagattcaatgagctccaacacaactgagacgaagaaggagaagaagggtcctcctcaaattgttaaattgaataaagctttggctttggccgaaaaatgggtgagtaacatgagtaaactgccagcagaagatgagtcttttgagacacagagtcgacctgctaggcttggactaggtgctaaagttccccgtgcatccacatttgtgccttcagatgatccccttgaaagaaagttatattacaagttgaatgctcaaaagagaaaagctgccaaaattgcagaggagttagcaccagctgctgcagatggtgatgatgacgatgaagataatgaagacagcagaacccgtgcgtttgagaagaaaaagagagcagctaatccactgagcccacctttagggaaaaagaaaaggagaaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3245

Protein Analysis

198

Amino Acids

22.2

Weight (kDa)

10.13

Isoelectric Point (pI)

65.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003157)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61370 AT3G61370 AT3G61370 AT4G07940
fragaria_vesca	FvH4_7g14280 FvH4_7g14280 FvH4_7g14280
malus_domestica	MD01G1060700.v1.1 MD07G1137000.v1.1
prunus_persica	Prupe.1G174800_v2.0.a1 Prupe.1G174800_v2.0.a1 Prupe.2G170600_v2.0.a1 Prupe.2G170600_v2.0.a1 Prupe.2G170600_v2.0.a1
pyrus_communis	pycom01g09090
rosa_chinensis	RchiOBHm_Chr1g0355271
rosa_laevigata	RLG00000028165 RLG00000034646
rosa_multiflora	Rmu_sc0003115.1_g000045 Rmu_sc0003181.1_g000023 Rmu_sc0004135.1_g000023 Rmu_sc0008923.1_g000004 Rmu_sc0027409.1_g000003
rosa_roxburghii	Rroxscaffold_1G00031710 Rroxscaffold_4G00300540
rosa_rugosa	Rorug01G0246300
rosa_samantha	Rh1AG258400 Rh1BG228000 Rh1CG242100 Rh1DG255800 Rh5AG327200 Rh5BG338300 Rh5CG362700 Rh5DG350400
rosa_wichuraiana	Rw0G018420 Rw1G022810 Rw5G030900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	340
AccB7I	CCANNNNNTGG	1 cut(s)	98
AccI	GTMKAC	1 cut(s)	328
AciI	CCGC	2 cut(s)	22, 165
AclI	AACGTT	1 cut(s)	120
AclWI	GGATC	1 cut(s)	386
AcoI	YGGCCR	1 cut(s)	261
AcuI	CTGAAG	1 cut(s)	369
AfiI	CCNNNNNNNGG	4 cut(s)	33, 98, 270, 572
AgsI	TTSAA	4 cut(s)	180, 244, 401, 424
AhdI	GACNNNNNGTC	1 cut(s)	324
AjnI	CCWGG	2 cut(s)	26, 91
AjuI	GAANNNNNNNTTGG	2 cut(s)	236, 268
AleI	CACNNNNGTG	1 cut(s)	377
AluBI	AGCT	6 cut(s)	60, 186, 251, 443, 473, 551
AluI	AGCT	6 cut(s)	60, 186, 251, 443, 473, 551
Alw21I	GWGCWC	1 cut(s)	188
Alw26I	GTCTC	2 cut(s)	194, 311
AlwI	GGATC	1 cut(s)	386
AlwNI	CAGNNNCTG	1 cut(s)	476
AoxI	GGCC	5 cut(s)	23, 29, 39, 47, 261
ApeKI	GCWGC	4 cut(s)	443, 473, 476, 548
AspA2I	CCTAGG	1 cut(s)	32
AspS9I	GGNCC	2 cut(s)	24, 221
AsuHPI	GGTGA	2 cut(s)	286, 497
AsuII	TTCGAA	1 cut(s)	136
AvaII	GGWCC	1 cut(s)	221
AvrII	CCTAGG	1 cut(s)	32
BanII	GRGCYC	2 cut(s)	188, 566
BbsI	GAAGAC	1 cut(s)	516
Bbv12I	GWGCWC	1 cut(s)	188
BbvI	GCAGC	4 cut(s)	430, 460, 463, 560
BccI	CCATC	1 cut(s)	476
BciT130I	CCWGG	2 cut(s)	28, 93
BcoDI	GTCTC	2 cut(s)	194, 311
BfaI	CTAG	3 cut(s)	33, 336, 347
BfmI	CTRYAG	1 cut(s)	477
BfuAI	ACCTGC	1 cut(s)	340
BisI	GCNGC	6 cut(s)	23, 166, 444, 474, 477, 549
BlnI	CCTAGG	1 cut(s)	32
BlsI	GCNGC	6 cut(s)	24, 167, 445, 475, 478, 550
Bme1390I	CCNGG	2 cut(s)	28, 93
Bme18I	GGWCC	1 cut(s)	221
BmeRI	GACNNNNNGTC	1 cut(s)	324
BmgT120I	GGNCC	2 cut(s)	24, 221
BmiI	GGNNCC	1 cut(s)	222
BmrFI	CCNGG	2 cut(s)	28, 93
BmsI	GCATC	1 cut(s)	377
BpiI	GAAGAC	1 cut(s)	516
Bpu14I	TTCGAA	1 cut(s)	136
BsaJI	CCNNGG	3 cut(s)	26, 32, 92
Bsc4I	CCNNNNNNNGG	4 cut(s)	33, 98, 270, 572
Bse118I	RCCGGY	1 cut(s)	76
BseBI	CCWGG	2 cut(s)	28, 93
BseDI	CCNNGG	3 cut(s)	26, 32, 92
BseGI	GGATG	1 cut(s)	368
BseLI	CCNNNNNNNGG	4 cut(s)	33, 98, 270, 572
BseMII	CTCAG	2 cut(s)	189, 551
BseRI	GAGGAG	2 cut(s)	216, 473
BseXI	GCAGC	4 cut(s)	430, 460, 463, 560
BshFI	GGCC	5 cut(s)	25, 31, 41, 49, 263
BsiHKAI	GWGCWC	1 cut(s)	188
BsiSI	CCGG	1 cut(s)	77
BslI	CCNNNNNNNGG	4 cut(s)	33, 98, 270, 572
BsmAI	GTCTC	2 cut(s)	194, 311
BsmBI	CGTCTC	1 cut(s)	194
BsmI	GAATGC	1 cut(s)	430
BsnI	GGCC	5 cut(s)	25, 31, 41, 49, 263
Bsp119I	TTCGAA	1 cut(s)	136
Bsp1286I	GDGCHC	2 cut(s)	188, 566
Bsp143I	GATC	1 cut(s)	391
BspACI	CCGC	2 cut(s)	22, 165
BspANI	GGCC	5 cut(s)	25, 31, 41, 49, 263
BspCNI	CTCAG	2 cut(s)	190, 552
BspLI	GGNNCC	1 cut(s)	222
BspMAI	CTGCAG	1 cut(s)	481
BspMI	ACCTGC	1 cut(s)	340
BspPI	GGATC	1 cut(s)	386
BspT104I	TTCGAA	1 cut(s)	136
BsrFI	RCCGGY	1 cut(s)	76
BssAI	RCCGGY	1 cut(s)	76
BssECI	CCNNGG	3 cut(s)	26, 32, 92
BssMI	GATC	1 cut(s)	391
BssT1I	CCWWGG	1 cut(s)	32
Bst2UI	CCWGG	2 cut(s)	28, 93
BstAPI	GCANNNNNTGC	1 cut(s)	473
BstBI	TTCGAA	1 cut(s)	136
BstC8I	GCNNGC	2 cut(s)	39, 297
BstDEI	CTNAG	2 cut(s)	198, 560
BstENI	CCTNNNNNAGG	1 cut(s)	31
BstF5I	GGATG	1 cut(s)	368
BstKTI	GATC	1 cut(s)	394
BstMAI	GTCTC	2 cut(s)	194, 311
BstMBI	GATC	1 cut(s)	391
BstMWI	GCNNNNNNNGC	3 cut(s)	28, 452, 473
BstNI	CCWGG	2 cut(s)	28, 93
BstSCI	CCNGG	2 cut(s)	26, 91
BstSFI	CTRYAG	1 cut(s)	477
BstV1I	GCAGC	4 cut(s)	430, 460, 463, 560
BstV2I	GAAGAC	1 cut(s)	516
BsuRI	GGCC	5 cut(s)	25, 31, 41, 49, 263
BtsCI	GGATG	1 cut(s)	368
BtsIMutI	CAGTG	1 cut(s)	557
BveI	ACCTGC	1 cut(s)	340
Cac8I	GCNNGC	2 cut(s)	39, 297
CaiI	CAGNNNCTG	1 cut(s)	476
Cfr10I	RCCGGY	1 cut(s)	76
Cfr13I	GGNCC	2 cut(s)	24, 221
CviAII	CATG	3 cut(s)	64, 169, 283
DdeI	CTNAG	2 cut(s)	198, 560
DpnI	GATC	1 cut(s)	393
DpnII	GATC	1 cut(s)	391
DriI	GACNNNNNGTC	1 cut(s)	324
EaeI	YGGCCR	1 cut(s)	261
Eam1105I	GACNNNNNGTC	1 cut(s)	324
Ecl136II	GAGCTC	1 cut(s)	186
Eco130I	CCWWGG	1 cut(s)	32
Eco24I	GRGCYC	2 cut(s)	188, 566
Eco47I	GGWCC	1 cut(s)	221
Eco53kI	GAGCTC	1 cut(s)	186
Eco57I	CTGAAG	1 cut(s)	369
EcoICRI	GAGCTC	1 cut(s)	186
EcoNI	CCTNNNNNAGG	1 cut(s)	31
EcoO109I	RGGNCCY	1 cut(s)	221
EcoRII	CCWGG	2 cut(s)	26, 91
EcoT14I	CCWWGG	1 cut(s)	32
EcoT38I	GRGCYC	2 cut(s)	188, 566
ErhI	CCWWGG	1 cut(s)	32
Esp3I	CGTCTC	1 cut(s)	194
FaeI	CATG	3 cut(s)	67, 172, 286
FaiI	YATR	4 cut(s)	65, 170, 284, 412
FatI	CATG	3 cut(s)	63, 168, 282
FblI	GTMKAC	1 cut(s)	328
Fnu4HI	GCNGC	6 cut(s)	23, 166, 444, 474, 477, 549
FokI	GGATG	1 cut(s)	355
FriOI	GRGCYC	2 cut(s)	188, 566
Fsp4HI	GCNGC	6 cut(s)	23, 166, 444, 474, 477, 549
FspBI	CTAG	3 cut(s)	33, 336, 347
GluI	GCNGC	6 cut(s)	23, 166, 444, 474, 477, 549
HaeIII	GGCC	5 cut(s)	25, 31, 41, 49, 263
HapII	CCGG	1 cut(s)	77
Hin1II	CATG	3 cut(s)	67, 172, 286
HincII	GTYRAC	1 cut(s)	329
HindII	GTYRAC	1 cut(s)	329
HindIII	AAGCTT	1 cut(s)	249
HinfI	GANTC	3 cut(s)	176, 308, 325
HpaII	CCGG	1 cut(s)	77
HphI	GGTGA	2 cut(s)	286, 497
Hpy166II	GTNNAC	2 cut(s)	290, 329
Hpy188I	TCNGA	2 cut(s)	17, 388
Hpy188III	TCNNGA	1 cut(s)	146
Hpy8I	GTNNAC	2 cut(s)	290, 329
HpyAV	CCTTC	3 cut(s)	202, 211, 393
HpyCH4IV	ACGT	1 cut(s)	120
HpyCH4V	TGCA	3 cut(s)	368, 455, 479
HpyF10VI	GCNNNNNNNGC	3 cut(s)	28, 452, 473
HpyF3I	CTNAG	2 cut(s)	198, 560
HpySE526I	ACGT	1 cut(s)	120
Hsp92II	CATG	3 cut(s)	67, 172, 286
Kzo9I	GATC	1 cut(s)	391
LmnI	GCTCC	1 cut(s)	191
Lsp1109I	GCAGC	4 cut(s)	430, 460, 463, 560
LweI	GCATC	1 cut(s)	377
MaeI	CTAG	3 cut(s)	33, 336, 347
MaeII	ACGT	1 cut(s)	120
MaeIII	GTNAC	1 cut(s)	278
MalI	GATC	1 cut(s)	393
MboI	GATC	1 cut(s)	391
MboII	GAAGA	7 cut(s)	150, 217, 226, 314, 512, 521, 547
MhlI	GDGCHC	2 cut(s)	188, 566
MluCI	AATT	3 cut(s)	231, 239, 450
MlyI	GAGTC	2 cut(s)	317, 334
MmeI	TCCRAC	2 cut(s)	40, 213
MnlI	CCTC	6 cut(s)	60, 95, 123, 234, 237, 451
MseI	TTAA	1 cut(s)	237
MslI	CAYNNNNRTG	1 cut(s)	377
MspA1I	CMGCKG	2 cut(s)	22, 473
MspI	CCGG	1 cut(s)	77
MspR9I	CCNGG	2 cut(s)	28, 93
Mva1269I	GAATGC	1 cut(s)	430
MvaI	CCWGG	2 cut(s)	28, 93
MwoI	GCNNNNNNNGC	3 cut(s)	28, 452, 473
NdeII	GATC	1 cut(s)	391
NlaIII	CATG	3 cut(s)	67, 172, 286
NlaIV	GGNNCC	1 cut(s)	222
NspV	TTCGAA	1 cut(s)	136
OliI	CACNNNNGTG	1 cut(s)	377
PctI	GAATGC	1 cut(s)	430
PfeI	GAWTC	1 cut(s)	176
PflMI	CCANNNNNTGG	1 cut(s)	98
PkrI	GCNGC	6 cut(s)	24, 167, 445, 475, 478, 550
PleI	GAGTC	2 cut(s)	316, 333
PpsI	GAGTC	2 cut(s)	316, 333
PpuMI	RGGWCCY	1 cut(s)	221
Psp124BI	GAGCTC	1 cut(s)	188
Psp1406I	AACGTT	1 cut(s)	120
Psp5II	RGGWCCY	1 cut(s)	221
Psp6I	CCWGG	2 cut(s)	26, 91
PspGI	CCWGG	2 cut(s)	26, 91
PspN4I	GGNNCC	1 cut(s)	222
PspPI	GGNCC	2 cut(s)	24, 221
PspPPI	RGGWCCY	1 cut(s)	221
PstI	CTGCAG	1 cut(s)	481
PstNI	CAGNNNCTG	1 cut(s)	476
PvuII	CAGCTG	1 cut(s)	473
RseI	CAYNNNNRTG	1 cut(s)	377
SacI	GAGCTC	1 cut(s)	188
SalI	GTCGAC	1 cut(s)	327
SaqAI	TTAA	1 cut(s)	237
SatI	GCNGC	6 cut(s)	23, 166, 444, 474, 477, 549
Sau3AI	GATC	1 cut(s)	391
Sau96I	GGNCC	2 cut(s)	24, 221
SchI	GAGTC	2 cut(s)	317, 334
ScrFI	CCNGG	2 cut(s)	28, 93
SduI	GDGCHC	2 cut(s)	188, 566
SfaNI	GCATC	1 cut(s)	377
SfcI	CTRYAG	1 cut(s)	477
SfuI	TTCGAA	1 cut(s)	136
SinI	GGWCC	1 cut(s)	221
SmiMI	CAYNNNNRTG	1 cut(s)	377
Sse9I	AATT	3 cut(s)	231, 239, 450
SsiI	CCGC	2 cut(s)	22, 165
SspMI	CTAG	3 cut(s)	33, 336, 347
SstI	GAGCTC	1 cut(s)	188
StyD4I	CCNGG	2 cut(s)	26, 91
StyI	CCWWGG	1 cut(s)	32
TaiI	ACGT	1 cut(s)	123
TaqI	TCGA	2 cut(s)	136, 328
TasI	AATT	3 cut(s)	231, 239, 450
TauI	GCSGC	2 cut(s)	25, 168
TfiI	GAWTC	1 cut(s)	176
Tru1I	TTAA	1 cut(s)	237
Tru9I	TTAA	1 cut(s)	237
TscAI	CASTG	1 cut(s)	564
TseI	GCWGC	4 cut(s)	443, 473, 476, 548
TspDTI	ATGAA	3 cut(s)	17, 513, 522
TspRI	CASTG	1 cut(s)	564
Van91I	CCANNNNNTGG	1 cut(s)	98
VpaK11BI	GGWCC	1 cut(s)	221
XagI	CCTNNNNNAGG	1 cut(s)	31
XmaJI	CCTAGG	1 cut(s)	32
XmiI	GTMKAC	1 cut(s)	328
XspI	CTAG	3 cut(s)	33, 336, 347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.