Rw1G022810

Protein of unknown function (DUF3245)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0003157
Physical Location & Seq
Forward (+)
48189176 .. 48190369
1194 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G022810.1

Sequence Viewer

Length: 417 bp
ATGAGCTCCAACACAACTGAGACGAAGAAGGAGAAGAAGGGTCCTCCTCAAATTGTTAAATTGAATAAAGCTTTGGCTTTGGCCGAAAAATGGGTGAGTAACATGAGTAAACTGCCAGCAGAAGATGAGTCTTTTGAGACACAGAGTCGACCTGCTAGGCTTGGACTAGGTGCTAAAGTTCCCCGTGCATCCACATTTGTGCCTTCAGATGATCCCCTTGAAAGAAAGCTATATTACAAGTTGAATGCTCAAAAGAGAAAAGCTGCCAAAATTGCAGAGGAGTTAGCACCAGCTGCTGCAGATGGTGATGATGACGATGAAGATAATGAAGACAGCAGAACCCGTGCGTTTGAGAAGAAAAAGAGAGCAGCTAATCCACTGAGCCCACCTTTAGGGAAAAAGAAAAGGAGAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3245

Protein Analysis

138

Amino Acids

15.35

Weight (kDa)

9.72

Isoelectric Point (pI)

59.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3245 PF11595 17 - 136 1.1e-12 Protein of unknown function (DUF3245)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 160
AccI GTMKAC 1 cut(s) 148
AclWI GGATC 1 cut(s) 206
AcoI YGGCCR 1 cut(s) 81
AcuI CTGAAG 1 cut(s) 189
AfiI CCNNNNNNNGG 2 cut(s) 90, 392
AgsI TTSAA 3 cut(s) 64, 221, 244
AhdI GACNNNNNGTC 1 cut(s) 144
AjuI GAANNNNNNNTTGG 2 cut(s) 56, 88
AleI CACNNNNGTG 1 cut(s) 197
AluBI AGCT 6 cut(s) 6, 71, 229, 263, 293, 371
AluI AGCT 6 cut(s) 6, 71, 229, 263, 293, 371
Alw21I GWGCWC 1 cut(s) 8
Alw26I GTCTC 2 cut(s) 14, 131
AlwI GGATC 1 cut(s) 206
AlwNI CAGNNNCTG 1 cut(s) 296
AoxI GGCC 1 cut(s) 81
ApeKI GCWGC 4 cut(s) 263, 293, 296, 368
AspS9I GGNCC 1 cut(s) 41
AsuHPI GGTGA 2 cut(s) 106, 317
AvaII GGWCC 1 cut(s) 41
BanII GRGCYC 2 cut(s) 8, 386
BbsI GAAGAC 1 cut(s) 336
Bbv12I GWGCWC 1 cut(s) 8
BbvI GCAGC 4 cut(s) 250, 280, 283, 380
BccI CCATC 1 cut(s) 296
BcoDI GTCTC 2 cut(s) 14, 131
BfaI CTAG 2 cut(s) 156, 167
BfmI CTRYAG 1 cut(s) 297
BfuAI ACCTGC 1 cut(s) 160
BisI GCNGC 4 cut(s) 264, 294, 297, 369
BlsI GCNGC 4 cut(s) 265, 295, 298, 370
Bme18I GGWCC 1 cut(s) 41
BmeRI GACNNNNNGTC 1 cut(s) 144
BmgT120I GGNCC 1 cut(s) 41
BmiI GGNNCC 1 cut(s) 42
BmsI GCATC 1 cut(s) 197
BpiI GAAGAC 1 cut(s) 336
Bsc4I CCNNNNNNNGG 2 cut(s) 90, 392
BseGI GGATG 1 cut(s) 188
BseLI CCNNNNNNNGG 2 cut(s) 90, 392
BseMII CTCAG 2 cut(s) 9, 371
BseRI GAGGAG 2 cut(s) 36, 293
BseXI GCAGC 4 cut(s) 250, 280, 283, 380
BshFI GGCC 1 cut(s) 83
BsiHKAI GWGCWC 1 cut(s) 8
BslI CCNNNNNNNGG 2 cut(s) 90, 392
BsmAI GTCTC 2 cut(s) 14, 131
BsmBI CGTCTC 1 cut(s) 14
BsmI GAATGC 1 cut(s) 250
BsnI GGCC 1 cut(s) 83
Bsp1286I GDGCHC 2 cut(s) 8, 386
Bsp143I GATC 1 cut(s) 211
BspANI GGCC 1 cut(s) 83
BspCNI CTCAG 2 cut(s) 10, 372
BspLI GGNNCC 1 cut(s) 42
BspMAI CTGCAG 1 cut(s) 301
BspMI ACCTGC 1 cut(s) 160
BspPI GGATC 1 cut(s) 206
BssMI GATC 1 cut(s) 211
BstAPI GCANNNNNTGC 1 cut(s) 293
BstC8I GCNNGC 1 cut(s) 117
BstDEI CTNAG 2 cut(s) 18, 380
BstF5I GGATG 1 cut(s) 188
BstKTI GATC 1 cut(s) 214
BstMAI GTCTC 2 cut(s) 14, 131
BstMBI GATC 1 cut(s) 211
BstMWI GCNNNNNNNGC 2 cut(s) 272, 293
BstSFI CTRYAG 1 cut(s) 297
BstV1I GCAGC 4 cut(s) 250, 280, 283, 380
BstV2I GAAGAC 1 cut(s) 336
BsuRI GGCC 1 cut(s) 83
BtsCI GGATG 1 cut(s) 188
BtsIMutI CAGTG 1 cut(s) 377
BveI ACCTGC 1 cut(s) 160
Cac8I GCNNGC 1 cut(s) 117
CaiI CAGNNNCTG 1 cut(s) 296
Cfr13I GGNCC 1 cut(s) 41
CviAII CATG 1 cut(s) 103
DdeI CTNAG 2 cut(s) 18, 380
DpnI GATC 1 cut(s) 213
DpnII GATC 1 cut(s) 211
DriI GACNNNNNGTC 1 cut(s) 144
EaeI YGGCCR 1 cut(s) 81
Eam1105I GACNNNNNGTC 1 cut(s) 144
Ecl136II GAGCTC 1 cut(s) 6
Eco24I GRGCYC 2 cut(s) 8, 386
Eco47I GGWCC 1 cut(s) 41
Eco53kI GAGCTC 1 cut(s) 6
Eco57I CTGAAG 1 cut(s) 189
EcoICRI GAGCTC 1 cut(s) 6
EcoO109I RGGNCCY 1 cut(s) 41
EcoT38I GRGCYC 2 cut(s) 8, 386
Esp3I CGTCTC 1 cut(s) 14
FaeI CATG 1 cut(s) 106
FaiI YATR 2 cut(s) 104, 232
FatI CATG 1 cut(s) 102
FblI GTMKAC 1 cut(s) 148
Fnu4HI GCNGC 4 cut(s) 264, 294, 297, 369
FokI GGATG 1 cut(s) 175
FriOI GRGCYC 2 cut(s) 8, 386
Fsp4HI GCNGC 4 cut(s) 264, 294, 297, 369
FspBI CTAG 2 cut(s) 156, 167
GluI GCNGC 4 cut(s) 264, 294, 297, 369
HaeIII GGCC 1 cut(s) 83
Hin1II CATG 1 cut(s) 106
HincII GTYRAC 1 cut(s) 149
HindII GTYRAC 1 cut(s) 149
HindIII AAGCTT 1 cut(s) 69
HinfI GANTC 2 cut(s) 128, 145
HphI GGTGA 2 cut(s) 106, 317
Hpy166II GTNNAC 2 cut(s) 110, 149
Hpy188I TCNGA 1 cut(s) 208
Hpy8I GTNNAC 2 cut(s) 110, 149
HpyAV CCTTC 3 cut(s) 22, 31, 213
HpyCH4V TGCA 3 cut(s) 188, 275, 299
HpyF10VI GCNNNNNNNGC 2 cut(s) 272, 293
HpyF3I CTNAG 2 cut(s) 18, 380
Hsp92II CATG 1 cut(s) 106
Kzo9I GATC 1 cut(s) 211
LmnI GCTCC 1 cut(s) 11
LpnPI CCDG 3 cut(s) 129, 165, 303
Lsp1109I GCAGC 4 cut(s) 250, 280, 283, 380
LweI GCATC 1 cut(s) 197
MaeI CTAG 2 cut(s) 156, 167
MaeIII GTNAC 1 cut(s) 98
MalI GATC 1 cut(s) 213
MboI GATC 1 cut(s) 211
MboII GAAGA 6 cut(s) 37, 46, 134, 332, 341, 367
MhlI GDGCHC 2 cut(s) 8, 386
MluCI AATT 3 cut(s) 51, 59, 270
MlyI GAGTC 2 cut(s) 137, 154
MmeI TCCRAC 1 cut(s) 33
MnlI CCTC 3 cut(s) 54, 57, 271
MseI TTAA 1 cut(s) 57
MslI CAYNNNNRTG 1 cut(s) 197
MspA1I CMGCKG 1 cut(s) 293
Mva1269I GAATGC 1 cut(s) 250
MwoI GCNNNNNNNGC 2 cut(s) 272, 293
NdeII GATC 1 cut(s) 211
NlaIII CATG 1 cut(s) 106
NlaIV GGNNCC 1 cut(s) 42
OliI CACNNNNGTG 1 cut(s) 197
PctI GAATGC 1 cut(s) 250
PkrI GCNGC 4 cut(s) 265, 295, 298, 370
PleI GAGTC 2 cut(s) 136, 153
PpsI GAGTC 2 cut(s) 136, 153
PpuMI RGGWCCY 1 cut(s) 41
Psp124BI GAGCTC 1 cut(s) 8
Psp5II RGGWCCY 1 cut(s) 41
PspN4I GGNNCC 1 cut(s) 42
PspPI GGNCC 1 cut(s) 41
PspPPI RGGWCCY 1 cut(s) 41
PstI CTGCAG 1 cut(s) 301
PstNI CAGNNNCTG 1 cut(s) 296
PvuII CAGCTG 1 cut(s) 293
RseI CAYNNNNRTG 1 cut(s) 197
SacI GAGCTC 1 cut(s) 8
SalI GTCGAC 1 cut(s) 147
SaqAI TTAA 1 cut(s) 57
SatI GCNGC 4 cut(s) 264, 294, 297, 369
Sau3AI GATC 1 cut(s) 211
Sau96I GGNCC 1 cut(s) 41
SchI GAGTC 2 cut(s) 137, 154
SduI GDGCHC 2 cut(s) 8, 386
SetI ASST 9 cut(s) 8, 73, 154, 172, 231, 265, 295, 373, 391
SfaNI GCATC 1 cut(s) 197
SfcI CTRYAG 1 cut(s) 297
SinI GGWCC 1 cut(s) 41
SmiMI CAYNNNNRTG 1 cut(s) 197
Sse9I AATT 3 cut(s) 51, 59, 270
SspMI CTAG 2 cut(s) 156, 167
SstI GAGCTC 1 cut(s) 8
TaqI TCGA 1 cut(s) 148
TasI AATT 3 cut(s) 51, 59, 270
Tru1I TTAA 1 cut(s) 57
Tru9I TTAA 1 cut(s) 57
TscAI CASTG 1 cut(s) 384
TseI GCWGC 4 cut(s) 263, 293, 296, 368
TspDTI ATGAA 2 cut(s) 333, 342
TspRI CASTG 1 cut(s) 384
VpaK11BI GGWCC 1 cut(s) 41
XmiI GTMKAC 1 cut(s) 148
XspI CTAG 2 cut(s) 156, 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.