AT4G07940

Protein of unknown function (DUF3245)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0003157
Physical Location & Seq
Forward (+)
4792453 .. 4794109
1657 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G07940.1

Sequence Viewer

Length: 420 bp
ATGTTTGAGGATTCGTGGAACGAGCGGTGTAAGGAATGGCCTGGAGGTAGGAAAATAAGTCAGCGGATTGAATTGTGGAACTTGGGTGGTGGTGATACTCTAGTAGCAATGACAACGGAAACGGAAAAGAAGAAGGGACCAACACAGATTCTTAAAACAGACAAGGCAACTAAACTTGCTGAGAAGCTTGGACTTGGTGCTCAAGTGTCACGACAAAAAAAGCGTAGACCCTCAGACGACCCTCTCGATCAGAAACTAGAAGCCAAGTTTGCTGCAGGGAAAAGAAAAAATGCAAGATTGGTTGCAGAATCTGCTGGTTCTAGTAAGAATGCCGGTGATGACAATGAGGATGGTGATGAATCAGAAAGCAAAAGCCAAGCATTTGGTATGAAAAAGAAAAATACAAGTACGCCTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3245

Protein Analysis

139

Amino Acids

15.34

Weight (kDa)

9.43

Isoelectric Point (pI)

42.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3245 PF11595 42 - 133 4.4e-11 Protein of unknown function (DUF3245)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 25
AccI GTMKAC 1 cut(s) 226
AciI CCGC 2 cut(s) 25, 64
AfaI GTAC 1 cut(s) 409
AgsI TTSAA 1 cut(s) 71
AjnI CCWGG 1 cut(s) 40
AluBI AGCT 1 cut(s) 187
AluI AGCT 1 cut(s) 187
Alw21I GWGCWC 1 cut(s) 202
AlwNI CAGNNNCTG 1 cut(s) 311
AoxI GGCC 1 cut(s) 38
ApeKI GCWGC 1 cut(s) 272
AspS9I GGNCC 1 cut(s) 137
AsuHPI GGTGA 3 cut(s) 104, 347, 365
AvaII GGWCC 1 cut(s) 137
BaeI ACNNNNGTAYC 2 cut(s) 87, 120
Bbv12I GWGCWC 1 cut(s) 202
BbvI GCAGC 1 cut(s) 259
BccI CCATC 1 cut(s) 344
BciT130I CCWGG 1 cut(s) 42
BfaI CTAG 3 cut(s) 101, 257, 321
BfmI CTRYAG 1 cut(s) 273
BisI GCNGC 1 cut(s) 273
BlsI GCNGC 1 cut(s) 274
Bme1390I CCNGG 1 cut(s) 42
Bme18I GGWCC 1 cut(s) 137
BmgT120I GGNCC 1 cut(s) 137
BmiI GGNNCC 1 cut(s) 138
BmrFI CCNGG 1 cut(s) 42
BpmI CTGGAG 1 cut(s) 63
BpuEI CTTGAG 1 cut(s) 186
Bse118I RCCGGY 1 cut(s) 332
Bse3DI GCAATG 1 cut(s) 114
BseBI CCWGG 1 cut(s) 42
BseGI GGATG 1 cut(s) 355
BseMI GCAATG 1 cut(s) 114
BseMII CTCAG 2 cut(s) 171, 246
BseXI GCAGC 1 cut(s) 259
BshFI GGCC 1 cut(s) 40
BsiHKAI GWGCWC 1 cut(s) 202
BsiSI CCGG 1 cut(s) 333
BslFI GGGAC 1 cut(s) 150
BsmFI GGGAC 1 cut(s) 150
BsmI GAATGC 1 cut(s) 334
BsnI GGCC 1 cut(s) 40
Bsp1286I GDGCHC 1 cut(s) 202
Bsp143I GATC 1 cut(s) 247
BspACI CCGC 2 cut(s) 25, 64
BspANI GGCC 1 cut(s) 40
BspCNI CTCAG 2 cut(s) 172, 245
BspLI GGNNCC 1 cut(s) 138
BspMAI CTGCAG 1 cut(s) 277
BsrBI CCGCTC 1 cut(s) 25
BsrDI GCAATG 1 cut(s) 114
BsrFI RCCGGY 1 cut(s) 332
BssAI RCCGGY 1 cut(s) 332
BssMI GATC 1 cut(s) 247
Bst2UI CCWGG 1 cut(s) 42
BstAPI GCANNNNNTGC 1 cut(s) 311
BstDEI CTNAG 2 cut(s) 180, 232
BstF5I GGATG 1 cut(s) 355
BstKTI GATC 1 cut(s) 250
BstMBI GATC 1 cut(s) 247
BstMWI GCNNNNNNNGC 2 cut(s) 269, 311
BstNI CCWGG 1 cut(s) 42
BstSCI CCNGG 1 cut(s) 40
BstSFI CTRYAG 1 cut(s) 273
BstV1I GCAGC 1 cut(s) 259
BstXI CCANNNNNNTGG 1 cut(s) 383
BsuRI GGCC 1 cut(s) 40
BtsCI GGATG 1 cut(s) 355
CaiI CAGNNNCTG 1 cut(s) 311
Cfr10I RCCGGY 1 cut(s) 332
Cfr13I GGNCC 1 cut(s) 137
Csp6I GTAC 1 cut(s) 408
CviJI RGCY 4 cut(s) 40, 187, 263, 375
CviKI_1 RGCY 4 cut(s) 40, 187, 263, 375
CviQI GTAC 1 cut(s) 408
DdeI CTNAG 2 cut(s) 180, 232
DpnI GATC 1 cut(s) 249
DpnII GATC 1 cut(s) 247
Eco47I GGWCC 1 cut(s) 137
EcoRII CCWGG 1 cut(s) 40
FaiI YATR 1 cut(s) 389
FaqI GGGAC 1 cut(s) 150
FblI GTMKAC 1 cut(s) 226
Fnu4HI GCNGC 1 cut(s) 273
FokI GGATG 1 cut(s) 362
Fsp4HI GCNGC 1 cut(s) 273
FspBI CTAG 3 cut(s) 101, 257, 321
GluI GCNGC 1 cut(s) 273
GsuI CTGGAG 1 cut(s) 63
HaeIII GGCC 1 cut(s) 40
HapII CCGG 1 cut(s) 333
HindIII AAGCTT 1 cut(s) 185
HinfI GANTC 4 cut(s) 11, 148, 308, 359
HpaII CCGG 1 cut(s) 333
HphI GGTGA 3 cut(s) 104, 347, 365
Hpy166II GTNNAC 1 cut(s) 227
Hpy188I TCNGA 3 cut(s) 235, 252, 364
Hpy188III TCNNGA 2 cut(s) 210, 245
Hpy8I GTNNAC 1 cut(s) 227
HpyAV CCTTC 1 cut(s) 127
HpyCH4V TGCA 3 cut(s) 275, 293, 305
HpyF10VI GCNNNNNNNGC 2 cut(s) 269, 311
HpyF3I CTNAG 2 cut(s) 180, 232
Kzo9I GATC 1 cut(s) 247
LpnPI CCDG 5 cut(s) 27, 54, 261, 300, 346
Lsp1109I GCAGC 1 cut(s) 259
MaeI CTAG 3 cut(s) 101, 257, 321
MaeIII GTNAC 1 cut(s) 207
MalI GATC 1 cut(s) 249
MbiI CCGCTC 1 cut(s) 25
MboI GATC 1 cut(s) 247
MboII GAAGA 1 cut(s) 142
MhlI GDGCHC 1 cut(s) 202
MluCI AATT 1 cut(s) 71
MnlI CCTC 4 cut(s) 38, 241, 252, 340
MseI TTAA 1 cut(s) 153
MspA1I CMGCKG 1 cut(s) 64
MspI CCGG 1 cut(s) 333
MspR9I CCNGG 1 cut(s) 42
Mva1269I GAATGC 1 cut(s) 334
MvaI CCWGG 1 cut(s) 42
MwoI GCNNNNNNNGC 2 cut(s) 269, 311
NdeII GATC 1 cut(s) 247
NlaIV GGNNCC 1 cut(s) 138
NmuCI GTSAC 1 cut(s) 207
PcsI WCGNNNNNNNCGW 1 cut(s) 243
PctI GAATGC 1 cut(s) 334
PfeI GAWTC 4 cut(s) 11, 148, 308, 359
PkrI GCNGC 1 cut(s) 274
Psp6I CCWGG 1 cut(s) 40
PspGI CCWGG 1 cut(s) 40
PspN4I GGNNCC 1 cut(s) 138
PspPI GGNCC 1 cut(s) 137
PstI CTGCAG 1 cut(s) 277
PstNI CAGNNNCTG 1 cut(s) 311
RsaI GTAC 1 cut(s) 409
RsaNI GTAC 1 cut(s) 408
SaqAI TTAA 1 cut(s) 153
SatI GCNGC 1 cut(s) 273
Sau3AI GATC 1 cut(s) 247
Sau96I GGNCC 1 cut(s) 137
ScrFI CCNGG 1 cut(s) 42
SduI GDGCHC 1 cut(s) 202
SetI ASST 2 cut(s) 49, 189
SfcI CTRYAG 1 cut(s) 273
SinI GGWCC 1 cut(s) 137
SmlI CTYRAG 1 cut(s) 201
SmoI CTYRAG 1 cut(s) 201
Sse9I AATT 1 cut(s) 71
SsiI CCGC 2 cut(s) 25, 64
SspMI CTAG 3 cut(s) 101, 257, 321
StyD4I CCNGG 1 cut(s) 40
TaqI TCGA 1 cut(s) 246
TasI AATT 1 cut(s) 71
TfiI GAWTC 4 cut(s) 11, 148, 308, 359
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
TseFI GTSAC 1 cut(s) 207
TseI GCWGC 1 cut(s) 272
Tsp45I GTSAC 1 cut(s) 207
TspDTI ATGAA 2 cut(s) 372, 404
TspGWI ACGGA 2 cut(s) 131, 137
VpaK11BI GGWCC 1 cut(s) 137
XmiI GTMKAC 1 cut(s) 226
XspI CTAG 3 cut(s) 101, 257, 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.