Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00823

Orthogroup ID

OG0003157

Physical Location & Seq

Genomic Coordinates Reverse (-)

34972 .. 36126

Gene Structure 1155 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G018420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGAGCTCCAACACGACTGACACCAAGAAGGAGAAGAAGGGTCCTCCTCAAATTGTTAAATTGAATAAAGCTTTGGCATTGGCTGAAAAATGGGTTAGTAACATGAGTAAATTACCAGCACAAGATGAGTCTTTTGAGACACAGAGTCGACCTGCTAGTTCCCTTGCATCCACATTTGTGCCTTCAGATGATCCCCTTGAAAGAAAGCTATATTACAAGTTGAATGCTCAAAAGAGAAAAGCTGCCAAAATTGCAGAGGAGTTGGCACCAGCTGCTTCTGATGGTGATGATGAAGATAATGAAGACAGCAGAACCAGTGCGTTCGAGAAGAAAAAGAGAGCAGCTAATCCACTCACCCCACCTTTAGGGAAAAAGAAAAGGAGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3245

Protein Analysis

129

Amino Acids

14.3

Weight (kDa)

9.67

Isoelectric Point (pI)

59.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003157)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61370 AT3G61370 AT3G61370 AT4G07940
fragaria_vesca	FvH4_7g14280 FvH4_7g14280 FvH4_7g14280
malus_domestica	MD01G1060700.v1.1 MD07G1137000.v1.1
prunus_persica	Prupe.1G174800_v2.0.a1 Prupe.1G174800_v2.0.a1 Prupe.2G170600_v2.0.a1 Prupe.2G170600_v2.0.a1 Prupe.2G170600_v2.0.a1
pyrus_communis	pycom01g09090
rosa_chinensis	RchiOBHm_Chr1g0355271
rosa_laevigata	RLG00000028165 RLG00000034646
rosa_multiflora	Rmu_sc0003115.1_g000045 Rmu_sc0003181.1_g000023 Rmu_sc0004135.1_g000023 Rmu_sc0008923.1_g000004 Rmu_sc0027409.1_g000003
rosa_roxburghii	Rroxscaffold_1G00031710 Rroxscaffold_4G00300540
rosa_rugosa	Rorug01G0246300
rosa_samantha	Rh1AG258400 Rh1BG228000 Rh1CG242100 Rh1DG255800 Rh5AG327200 Rh5BG338300 Rh5CG362700 Rh5DG350400
rosa_wichuraiana	Rw0G018420 Rw1G022810 Rw5G030900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	160
AccB1I	GGYRCC	1 cut(s)	265
AccI	GTMKAC	1 cut(s)	148
AclWI	GGATC	1 cut(s)	185
AcuI	CTGAAG	1 cut(s)	168
AfiI	CCNNNNNNNGG	1 cut(s)	365
AgsI	TTSAA	3 cut(s)	64, 200, 223
AhdI	GACNNNNNGTC	1 cut(s)	144
AjuI	GAANNNNNNNTTGG	2 cut(s)	56, 88
AleI	CACNNNNGTG	1 cut(s)	176
AluBI	AGCT	6 cut(s)	6, 71, 208, 242, 272, 344
AluI	AGCT	6 cut(s)	6, 71, 208, 242, 272, 344
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	1 cut(s)	131
AlwI	GGATC	1 cut(s)	185
ApeKI	GCWGC	3 cut(s)	242, 272, 341
AspS9I	GGNCC	1 cut(s)	41
AsuHPI	GGTGA	2 cut(s)	296, 346
AvaII	GGWCC	1 cut(s)	41
BanI	GGYRCC	1 cut(s)	265
BanII	GRGCYC	1 cut(s)	8
BbsI	GAAGAC	1 cut(s)	309
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	3 cut(s)	229, 259, 353
BccI	CCATC	1 cut(s)	275
BcoDI	GTCTC	1 cut(s)	131
BfaI	CTAG	1 cut(s)	156
BfuAI	ACCTGC	1 cut(s)	160
BisI	GCNGC	3 cut(s)	243, 273, 342
BlsI	GCNGC	3 cut(s)	244, 274, 343
Bme18I	GGWCC	1 cut(s)	41
BmeRI	GACNNNNNGTC	1 cut(s)	144
BmgT120I	GGNCC	1 cut(s)	41
BmiI	GGNNCC	2 cut(s)	42, 267
BmsI	GCATC	1 cut(s)	176
BpiI	GAAGAC	1 cut(s)	309
Bsc4I	CCNNNNNNNGG	1 cut(s)	365
Bse1I	ACTGG	1 cut(s)	315
BseGI	GGATG	1 cut(s)	167
BseLI	CCNNNNNNNGG	1 cut(s)	365
BseNI	ACTGG	1 cut(s)	315
BseRI	GAGGAG	2 cut(s)	36, 272
BseXI	GCAGC	3 cut(s)	229, 259, 353
BshNI	GGYRCC	1 cut(s)	265
BsiHKAI	GWGCWC	1 cut(s)	8
BslI	CCNNNNNNNGG	1 cut(s)	365
BsmAI	GTCTC	1 cut(s)	131
BsmI	GAATGC	1 cut(s)	229
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	1 cut(s)	190
BspLI	GGNNCC	2 cut(s)	42, 267
BspMI	ACCTGC	1 cut(s)	160
BspPI	GGATC	1 cut(s)	185
BspT107I	GGYRCC	1 cut(s)	265
BsrI	ACTGG	1 cut(s)	315
BssMI	GATC	1 cut(s)	190
BstAPI	GCANNNNNTGC	1 cut(s)	272
BstF5I	GGATG	1 cut(s)	167
BstKTI	GATC	1 cut(s)	193
BstMAI	GTCTC	1 cut(s)	131
BstMBI	GATC	1 cut(s)	190
BstMWI	GCNNNNNNNGC	2 cut(s)	251, 272
BstV1I	GCAGC	3 cut(s)	229, 259, 353
BstV2I	GAAGAC	1 cut(s)	309
BtsCI	GGATG	1 cut(s)	167
BtsIMutI	CAGTG	1 cut(s)	322
BveI	ACCTGC	1 cut(s)	160
Cfr13I	GGNCC	1 cut(s)	41
CviAII	CATG	1 cut(s)	103
CviJI	RGCY	7 cut(s)	6, 71, 83, 208, 242, 272, 344
CviKI_1	RGCY	7 cut(s)	6, 71, 83, 208, 242, 272, 344
DpnI	GATC	1 cut(s)	192
DpnII	GATC	1 cut(s)	190
DriI	GACNNNNNGTC	1 cut(s)	144
Eam1105I	GACNNNNNGTC	1 cut(s)	144
Ecl136II	GAGCTC	1 cut(s)	6
Eco24I	GRGCYC	1 cut(s)	8
Eco47I	GGWCC	1 cut(s)	41
Eco53kI	GAGCTC	1 cut(s)	6
Eco57I	CTGAAG	1 cut(s)	168
EcoICRI	GAGCTC	1 cut(s)	6
EcoO109I	RGGNCCY	1 cut(s)	41
EcoT38I	GRGCYC	1 cut(s)	8
FaeI	CATG	1 cut(s)	106
FaiI	YATR	2 cut(s)	104, 211
FatI	CATG	1 cut(s)	102
FblI	GTMKAC	1 cut(s)	148
Fnu4HI	GCNGC	3 cut(s)	243, 273, 342
FokI	GGATG	1 cut(s)	154
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	3 cut(s)	243, 273, 342
FspBI	CTAG	1 cut(s)	156
GluI	GCNGC	3 cut(s)	243, 273, 342
Hin1II	CATG	1 cut(s)	106
HincII	GTYRAC	1 cut(s)	149
HindII	GTYRAC	1 cut(s)	149
HindIII	AAGCTT	1 cut(s)	69
HinfI	GANTC	2 cut(s)	128, 145
HphI	GGTGA	2 cut(s)	296, 346
Hpy166II	GTNNAC	1 cut(s)	149
Hpy188I	TCNGA	2 cut(s)	187, 280
Hpy188III	TCNNGA	1 cut(s)	325
Hpy8I	GTNNAC	1 cut(s)	149
HpyAV	CCTTC	3 cut(s)	22, 31, 192
HpyCH4V	TGCA	2 cut(s)	167, 254
HpyF10VI	GCNNNNNNNGC	2 cut(s)	251, 272
Hsp92II	CATG	1 cut(s)	106
Kzo9I	GATC	1 cut(s)	190
LmnI	GCTCC	1 cut(s)	11
LpnPI	CCDG	4 cut(s)	129, 165, 282, 328
Lsp1109I	GCAGC	3 cut(s)	229, 259, 353
LweI	GCATC	1 cut(s)	176
MaeI	CTAG	1 cut(s)	156
MaeIII	GTNAC	1 cut(s)	98
MalI	GATC	1 cut(s)	192
MboI	GATC	1 cut(s)	190
MboII	GAAGA	4 cut(s)	46, 305, 314, 340
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	4 cut(s)	51, 59, 110, 249
MlyI	GAGTC	2 cut(s)	137, 154
MmeI	TCCRAC	1 cut(s)	33
MnlI	CCTC	3 cut(s)	54, 57, 250
MseI	TTAA	1 cut(s)	57
MslI	CAYNNNNRTG	1 cut(s)	176
MspA1I	CMGCKG	1 cut(s)	272
Mva1269I	GAATGC	1 cut(s)	229
MwoI	GCNNNNNNNGC	2 cut(s)	251, 272
NdeII	GATC	1 cut(s)	190
NlaIII	CATG	1 cut(s)	106
NlaIV	GGNNCC	2 cut(s)	42, 267
OliI	CACNNNNGTG	1 cut(s)	176
PctI	GAATGC	1 cut(s)	229
PkrI	GCNGC	3 cut(s)	244, 274, 343
PleI	GAGTC	2 cut(s)	136, 153
PpsI	GAGTC	2 cut(s)	136, 153
PpuMI	RGGWCCY	1 cut(s)	41
Psp124BI	GAGCTC	1 cut(s)	8
Psp5II	RGGWCCY	1 cut(s)	41
PspN4I	GGNNCC	2 cut(s)	42, 267
PspPI	GGNCC	1 cut(s)	41
PspPPI	RGGWCCY	1 cut(s)	41
PvuII	CAGCTG	1 cut(s)	272
RseI	CAYNNNNRTG	1 cut(s)	176
SacI	GAGCTC	1 cut(s)	8
SalI	GTCGAC	1 cut(s)	147
SaqAI	TTAA	1 cut(s)	57
SatI	GCNGC	3 cut(s)	243, 273, 342
Sau3AI	GATC	1 cut(s)	190
Sau96I	GGNCC	1 cut(s)	41
SchI	GAGTC	2 cut(s)	137, 154
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	8 cut(s)	8, 73, 154, 210, 244, 274, 346, 364
SfaNI	GCATC	1 cut(s)	176
SinI	GGWCC	1 cut(s)	41
SmiMI	CAYNNNNRTG	1 cut(s)	176
Sse9I	AATT	4 cut(s)	51, 59, 110, 249
SspMI	CTAG	1 cut(s)	156
SstI	GAGCTC	1 cut(s)	8
TaqI	TCGA	2 cut(s)	148, 324
TasI	AATT	4 cut(s)	51, 59, 110, 249
Tru1I	TTAA	1 cut(s)	57
Tru9I	TTAA	1 cut(s)	57
TscAI	CASTG	1 cut(s)	322
TseI	GCWGC	3 cut(s)	242, 272, 341
TspDTI	ATGAA	2 cut(s)	306, 315
TspRI	CASTG	1 cut(s)	322
VpaK11BI	GGWCC	1 cut(s)	41
XmiI	GTMKAC	1 cut(s)	148
XspI	CTAG	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.