Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004135.1

Orthogroup ID

OG0003157

Physical Location & Seq

Genomic Coordinates Reverse (-)

122972 .. 124902

Gene Structure 1931 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004135.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

atgggtcgtgacggcgtggtctggacaatgttagtcgtggcggcatggtccgaacgatgtcaaggcagtgagtcgaggcagaagcgcattagaggcttctggtacggcggtggttgctgggtagattcaatgagctccaacacaactgagacgaagaaggagaagaagggtcctcctcaaattgttaaattgaataaagctttggctttggccgaaaaatgggtgagtaacatgagtaaactgccagcagaagatgagtcttttgagacacagagtcgacctgctaggcttggactaggtgctaaagttccccgtgcatccacatttgtgccttcagatgatccccttgaaagaaagctatattacaagttgaatgctcaaaagagaaaagctgccaaaattgcagaggagttagcaccagctgctgcagatggtgatgatgacgatgaagataatgaagacagcagaacccgtgcgtttgagaagaaaaagagagcagctaatccactgagcccacctttagggaaaaagaaaaggagaaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3245

Protein Analysis

181

Amino Acids

20.24

Weight (kDa)

9.69

Isoelectric Point (pI)

55.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003157)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61370 AT3G61370 AT3G61370 AT4G07940
fragaria_vesca	FvH4_7g14280 FvH4_7g14280 FvH4_7g14280
malus_domestica	MD01G1060700.v1.1 MD07G1137000.v1.1
prunus_persica	Prupe.1G174800_v2.0.a1 Prupe.1G174800_v2.0.a1 Prupe.2G170600_v2.0.a1 Prupe.2G170600_v2.0.a1 Prupe.2G170600_v2.0.a1
pyrus_communis	pycom01g09090
rosa_chinensis	RchiOBHm_Chr1g0355271
rosa_laevigata	RLG00000028165 RLG00000034646
rosa_multiflora	Rmu_sc0003115.1_g000045 Rmu_sc0003181.1_g000023 Rmu_sc0004135.1_g000023 Rmu_sc0008923.1_g000004 Rmu_sc0027409.1_g000003
rosa_roxburghii	Rroxscaffold_1G00031710 Rroxscaffold_4G00300540
rosa_rugosa	Rorug01G0246300
rosa_samantha	Rh1AG258400 Rh1BG228000 Rh1CG242100 Rh1DG255800 Rh5AG327200 Rh5BG338300 Rh5CG362700 Rh5DG350400
rosa_wichuraiana	Rw0G018420 Rw1G022810 Rw5G030900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	17
Acc36I	ACCTGC	1 cut(s)	289
AccI	GTMKAC	1 cut(s)	277
AciI	CCGC	2 cut(s)	41, 108
AclWI	GGATC	1 cut(s)	335
AcoI	YGGCCR	1 cut(s)	210
AcuI	CTGAAG	1 cut(s)	318
AfaI	GTAC	1 cut(s)	104
AfiI	CCNNNNNNNGG	2 cut(s)	219, 521
AgsI	TTSAA	4 cut(s)	129, 193, 350, 373
AhdI	GACNNNNNGTC	1 cut(s)	273
AjuI	GAANNNNNNNTTGG	2 cut(s)	185, 217
AleI	CACNNNNGTG	1 cut(s)	326
AluBI	AGCT	6 cut(s)	135, 200, 358, 392, 422, 500
AluI	AGCT	6 cut(s)	135, 200, 358, 392, 422, 500
Alw21I	GWGCWC	1 cut(s)	137
Alw26I	GTCTC	2 cut(s)	143, 260
AlwI	GGATC	1 cut(s)	335
AlwNI	CAGNNNCTG	1 cut(s)	425
AoxI	GGCC	1 cut(s)	210
ApeKI	GCWGC	4 cut(s)	392, 422, 425, 497
AspLEI	GCGC	1 cut(s)	87
AspS9I	GGNCC	2 cut(s)	48, 170
AsuHPI	GGTGA	2 cut(s)	235, 446
AvaII	GGWCC	2 cut(s)	48, 170
BaeI	ACNNNNGTAYC	2 cut(s)	94, 127
BanII	GRGCYC	2 cut(s)	137, 515
BbsI	GAAGAC	1 cut(s)	465
Bbv12I	GWGCWC	1 cut(s)	137
BbvI	GCAGC	4 cut(s)	379, 409, 412, 509
BccI	CCATC	1 cut(s)	425
BceAI	ACGGC	2 cut(s)	28, 121
BcoDI	GTCTC	2 cut(s)	143, 260
BfaI	CTAG	2 cut(s)	285, 296
BfmI	CTRYAG	1 cut(s)	426
BfuAI	ACCTGC	1 cut(s)	289
BisI	GCNGC	5 cut(s)	42, 393, 423, 426, 498
BlsI	GCNGC	5 cut(s)	43, 394, 424, 427, 499
Bme18I	GGWCC	2 cut(s)	48, 170
BmeRI	GACNNNNNGTC	1 cut(s)	273
BmgT120I	GGNCC	2 cut(s)	48, 170
BmiI	GGNNCC	1 cut(s)	171
BmsI	GCATC	1 cut(s)	326
BpiI	GAAGAC	1 cut(s)	465
Bsc4I	CCNNNNNNNGG	2 cut(s)	219, 521
BseGI	GGATG	1 cut(s)	317
BseLI	CCNNNNNNNGG	2 cut(s)	219, 521
BseMII	CTCAG	2 cut(s)	138, 500
BseRI	GAGGAG	2 cut(s)	165, 422
BseXI	GCAGC	4 cut(s)	379, 409, 412, 509
BseYI	CCCAGC	1 cut(s)	117
BshFI	GGCC	1 cut(s)	212
BsiHKAI	GWGCWC	1 cut(s)	137
BslI	CCNNNNNNNGG	2 cut(s)	219, 521
BsmAI	GTCTC	2 cut(s)	143, 260
BsmBI	CGTCTC	1 cut(s)	143
BsmI	GAATGC	1 cut(s)	379
BsnI	GGCC	1 cut(s)	212
Bsp1286I	GDGCHC	2 cut(s)	137, 515
Bsp143I	GATC	1 cut(s)	340
BspACI	CCGC	2 cut(s)	41, 108
BspANI	GGCC	1 cut(s)	212
BspCNI	CTCAG	2 cut(s)	139, 501
BspLI	GGNNCC	1 cut(s)	171
BspMAI	CTGCAG	1 cut(s)	430
BspMI	ACCTGC	1 cut(s)	289
BspPI	GGATC	1 cut(s)	335
BssMI	GATC	1 cut(s)	340
BstAPI	GCANNNNNTGC	1 cut(s)	422
BstC8I	GCNNGC	1 cut(s)	246
BstDEI	CTNAG	2 cut(s)	147, 509
BstF5I	GGATG	1 cut(s)	317
BstHHI	GCGC	1 cut(s)	87
BstKTI	GATC	1 cut(s)	343
BstMAI	GTCTC	2 cut(s)	143, 260
BstMBI	GATC	1 cut(s)	340
BstMWI	GCNNNNNNNGC	4 cut(s)	93, 114, 401, 422
BstSFI	CTRYAG	1 cut(s)	426
BstV1I	GCAGC	4 cut(s)	379, 409, 412, 509
BstV2I	GAAGAC	1 cut(s)	465
BsuRI	GGCC	1 cut(s)	212
BtsCI	GGATG	1 cut(s)	317
BtsI	GCAGTG	1 cut(s)	73
BtsIMutI	CAGTG	2 cut(s)	73, 506
BveI	ACCTGC	1 cut(s)	289
Cac8I	GCNNGC	1 cut(s)	246
CaiI	CAGNNNCTG	1 cut(s)	425
CfoI	GCGC	1 cut(s)	87
Cfr13I	GGNCC	2 cut(s)	48, 170
Csp6I	GTAC	1 cut(s)	103
CviAII	CATG	2 cut(s)	45, 232
CviQI	GTAC	1 cut(s)	103
DdeI	CTNAG	2 cut(s)	147, 509
DpnI	GATC	1 cut(s)	342
DpnII	GATC	1 cut(s)	340
DrdI	GACNNNNNNGTC	1 cut(s)	17
DriI	GACNNNNNGTC	1 cut(s)	273
DseDI	GACNNNNNNGTC	1 cut(s)	17
EaeI	YGGCCR	1 cut(s)	210
Eam1105I	GACNNNNNGTC	1 cut(s)	273
Ecl136II	GAGCTC	1 cut(s)	135
Eco24I	GRGCYC	2 cut(s)	137, 515
Eco47I	GGWCC	2 cut(s)	48, 170
Eco53kI	GAGCTC	1 cut(s)	135
Eco57I	CTGAAG	1 cut(s)	318
EcoICRI	GAGCTC	1 cut(s)	135
EcoO109I	RGGNCCY	1 cut(s)	170
EcoT38I	GRGCYC	2 cut(s)	137, 515
Esp3I	CGTCTC	1 cut(s)	143
FaeI	CATG	2 cut(s)	48, 235
FaiI	YATR	3 cut(s)	46, 233, 361
FatI	CATG	2 cut(s)	44, 231
FblI	GTMKAC	1 cut(s)	277
Fnu4HI	GCNGC	5 cut(s)	42, 393, 423, 426, 498
FokI	GGATG	1 cut(s)	304
FriOI	GRGCYC	2 cut(s)	137, 515
Fsp4HI	GCNGC	5 cut(s)	42, 393, 423, 426, 498
FspBI	CTAG	2 cut(s)	285, 296
GlaI	GCGC	1 cut(s)	86
GluI	GCNGC	5 cut(s)	42, 393, 423, 426, 498
GsaI	CCCAGC	1 cut(s)	121
HaeIII	GGCC	1 cut(s)	212
HhaI	GCGC	1 cut(s)	87
Hin1II	CATG	2 cut(s)	48, 235
Hin6I	GCGC	1 cut(s)	85
HinP1I	GCGC	1 cut(s)	85
HincII	GTYRAC	1 cut(s)	278
HindII	GTYRAC	1 cut(s)	278
HindIII	AAGCTT	1 cut(s)	198
HinfI	GANTC	4 cut(s)	71, 125, 257, 274
HphI	GGTGA	2 cut(s)	235, 446
Hpy166II	GTNNAC	2 cut(s)	239, 278
Hpy188I	TCNGA	2 cut(s)	52, 337
Hpy188III	TCNNGA	2 cut(s)	8, 22
Hpy8I	GTNNAC	2 cut(s)	239, 278
HpyAV	CCTTC	3 cut(s)	151, 160, 342
HpyCH4V	TGCA	3 cut(s)	317, 404, 428
HpyF10VI	GCNNNNNNNGC	4 cut(s)	93, 114, 401, 422
HpyF3I	CTNAG	2 cut(s)	147, 509
Hsp92II	CATG	2 cut(s)	48, 235
HspAI	GCGC	1 cut(s)	85
Kzo9I	GATC	1 cut(s)	340
LmnI	GCTCC	1 cut(s)	140
LpnPI	CCDG	6 cut(s)	7, 85, 103, 258, 294, 432
Lsp1109I	GCAGC	4 cut(s)	379, 409, 412, 509
LweI	GCATC	1 cut(s)	326
MaeI	CTAG	2 cut(s)	285, 296
MaeIII	GTNAC	2 cut(s)	8, 227
MalI	GATC	1 cut(s)	342
MboI	GATC	1 cut(s)	340
MboII	GAAGA	6 cut(s)	166, 175, 263, 461, 470, 496
MhlI	GDGCHC	2 cut(s)	137, 515
MluCI	AATT	3 cut(s)	180, 188, 399
MlyI	GAGTC	3 cut(s)	80, 266, 283
MmeI	TCCRAC	1 cut(s)	162
MnlI	CCTC	5 cut(s)	69, 86, 183, 186, 400
MseI	TTAA	1 cut(s)	186
MslI	CAYNNNNRTG	1 cut(s)	326
MspA1I	CMGCKG	1 cut(s)	422
Mva1269I	GAATGC	1 cut(s)	379
MwoI	GCNNNNNNNGC	4 cut(s)	93, 114, 401, 422
NdeII	GATC	1 cut(s)	340
NlaIII	CATG	2 cut(s)	48, 235
NlaIV	GGNNCC	1 cut(s)	171
NmuCI	GTSAC	1 cut(s)	8
OliI	CACNNNNGTG	1 cut(s)	326
PctI	GAATGC	1 cut(s)	379
PfeI	GAWTC	1 cut(s)	125
PkrI	GCNGC	5 cut(s)	43, 394, 424, 427, 499
PleI	GAGTC	3 cut(s)	79, 265, 282
PpsI	GAGTC	3 cut(s)	79, 265, 282
PpuMI	RGGWCCY	1 cut(s)	170
Psp124BI	GAGCTC	1 cut(s)	137
Psp5II	RGGWCCY	1 cut(s)	170
PspFI	CCCAGC	1 cut(s)	117
PspN4I	GGNNCC	1 cut(s)	171
PspPI	GGNCC	2 cut(s)	48, 170
PspPPI	RGGWCCY	1 cut(s)	170
PstI	CTGCAG	1 cut(s)	430
PstNI	CAGNNNCTG	1 cut(s)	425
PvuII	CAGCTG	1 cut(s)	422
RsaI	GTAC	1 cut(s)	104
RsaNI	GTAC	1 cut(s)	103
RseI	CAYNNNNRTG	1 cut(s)	326
SacI	GAGCTC	1 cut(s)	137
SalI	GTCGAC	1 cut(s)	276
SaqAI	TTAA	1 cut(s)	186
SatI	GCNGC	5 cut(s)	42, 393, 423, 426, 498
Sau3AI	GATC	1 cut(s)	340
Sau96I	GGNCC	2 cut(s)	48, 170
SchI	GAGTC	3 cut(s)	80, 266, 283
SduI	GDGCHC	2 cut(s)	137, 515
SetI	ASST	9 cut(s)	137, 202, 283, 301, 360, 394, 424, 502, 520
SfaNI	GCATC	1 cut(s)	326
SfcI	CTRYAG	1 cut(s)	426
SinI	GGWCC	2 cut(s)	48, 170
SmiMI	CAYNNNNRTG	1 cut(s)	326
Sse9I	AATT	3 cut(s)	180, 188, 399
SsiI	CCGC	2 cut(s)	41, 108
SspMI	CTAG	2 cut(s)	285, 296
SstI	GAGCTC	1 cut(s)	137
TaqI	TCGA	2 cut(s)	74, 277
TasI	AATT	3 cut(s)	180, 188, 399
TauI	GCSGC	1 cut(s)	44
TfiI	GAWTC	1 cut(s)	125
Tru1I	TTAA	1 cut(s)	186
Tru9I	TTAA	1 cut(s)	186
TscAI	CASTG	2 cut(s)	73, 513
TseFI	GTSAC	1 cut(s)	8
TseI	GCWGC	4 cut(s)	392, 422, 425, 497
Tsp45I	GTSAC	1 cut(s)	8
TspDTI	ATGAA	2 cut(s)	462, 471
TspRI	CASTG	2 cut(s)	73, 513
VpaK11BI	GGWCC	2 cut(s)	48, 170
XmiI	GTMKAC	1 cut(s)	277
XspI	CTAG	2 cut(s)	285, 296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.