Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0027409.1

Orthogroup ID

OG0003157

Physical Location & Seq

Genomic Coordinates Forward (+)

4812 .. 6396

Gene Structure 1585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0027409.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

atgtccatggcttccactgaggatgttacaacatcctttgctgcatctcttgctttggctggtaacgagatcattaatctctcgcaaaggaccgggggtgcgcagcactgccccaggcaatcatacttgctgaccaaacctttggcaaaacaactagcatctctgaatgatttgaggaggtttcaatctctcaaaggtaagcttttaatcgctcttctctggttcgctgatgaagactcaatgagctccaacacgactgacaccaagaaggagaagaagggtcctcctcaaattgttaaattgaataaagctttggcattggctgaaaaatgggttagtaacatgagtaaattaccagcacaagatgagtcttttgagacacagagtcgacctgctaggcttggactaggtgctaaagttccccgtgcatccacatttgtgccttcagatgatccccttgaaagaaagctatattacaagttgaatgctcaaaagagaaaagctgccaaaattgcagaggagttggcaccagctgctgctgatggtgatgatgaagataatgaagacagcagaaccagtgcgttcgagaagaaaaagagagcagctaatccactcaccccacctttagggaaaagaaaaggagaaagtgatctcaccatgagacactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3245

Protein Analysis

222

Amino Acids

24.37

Weight (kDa)

9.5

Isoelectric Point (pI)

50.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003157)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61370 AT3G61370 AT3G61370 AT4G07940
fragaria_vesca	FvH4_7g14280 FvH4_7g14280 FvH4_7g14280
malus_domestica	MD01G1060700.v1.1 MD07G1137000.v1.1
prunus_persica	Prupe.1G174800_v2.0.a1 Prupe.1G174800_v2.0.a1 Prupe.2G170600_v2.0.a1 Prupe.2G170600_v2.0.a1 Prupe.2G170600_v2.0.a1
pyrus_communis	pycom01g09090
rosa_chinensis	RchiOBHm_Chr1g0355271
rosa_laevigata	RLG00000028165 RLG00000034646
rosa_multiflora	Rmu_sc0003115.1_g000045 Rmu_sc0003181.1_g000023 Rmu_sc0004135.1_g000023 Rmu_sc0008923.1_g000004 Rmu_sc0027409.1_g000003
rosa_roxburghii	Rroxscaffold_1G00031710 Rroxscaffold_4G00300540
rosa_rugosa	Rorug01G0246300
rosa_samantha	Rh1AG258400 Rh1BG228000 Rh1CG242100 Rh1DG255800 Rh5AG327200 Rh5BG338300 Rh5CG362700 Rh5DG350400
rosa_wichuraiana	Rw0G018420 Rw1G022810 Rw5G030900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	102
Acc36I	ACCTGC	1 cut(s)	400
AccB1I	GGYRCC	1 cut(s)	526
AccI	GTMKAC	1 cut(s)	388
AclWI	GGATC	1 cut(s)	446
AcuI	CTGAAG	1 cut(s)	429
AfiI	CCNNNNNNNGG	1 cut(s)	626
AgsI	TTSAA	4 cut(s)	185, 304, 461, 484
AhdI	GACNNNNNGTC	1 cut(s)	384
AjnI	CCWGG	1 cut(s)	113
AjuI	GAANNNNNNNTTGG	2 cut(s)	296, 328
AleI	CACNNNNGTG	1 cut(s)	437
AluBI	AGCT	7 cut(s)	202, 246, 311, 469, 503, 533, 605
AluI	AGCT	7 cut(s)	202, 246, 311, 469, 503, 533, 605
Alw21I	GWGCWC	1 cut(s)	248
Alw26I	GTCTC	2 cut(s)	371, 655
AlwI	GGATC	1 cut(s)	446
AlwNI	CAGNNNCTG	1 cut(s)	536
ApeKI	GCWGC	6 cut(s)	41, 103, 503, 533, 536, 602
ArsI	GACNNNNNNTTYG	2 cut(s)	124, 156
AseI	ATTAAT	1 cut(s)	75
AspLEI	GCGC	1 cut(s)	103
AspS9I	GGNCC	2 cut(s)	90, 281
AsuC2I	CCSGG	1 cut(s)	94
AsuHPI	GGTGA	3 cut(s)	557, 607, 646
AvaII	GGWCC	2 cut(s)	90, 281
BanI	GGYRCC	1 cut(s)	526
BanII	GRGCYC	1 cut(s)	248
BbsI	GAAGAC	2 cut(s)	240, 570
Bbv12I	GWGCWC	1 cut(s)	248
BbvI	GCAGC	6 cut(s)	28, 115, 490, 520, 523, 614
BccI	CCATC	1 cut(s)	536
BciT130I	CCWGG	1 cut(s)	115
BcnI	CCSGG	1 cut(s)	94
BcoDI	GTCTC	2 cut(s)	371, 655
BfaI	CTAG	4 cut(s)	155, 396, 407, 667
BfuAI	ACCTGC	1 cut(s)	400
BisI	GCNGC	6 cut(s)	42, 104, 504, 534, 537, 603
BlsI	GCNGC	6 cut(s)	43, 105, 505, 535, 538, 604
Bme1390I	CCNGG	2 cut(s)	94, 115
Bme18I	GGWCC	2 cut(s)	90, 281
BmeRI	GACNNNNNGTC	1 cut(s)	384
BmgT120I	GGNCC	2 cut(s)	90, 281
BmiI	GGNNCC	2 cut(s)	282, 528
BmrFI	CCNGG	2 cut(s)	94, 115
BmsI	GCATC	3 cut(s)	53, 167, 437
BpiI	GAAGAC	2 cut(s)	240, 570
BpuMI	CCSGG	1 cut(s)	94
BsaJI	CCNNGG	3 cut(s)	6, 93, 113
Bsc4I	CCNNNNNNNGG	1 cut(s)	626
Bse1I	ACTGG	1 cut(s)	576
BseBI	CCWGG	1 cut(s)	115
BseDI	CCNNGG	3 cut(s)	6, 93, 113
BseGI	GGATG	3 cut(s)	28, 32, 428
BseLI	CCNNNNNNNGG	1 cut(s)	626
BseMII	CTCAG	1 cut(s)	9
BseNI	ACTGG	1 cut(s)	576
BseRI	GAGGAG	3 cut(s)	190, 276, 533
BseXI	GCAGC	6 cut(s)	28, 115, 490, 520, 523, 614
BshNI	GGYRCC	1 cut(s)	526
BsiHKAI	GWGCWC	1 cut(s)	248
BsiSI	CCGG	1 cut(s)	93
BslI	CCNNNNNNNGG	1 cut(s)	626
BsmAI	GTCTC	2 cut(s)	371, 655
BsmI	GAATGC	1 cut(s)	490
Bsp1286I	GDGCHC	1 cut(s)	248
Bsp143I	GATC	3 cut(s)	69, 451, 649
Bsp19I	CCATGG	1 cut(s)	6
BspCNI	CTCAG	1 cut(s)	10
BspLI	GGNNCC	2 cut(s)	282, 528
BspMI	ACCTGC	1 cut(s)	400
BspPI	GGATC	1 cut(s)	446
BspQI	GCTCTTC	1 cut(s)	219
BspT107I	GGYRCC	1 cut(s)	526
BsrI	ACTGG	1 cut(s)	576
BssECI	CCNNGG	3 cut(s)	6, 93, 113
BssMI	GATC	3 cut(s)	69, 451, 649
BssT1I	CCWWGG	1 cut(s)	6
Bst2UI	CCWGG	1 cut(s)	115
Bst6I	CTCTTC	1 cut(s)	219
BstAPI	GCANNNNNTGC	2 cut(s)	50, 533
BstDEI	CTNAG	1 cut(s)	18
BstDSI	CCRYGG	1 cut(s)	6
BstF5I	GGATG	3 cut(s)	28, 32, 428
BstHHI	GCGC	1 cut(s)	103
BstKTI	GATC	3 cut(s)	72, 454, 652
BstMAI	GTCTC	2 cut(s)	371, 655
BstMBI	GATC	3 cut(s)	69, 451, 649
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 512, 533
BstNI	CCWGG	1 cut(s)	115
BstSCI	CCNGG	2 cut(s)	92, 113
BstV1I	GCAGC	6 cut(s)	28, 115, 490, 520, 523, 614
BstV2I	GAAGAC	2 cut(s)	240, 570
BstXI	CCANNNNNNTGG	1 cut(s)	142
BtgI	CCRYGG	1 cut(s)	6
BtsCI	GGATG	3 cut(s)	28, 32, 428
BtsI	GCAGTG	1 cut(s)	106
BtsIMutI	CAGTG	3 cut(s)	15, 106, 583
BveI	ACCTGC	1 cut(s)	400
CaiI	CAGNNNCTG	1 cut(s)	536
CfoI	GCGC	1 cut(s)	103
Cfr13I	GGNCC	2 cut(s)	90, 281
CviAII	CATG	3 cut(s)	7, 343, 658
DdeI	CTNAG	1 cut(s)	18
DpnI	GATC	3 cut(s)	71, 453, 651
DpnII	GATC	3 cut(s)	69, 451, 649
DriI	GACNNNNNGTC	1 cut(s)	384
Eam1104I	CTCTTC	1 cut(s)	219
Eam1105I	GACNNNNNGTC	1 cut(s)	384
EarI	CTCTTC	1 cut(s)	219
Ecl136II	GAGCTC	1 cut(s)	246
Eco130I	CCWWGG	1 cut(s)	6
Eco24I	GRGCYC	1 cut(s)	248
Eco47I	GGWCC	2 cut(s)	90, 281
Eco53kI	GAGCTC	1 cut(s)	246
Eco57I	CTGAAG	1 cut(s)	429
EcoICRI	GAGCTC	1 cut(s)	246
EcoO109I	RGGNCCY	1 cut(s)	281
EcoRII	CCWGG	1 cut(s)	113
EcoT14I	CCWWGG	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	248
ErhI	CCWWGG	1 cut(s)	6
FaeI	CATG	3 cut(s)	10, 346, 661
FaiI	YATR	5 cut(s)	8, 124, 344, 472, 659
FalI	AAGNNNNNCTT	2 cut(s)	186, 218
FatI	CATG	3 cut(s)	6, 342, 657
FblI	GTMKAC	1 cut(s)	388
Fnu4HI	GCNGC	6 cut(s)	42, 104, 504, 534, 537, 603
FokI	GGATG	3 cut(s)	19, 35, 415
FriOI	GRGCYC	1 cut(s)	248
Fsp4HI	GCNGC	6 cut(s)	42, 104, 504, 534, 537, 603
FspBI	CTAG	4 cut(s)	155, 396, 407, 667
FspI	TGCGCA	1 cut(s)	102
GlaI	GCGC	1 cut(s)	102
GluI	GCNGC	6 cut(s)	42, 104, 504, 534, 537, 603
HapII	CCGG	1 cut(s)	93
HhaI	GCGC	1 cut(s)	103
Hin1II	CATG	3 cut(s)	10, 346, 661
Hin6I	GCGC	1 cut(s)	101
HinP1I	GCGC	1 cut(s)	101
HincII	GTYRAC	1 cut(s)	389
HindII	GTYRAC	1 cut(s)	389
HindIII	AAGCTT	2 cut(s)	200, 309
HinfI	GANTC	3 cut(s)	236, 368, 385
HpaII	CCGG	1 cut(s)	93
HphI	GGTGA	3 cut(s)	557, 607, 646
Hpy166II	GTNNAC	1 cut(s)	389
Hpy188I	TCNGA	2 cut(s)	165, 448
Hpy188III	TCNNGA	1 cut(s)	586
Hpy8I	GTNNAC	1 cut(s)	389
HpyAV	CCTTC	3 cut(s)	262, 271, 453
HpyCH4V	TGCA	3 cut(s)	44, 428, 515
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 512, 533
HpyF3I	CTNAG	1 cut(s)	18
Hsp92II	CATG	3 cut(s)	10, 346, 661
HspAI	GCGC	1 cut(s)	101
Kzo9I	GATC	3 cut(s)	69, 451, 649
LguI	GCTCTTC	1 cut(s)	219
LmnI	GCTCC	1 cut(s)	251
LpnPI	CCDG	9 cut(s)	45, 100, 106, 127, 205, 369, 405, 543, 589
Lsp1109I	GCAGC	6 cut(s)	28, 115, 490, 520, 523, 614
LweI	GCATC	3 cut(s)	53, 167, 437
MaeI	CTAG	4 cut(s)	155, 396, 407, 667
MaeIII	GTNAC	3 cut(s)	25, 62, 338
MalI	GATC	3 cut(s)	71, 453, 651
MboI	GATC	3 cut(s)	69, 451, 649
MboII	GAAGA	6 cut(s)	206, 245, 286, 566, 575, 601
MhlI	GDGCHC	1 cut(s)	248
MluCI	AATT	4 cut(s)	291, 299, 350, 510
MlyI	GAGTC	3 cut(s)	230, 377, 394
MmeI	TCCRAC	1 cut(s)	273
MnlI	CCTC	6 cut(s)	13, 168, 171, 294, 297, 511
MseI	TTAA	3 cut(s)	75, 206, 297
MslI	CAYNNNNRTG	1 cut(s)	437
MspA1I	CMGCKG	1 cut(s)	533
MspI	CCGG	1 cut(s)	93
MspR9I	CCNGG	2 cut(s)	94, 115
Mva1269I	GAATGC	1 cut(s)	490
MvaI	CCWGG	1 cut(s)	115
MwoI	GCNNNNNNNGC	3 cut(s)	50, 512, 533
NciI	CCSGG	1 cut(s)	94
NcoI	CCATGG	1 cut(s)	6
NdeII	GATC	3 cut(s)	69, 451, 649
NlaIII	CATG	3 cut(s)	10, 346, 661
NlaIV	GGNNCC	2 cut(s)	282, 528
NsbI	TGCGCA	1 cut(s)	102
OliI	CACNNNNGTG	1 cut(s)	437
PciSI	GCTCTTC	1 cut(s)	219
PctI	GAATGC	1 cut(s)	490
PkrI	GCNGC	6 cut(s)	43, 105, 505, 535, 538, 604
PleI	GAGTC	3 cut(s)	230, 376, 393
PpsI	GAGTC	3 cut(s)	230, 376, 393
PpuMI	RGGWCCY	1 cut(s)	281
PshBI	ATTAAT	1 cut(s)	75
Psp124BI	GAGCTC	1 cut(s)	248
Psp5II	RGGWCCY	1 cut(s)	281
Psp6I	CCWGG	1 cut(s)	113
PspGI	CCWGG	1 cut(s)	113
PspN4I	GGNNCC	2 cut(s)	282, 528
PspPI	GGNCC	2 cut(s)	90, 281
PspPPI	RGGWCCY	1 cut(s)	281
PstNI	CAGNNNCTG	1 cut(s)	536
PvuII	CAGCTG	1 cut(s)	533
RseI	CAYNNNNRTG	1 cut(s)	437
SacI	GAGCTC	1 cut(s)	248
SalI	GTCGAC	1 cut(s)	387
SapI	GCTCTTC	1 cut(s)	219
SaqAI	TTAA	3 cut(s)	75, 206, 297
SatI	GCNGC	6 cut(s)	42, 104, 504, 534, 537, 603
Sau3AI	GATC	3 cut(s)	69, 451, 649
Sau96I	GGNCC	2 cut(s)	90, 281
SchI	GAGTC	3 cut(s)	230, 377, 394
ScrFI	CCNGG	2 cut(s)	94, 115
SduI	GDGCHC	1 cut(s)	248
SfaNI	GCATC	3 cut(s)	53, 167, 437
SinI	GGWCC	2 cut(s)	90, 281
SmiMI	CAYNNNNRTG	1 cut(s)	437
Sse9I	AATT	4 cut(s)	291, 299, 350, 510
SspMI	CTAG	4 cut(s)	155, 396, 407, 667
SstI	GAGCTC	1 cut(s)	248
StyD4I	CCNGG	2 cut(s)	92, 113
StyI	CCWWGG	1 cut(s)	6
TaqI	TCGA	2 cut(s)	388, 585
TasI	AATT	4 cut(s)	291, 299, 350, 510
Tru1I	TTAA	3 cut(s)	75, 206, 297
Tru9I	TTAA	3 cut(s)	75, 206, 297
TscAI	CASTG	3 cut(s)	22, 113, 583
TseI	GCWGC	6 cut(s)	41, 103, 503, 533, 536, 602
TspDTI	ATGAA	3 cut(s)	246, 567, 576
TspRI	CASTG	3 cut(s)	22, 113, 583
VpaK11BI	GGWCC	2 cut(s)	90, 281
VspI	ATTAAT	1 cut(s)	75
XmiI	GTMKAC	1 cut(s)	388
XspI	CTAG	4 cut(s)	155, 396, 407, 667

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.