Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003029

Physical Location & Seq

Genomic Coordinates Forward (+)

985123 .. 991506

Gene Structure 6384 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G02260.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2655 bp

ATGACTTCTGCTTCTTCCATGTCCGTGTCTGTGGAATGTGTGAACATATGTAATCTAACGAAAGGAGATGGGAATGCAAGAAGCGATTGCAGTGCTCTCTCCTGTGCTTGGAAAGCTCCAAGAGCGTTAACTGGGTTTCTAGCTAGCACTGCTCATCCACCTGTGTGTTCTGTGTATTCATGTGGCAGAAATGGAAGAAAGAGCAGAATGAAAGCTTGCGCCTGGCAGAGGTATGAATATGAAGTAGGCTTTTCTGAGGCTCCTTACTTTGTAAATGTGAGAAATATCTTGAAGTCCAGATTATCTTGTGGTGGTCATAAAAGATGGGAACTGTATTGCGTATCAGCTGAATCTTCTTCTGGTGCATCCAGTGATGTTACCGTCGAAACATTGTGGGAGGACCTTTTCCCATCAATATCTTATCTACCCCGTAAAGAATTAGAATTTGTTCAAAAGGGCCTTAAGTTAGCGTTTGAGGCACATCATGGTCAAAAGAGACGTAGTGGGGAACCATTCATTATACATCCCGTTGCAGTTGCTCGTATCCTTGGGGAACTTGAATTGGATTGGGAGTCTATTGTTGCTGGATTACTACATGACACAGTCGAGGATACAAATTTCATTACTTTTGAAAAGATAGAAGAAGAGTTTGGTGCAACTGTGCGTCACATCGTAGAAGGGGAGACCAAGGTGTCAAAACTGGGAAAGTTAAAGTGTAAAACGGAAAGTGAAACAATACAAGATGTAAAAGCAGATGATTTGCGGCAGATGTTTCTGGCGATGACAGACGAGGTCCGCGTCATTATTGTCAAACTAGCTGACCGGTTGCATAATATGCGAACTCTCTGCCACATGCCTCCCCATAAGCAGTCCAGCATTGCAGGGGAGACTTTGCAGGTCTTTGCTCCTTTAGCAAAATTATTGGGAATGTATTCAATAAAGTCTGAACTGGAAAATCTGTCTTTCATGTACGTAAGTGCTGAGGATTATGATAGAGTCACTAGCAGGATTGCTAACCTCTACAAAGAGCATGAAAAAGAACTCACTGAGGCAAACAGAATTTTGGTGAAAAAGATTGAAGATGATCAGTTTCTGGACCTTGTGACTGTGAATACTGATGTTCGATCTGTTTGCAAGGAAACTTACAGCATCTACAAAGCTGCTCTCAAATCGAAAGGATCAATTAATGATTACAACCAGATTGCTCAGCAGTTACGGATTGTTGTAAAGCCAAAACCATCTGTAGGGGTCGGGCCTTTGTGCAGTCCACAACAGATATGCTATCACGTTCTGGGGCTTGTTCATGAGATCTGGAAACCTATTCCACGAACAGTAAAAGATTACATTGCAACCCCGAAGCCCAATGGATACCAGAGCCTCCATACTACTGTGATTCCATTCTTGTATGAGAGTATGTTTCGACTGGAGGTTCAGATCAGAACCGAGGAGATGGACTTGATTGCTGAAAGGGGCATTGCTGTTTACTACAATGGCAAGTCTCTATCTACTGGATTAGTTGGAAACGCGGTTCCTTTAGGTAGAAATTCAAGGGGGAAGACGGGTTGCCTCAACAATGCAGATTTTGCACTCAGGGTTGGGTGGCTAAATGCAATAAGGGAATGGCAAGAGGAGTTTGTGGGTAACATGAGCTCTAGAGAATTTGTGGATACCATTACGAGGGATCTTTTAGGTAGTCGTGTGTTTGTATTCACACCTAAAGGAGAGATAAAGAACCTCCCGAAAGGGGCCACCGTTGTTGACTACGCTTATCTGATTCACACCGAAATCGGAAACAAGATGGTAGCAGCAAAGGTCAATGGTAATCTTGTTTCCCCAACTCACGTTCTTGAGAATGCTGAGGTCGTGGAGATAGTCACCTACAACGCCCTCTCAAGTAAATCTGCTTTCCAAAGACATAAACAGTGGTTGCAACATGCCAAAACAAGGAGTGCAAGACACAAGATTATGAGGTTCCTAAGGGAGCAAGCTGCACAATGTGCTGCCGAAATTACCCAGGATCAAGTGAATGACTTTGTGGCGGACTCTGATAGTGATGTGGAAGATCTCACAGAAGATTCAAGAAAGAGCCTACAATGGTGGGAGAAAATCCTCGTCAATGTTAAGCAATTCCAGTCACAAGACAAAAGTAGAGATACAACACCCGCTCCTCAAAACGGAAGCGTTTGGGCCCCAAAGGTGAATGGAAAACACAACAAAGCCATAAAGAACTCGAGTTCTGATGAGCCAGAGTTCCTCCTACCTGGAGATGGAATTGCCAGGATTTTACCTGCTAATATCCCTGCTTATAAGGAAGTGTTGCCCGGCTTAGACAGTTGGCGAGACAGTAAAATTGCCACATGGCATCATCTCGAAGGTCAGTCCATCGAATGGTTATGTGTAGTATCCATGGATCGCAAAGGCATAATCGCAGAGGTTACAACAGTCCTCGCAGCTGAAGGCATTGCATTATGTTCTTGCGTGGCCGAGATTGACAGAGGAAGAGGATTAGCAGTAATGTTATTTCAAATAGAAGCAAACATTGAAAGTTTGGTTAGTGTTTGCGCTAAGGTGGATTTAGTCTTGGGTGTGTTGGGATGGTCCAGTGGTTGTAGCTGGCCAAGATCAACAGAGAATGCTCAAGTTCTTGAGTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008893 GO:0009507 GO:0009536 GO:0009611 GO:0009987 GO:0010150 GO:0015979 GO:0016787 GO:0016788 GO:0016794 GO:0032501 GO:0032502 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko00230 map00230

Pfam Domains

Protein Families

HD_4 RelA_SpoT TGS

Protein Analysis

884

Amino Acids

98.69

Weight (kDa)

6.65

Isoelectric Point (pI)

43.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HD_4	PF13328	154 - 310	5.1e-42	HD domain
HD	PF01966	173 - 279	3.3e-13	HD domain
RelA_SpoT	PF04607	379 - 493	3.5e-23	Region found in RelA / SpoT proteins
TGS	PF02824	566 - 625	3.5e-22	TGS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0003029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02260 AT4G02260 AT4G02260 AT4G02260
fragaria_vesca	FvH4_2g26030 FvH4_2g26030 FvH4_3g31250
malus_domestica	MD03G1291500.v1.1 MD11G1306700.v1.1
prunus_persica	Prupe.8G264600_v2.0.a1
pyrus_communis	pycom03g23090 pycom11g26840
rosa_chinensis	RchiOBHm_Chr6g0294391
rosa_laevigata	RLG00000011874
rosa_multiflora	Rmu_co8168868.1_g000001 Rmu_sc0000276.1_g000002 Rmu_sc0024449.1_g000001 Rmu_sc0030396.1_g000001
rosa_roxburghii	Rroxscaffold_4G00298810 Rroxscaffold_7G00173410
rosa_rugosa	Rorug04G0066700 Rorug04G0066800 Rorug04G0066900 Rorug04G0066900 Rorug04G0067000 Rorug04G0067100 Rorug06G0244100 Rorug06G0244200
rosa_samantha	Rh4AG095600 Rh6AG356700 Rh6BG363400 Rh6CG370700 Rh6DG357400 Rh7BG000400
rosa_wichuraiana	Rw4G020730 Rw6G017020 Rw6G031090 Rw7G015830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2307
AasI	GACNNNNNNGTC	1 cut(s)	691
Acc36I	ACCTGC	2 cut(s)	886, 2296
AccB7I	CCANNNNNTGG	1 cut(s)	2388
AccBSI	CCGCTC	1 cut(s)	2165
AccII	CGCG	2 cut(s)	798, 1526
AciI	CCGC	5 cut(s)	763, 796, 1526, 2039, 2163
AclWI	GGATC	4 cut(s)	1186, 1689, 2025, 2418
AcoI	YGGCCR	2 cut(s)	2481, 2615
AcsI	RAATTY	5 cut(s)	443, 616, 1059, 1543, 1658
AcuI	CTGAAG	1 cut(s)	2475
AdeI	CACNNNGTG	1 cut(s)	1997
AfaI	GTAC	1 cut(s)	971
AfiI	CCNNNNNNNGG	9 cut(s)	108, 228, 1244, 1677, 1744, 1944, 2174, 2267, 2388
AflII	CTTAAG	1 cut(s)	461
AgeI	ACCGGT	1 cut(s)	822
AjnI	CCWGG	4 cut(s)	221, 2013, 2260, 2276
AjuI	GAANNNNNNNTTGG	2 cut(s)	633, 665
AleI	CACNNNNGTG	1 cut(s)	163
AloI	GAACNNNNNNTCC	2 cut(s)	1512, 1544
Alw21I	GWGCWC	2 cut(s)	97, 1652
Alw26I	GTCTC	5 cut(s)	490, 677, 881, 1503, 2334
AlwI	GGATC	4 cut(s)	1186, 1689, 2025, 2418
AlwNI	CAGNNNCTG	1 cut(s)	1093
Ama87I	CYCGRG	1 cut(s)	2230
AoxI	GGCC	6 cut(s)	457, 1253, 1746, 2187, 2481, 2615
ApaI	GGGCCC	1 cut(s)	2191
ApeKI	GCWGC	5 cut(s)	1160, 1805, 1988, 2000, 2450
ApoI	RAATTY	5 cut(s)	443, 616, 1059, 1543, 1658
AseI	ATTAAT	1 cut(s)	1185
AsiGI	ACCGGT	1 cut(s)	822
Asp700I	GAANNNNTTC	2 cut(s)	447, 931
AspLEI	GCGC	2 cut(s)	221, 2564
AspS9I	GGNCC	9 cut(s)	400, 457, 793, 1096, 1253, 1746, 2187, 2188, 2598
AsuC2I	CCSGG	1 cut(s)	2322
AsuHPI	GGTGA	3 cut(s)	1078, 1867, 2209
AsuNHI	GCTAGC	1 cut(s)	143
AvaI	CYCGRG	1 cut(s)	2230
AvaII	GGWCC	4 cut(s)	400, 793, 1096, 2598
AxyI	CCTNAGG	1 cut(s)	1976
BaeGI	GKGCMC	1 cut(s)	2191
BalI	TGGCCA	1 cut(s)	2617
BanII	GRGCYC	2 cut(s)	1652, 2191
BbsI	GAAGAC	1 cut(s)	1562
Bbv12I	GWGCWC	2 cut(s)	97, 1652
BbvCI	CCTCAGC	2 cut(s)	981, 1857
BbvI	GCAGC	5 cut(s)	1147, 1817, 1975, 1987, 2462
BccI	CCATC	9 cut(s)	62, 318, 418, 1246, 1444, 1792, 2261, 2390, 2589
BcgI	CGANNNNNNTGC	6 cut(s)	74, 108, 828, 862, 1113, 1147
BciT130I	CCWGG	4 cut(s)	223, 2015, 2262, 2278
BciVI	GTATCC	5 cut(s)	554, 604, 1361, 1660, 2413
BclI	TGATCA	1 cut(s)	1084
BcnI	CCSGG	1 cut(s)	2322
BcoDI	GTCTC	5 cut(s)	490, 677, 881, 1503, 2334
BfaI	CTAG	5 cut(s)	140, 144, 815, 1002, 1653
BfmI	CTRYAG	1 cut(s)	1242
BfrI	CTTAAG	1 cut(s)	461
BfuAI	ACCTGC	2 cut(s)	886, 2296
BfuI	GTATCC	5 cut(s)	554, 604, 1361, 1660, 2413
BglII	AGATCT	2 cut(s)	1308, 2062
BisI	GCNGC	6 cut(s)	764, 1161, 1806, 1989, 2001, 2451
BlpI	GCTNAGC	1 cut(s)	1206
BlsI	GCNGC	6 cut(s)	765, 1162, 1807, 1990, 2002, 2452
Bme1390I	CCNGG	5 cut(s)	223, 2015, 2262, 2278, 2322
Bme18I	GGWCC	4 cut(s)	400, 793, 1096, 2598
BmeT110I	CYCGRG	1 cut(s)	2230
BmgT120I	GGNCC	9 cut(s)	400, 457, 793, 1096, 1253, 1746, 2187, 2188, 2598
BmiI	GGNNCC	7 cut(s)	261, 510, 1530, 1747, 1973, 2189, 2190
BmrFI	CCNGG	5 cut(s)	223, 2015, 2262, 2278, 2322
BmrI	ACTGGG	2 cut(s)	141, 710
BmsI	GCATC	3 cut(s)	374, 1158, 2371
BmtI	GCTAGC	1 cut(s)	147
BmuI	ACTGGG	2 cut(s)	141, 710
BpiI	GAAGAC	1 cut(s)	1562
BpmI	CTGGAG	2 cut(s)	1445, 2283
Bpu10I	CCTNAGC	3 cut(s)	981, 1857, 2565
Bpu1102I	GCTNAGC	1 cut(s)	1206
BpuEI	CTTGAG	3 cut(s)	1868, 1876, 2622
BpuMI	CCSGG	1 cut(s)	2322
BsaAI	YACGTR	1 cut(s)	973
BsaI	GGTCTC	1 cut(s)	677
BsaJI	CCNNGG	5 cut(s)	547, 687, 1443, 2013, 2406
BsaWI	WCCGGW	1 cut(s)	822
BsaXI	ACNNNNNCTCC	2 cut(s)	2149, 2179
Bsc4I	CCNNNNNNNGG	9 cut(s)	108, 228, 1244, 1677, 1744, 1944, 2174, 2267, 2388
Bse118I	RCCGGY	1 cut(s)	822
Bse1I	ACTGG	8 cut(s)	136, 369, 705, 954, 1428, 1513, 2131, 2601
Bse21I	CCTNAGG	1 cut(s)	1976
Bse3DI	GCAATG	4 cut(s)	876, 1344, 1473, 2460
BseBI	CCWGG	4 cut(s)	223, 2015, 2262, 2278
BseDI	CCNNGG	5 cut(s)	547, 687, 1443, 2013, 2406
BseGI	GGATG	4 cut(s)	154, 365, 523, 2600
BseLI	CCNNNNNNNGG	9 cut(s)	108, 228, 1244, 1677, 1744, 1944, 2174, 2267, 2388
BseMI	GCAATG	4 cut(s)	876, 1344, 1473, 2460
BseMII	CTCAG	6 cut(s)	246, 972, 1038, 1220, 1603, 1848
BseNI	ACTGG	8 cut(s)	136, 369, 705, 954, 1428, 1513, 2131, 2601
BseRI	GAGGAG	3 cut(s)	1460, 1643, 2157
BseSI	GKGCMC	1 cut(s)	2191
BseXI	GCAGC	5 cut(s)	1147, 1817, 1975, 1987, 2462
BsgI	GTGCAG	2 cut(s)	1282, 1974
Bsh1236I	CGCG	2 cut(s)	798, 1526
BshFI	GGCC	6 cut(s)	459, 1255, 1748, 2189, 2483, 2617
BshTI	ACCGGT	1 cut(s)	822
BsiHKAI	GWGCWC	2 cut(s)	97, 1652
BsiHKCI	CYCGRG	1 cut(s)	2230
BsiSI	CCGG	2 cut(s)	823, 2322
BslI	CCNNNNNNNGG	9 cut(s)	108, 228, 1244, 1677, 1744, 1944, 2174, 2267, 2388
BsmAI	GTCTC	5 cut(s)	490, 677, 881, 1503, 2334
BsmBI	CGTCTC	1 cut(s)	490
BsmI	GAATGC	3 cut(s)	79, 1858, 2638
BsnI	GGCC	6 cut(s)	459, 1255, 1748, 2189, 2483, 2617
Bso31I	GGTCTC	1 cut(s)	677
BsoBI	CYCGRG	1 cut(s)	2230
Bsp120I	GGGCCC	1 cut(s)	2187
Bsp1286I	GDGCHC	3 cut(s)	97, 1652, 2191
Bsp1720I	GCTNAGC	1 cut(s)	1206
Bsp19I	CCATGG	1 cut(s)	2406
BspACI	CCGC	5 cut(s)	763, 796, 1526, 2039, 2163
BspANI	GGCC	6 cut(s)	459, 1255, 1748, 2189, 2483, 2617
BspCNI	CTCAG	6 cut(s)	247, 973, 1039, 1219, 1602, 1849
BspFNI	CGCG	2 cut(s)	798, 1526
BspHI	TCATGA	1 cut(s)	1303
BspLI	GGNNCC	7 cut(s)	261, 510, 1530, 1747, 1973, 2189, 2190
BspMI	ACCTGC	2 cut(s)	886, 2296
BspOI	GCTAGC	1 cut(s)	147
BspPI	GGATC	4 cut(s)	1186, 1689, 2025, 2418
BspTI	CTTAAG	1 cut(s)	461
BspTNI	GGTCTC	1 cut(s)	677
BsrBI	CCGCTC	1 cut(s)	2165
BsrDI	GCAATG	4 cut(s)	876, 1344, 1473, 2460
BsrFI	RCCGGY	1 cut(s)	822
BsrI	ACTGG	8 cut(s)	136, 369, 705, 954, 1428, 1513, 2131, 2601
BssAI	RCCGGY	1 cut(s)	822
BssECI	CCNNGG	5 cut(s)	547, 687, 1443, 2013, 2406
BssT1I	CCWWGG	3 cut(s)	547, 687, 2406
Bst2UI	CCWGG	4 cut(s)	223, 2015, 2262, 2278
Bst6I	CTCTTC	2 cut(s)	639, 2494
BstAFI	CTTAAG	1 cut(s)	461
BstAPI	GCANNNNNTGC	3 cut(s)	835, 1583, 1997
BstBAI	YACGTR	1 cut(s)	973
BstC8I	GCNNGC	4 cut(s)	145, 217, 1986, 2615
BstDEI	CTNAG	9 cut(s)	255, 981, 1047, 1206, 1589, 1857, 1976, 2326, 2565
BstDSI	CCRYGG	1 cut(s)	2406
BstENI	CCTNNNNNAGG	1 cut(s)	226
BstF5I	GGATG	4 cut(s)	154, 365, 523, 2600
BstFNI	CGCG	2 cut(s)	798, 1526
BstHHI	GCGC	2 cut(s)	221, 2564
BstMAI	GTCTC	5 cut(s)	490, 677, 881, 1503, 2334
BstMWI	GCNNNNNNNGC	8 cut(s)	113, 122, 149, 476, 835, 911, 1583, 1997
BstNI	CCWGG	4 cut(s)	223, 2015, 2262, 2278
BstNSI	RCATGY	2 cut(s)	856, 1937
BstSCI	CCNGG	5 cut(s)	221, 2013, 2260, 2276, 2320
BstSFI	CTRYAG	1 cut(s)	1242
BstSLI	GKGCMC	1 cut(s)	2191
BstSNI	TACGTA	1 cut(s)	973
BstUI	CGCG	2 cut(s)	798, 1526
BstV1I	GCAGC	5 cut(s)	1147, 1817, 1975, 1987, 2462
BstV2I	GAAGAC	1 cut(s)	1562
BstX2I	RGATCY	3 cut(s)	1308, 1681, 2062
BstYI	RGATCY	3 cut(s)	1308, 1681, 2062
Bsu36I	CCTNAGG	1 cut(s)	1976
BsuI	GTATCC	5 cut(s)	554, 604, 1361, 1660, 2413
BsuRI	GGCC	6 cut(s)	459, 1255, 1748, 2189, 2483, 2617
BtgI	CCRYGG	1 cut(s)	2406
BtgZI	GCGATG	1 cut(s)	794
BtsCI	GGATG	4 cut(s)	154, 365, 523, 2600
BtsI	GCAGTG	2 cut(s)	97, 147
BtsIMutI	CAGTG	6 cut(s)	97, 147, 376, 1044, 1928, 2608
BveI	ACCTGC	2 cut(s)	886, 2296
Cac8I	GCNNGC	4 cut(s)	145, 217, 1986, 2615
CaiI	CAGNNNCTG	1 cut(s)	1093
CciI	TCATGA	1 cut(s)	1303
CfoI	GCGC	2 cut(s)	221, 2564
Cfr10I	RCCGGY	1 cut(s)	822
Cfr13I	GGNCC	9 cut(s)	400, 457, 793, 1096, 1253, 1746, 2187, 2188, 2598
CseI	GACGC	2 cut(s)	653, 787
Csp6I	GTAC	1 cut(s)	970
CspAI	ACCGGT	1 cut(s)	822
CspCI	CAANNNNNGTGG	2 cut(s)	1738, 1773
CviQI	GTAC	1 cut(s)	970
DdeI	CTNAG	9 cut(s)	255, 981, 1047, 1206, 1589, 1857, 1976, 2326, 2565
DraIII	CACNNNGTG	1 cut(s)	1997
DrdI	GACNNNNNNGTC	1 cut(s)	691
DseDI	GACNNNNNNGTC	1 cut(s)	691
EaeI	YGGCCR	2 cut(s)	2481, 2615
Eam1104I	CTCTTC	2 cut(s)	639, 2494
EarI	CTCTTC	2 cut(s)	639, 2494
EciI	GGCGGA	1 cut(s)	2054
Ecl136II	GAGCTC	1 cut(s)	1650
Eco105I	TACGTA	1 cut(s)	973
Eco130I	CCWWGG	3 cut(s)	547, 687, 2406
Eco24I	GRGCYC	2 cut(s)	1652, 2191
Eco31I	GGTCTC	1 cut(s)	677
Eco47I	GGWCC	4 cut(s)	400, 793, 1096, 2598
Eco53kI	GAGCTC	1 cut(s)	1650
Eco57I	CTGAAG	1 cut(s)	2475
Eco81I	CCTNAGG	1 cut(s)	1976
Eco88I	CYCGRG	1 cut(s)	2230
EcoICRI	GAGCTC	1 cut(s)	1650
EcoNI	CCTNNNNNAGG	1 cut(s)	226
EcoO109I	RGGNCCY	3 cut(s)	400, 457, 2188
EcoRII	CCWGG	4 cut(s)	221, 2013, 2260, 2276
EcoT14I	CCWWGG	3 cut(s)	547, 687, 2406
EcoT38I	GRGCYC	2 cut(s)	1652, 2191
ErhI	CCWWGG	3 cut(s)	547, 687, 2406
Esp3I	CGTCTC	1 cut(s)	490
FauI	CCCGC	1 cut(s)	2170
FauNDI	CATATG	1 cut(s)	47
FbaI	TGATCA	1 cut(s)	1084
Fnu4HI	GCNGC	6 cut(s)	764, 1161, 1806, 1989, 2001, 2451
FokI	GGATG	4 cut(s)	141, 352, 510, 2607
FriOI	GRGCYC	2 cut(s)	1652, 2191
Fsp4HI	GCNGC	6 cut(s)	764, 1161, 1806, 1989, 2001, 2451
FspBI	CTAG	5 cut(s)	140, 144, 815, 1002, 1653
GlaI	GCGC	2 cut(s)	220, 2563
GluI	GCNGC	6 cut(s)	764, 1161, 1806, 1989, 2001, 2451
GsuI	CTGGAG	2 cut(s)	1445, 2283
HaeIII	GGCC	6 cut(s)	459, 1255, 1748, 2189, 2483, 2617
HapII	CCGG	2 cut(s)	823, 2322
HgaI	GACGC	2 cut(s)	653, 787
HhaI	GCGC	2 cut(s)	221, 2564
Hin6I	GCGC	2 cut(s)	219, 2562
HinP1I	GCGC	2 cut(s)	219, 2562
HincII	GTYRAC	2 cut(s)	129, 1759
HindII	GTYRAC	2 cut(s)	129, 1759
HindIII	AAGCTT	1 cut(s)	213
HinfI	GANTC	7 cut(s)	350, 572, 996, 1393, 1774, 2042, 2075
HpaI	GTTAAC	1 cut(s)	129
HpaII	CCGG	2 cut(s)	823, 2322
HphI	GGTGA	3 cut(s)	1078, 1867, 2209
Hpy166II	GTNNAC	5 cut(s)	43, 129, 1268, 1483, 1759
Hpy188I	TCNGA	8 cut(s)	256, 946, 1434, 1439, 1773, 1790, 2047, 2239
Hpy8I	GTNNAC	5 cut(s)	43, 129, 1268, 1483, 1759
Hpy99I	CGWCG	1 cut(s)	386
HpyAV	CCTTC	3 cut(s)	671, 2366, 2450
HpyCH4IV	ACGT	4 cut(s)	499, 972, 1287, 1842
HpyF10VI	GCNNNNNNNGC	8 cut(s)	113, 122, 149, 476, 835, 911, 1583, 1997
HpyF3I	CTNAG	9 cut(s)	255, 981, 1047, 1206, 1589, 1857, 1976, 2326, 2565
HpySE526I	ACGT	4 cut(s)	499, 972, 1287, 1842
HspAI	GCGC	2 cut(s)	219, 2562
Ksp22I	TGATCA	1 cut(s)	1084
KspAI	GTTAAC	1 cut(s)	129
LmnI	GCTCC	5 cut(s)	121, 265, 910, 1981, 2170
Lsp1109I	GCAGC	5 cut(s)	1147, 1817, 1975, 1987, 2462
LweI	GCATC	3 cut(s)	374, 1158, 2371
MaeI	CTAG	5 cut(s)	140, 144, 815, 1002, 1653
MaeII	ACGT	4 cut(s)	499, 972, 1287, 1842
MaeIII	GTNAC	9 cut(s)	376, 665, 997, 1102, 1212, 1640, 1873, 2133, 2434
MbiI	CCGCTC	1 cut(s)	2165
MflI	RGATCY	3 cut(s)	1308, 1681, 2062
MhlI	GDGCHC	3 cut(s)	97, 1652, 2191
MlsI	TGGCCA	1 cut(s)	2617
MluNI	TGGCCA	1 cut(s)	2617
MlyI	GAGTC	3 cut(s)	581, 1005, 2036
MmeI	TCCRAC	1 cut(s)	1498
Mox20I	TGGCCA	1 cut(s)	2617
MroXI	GAANNNNTTC	2 cut(s)	447, 931
MscI	TGGCCA	1 cut(s)	2617
MseI	TTAA	6 cut(s)	128, 462, 710, 1185, 2121, 2653
MslI	CAYNNNNRTG	2 cut(s)	23, 163
Msp20I	TGGCCA	1 cut(s)	2617
MspA1I	CMGCKG	2 cut(s)	347, 2453
MspCI	CTTAAG	1 cut(s)	461
MspI	CCGG	2 cut(s)	823, 2322
MspR9I	CCNGG	5 cut(s)	223, 2015, 2262, 2278, 2322
Mva1269I	GAATGC	3 cut(s)	79, 1858, 2638
MvaI	CCWGG	4 cut(s)	223, 2015, 2262, 2278
MvnI	CGCG	2 cut(s)	798, 1526
MwoI	GCNNNNNNNGC	8 cut(s)	113, 122, 149, 476, 835, 911, 1583, 1997
NciI	CCSGG	1 cut(s)	2322
NcoI	CCATGG	1 cut(s)	2406
NdeI	CATATG	1 cut(s)	47
NheI	GCTAGC	1 cut(s)	143
NlaIV	GGNNCC	7 cut(s)	261, 510, 1530, 1747, 1973, 2189, 2190
NmeAIII	GCCGAG	1 cut(s)	2509
NmuCI	GTSAC	5 cut(s)	665, 997, 1102, 1873, 2133
NspI	RCATGY	2 cut(s)	856, 1937
OliI	CACNNNNGTG	1 cut(s)	163
PaeR7I	CTCGAG	1 cut(s)	2230
PagI	TCATGA	1 cut(s)	1303
PcsI	WCGNNNNNNNCGW	1 cut(s)	795
PctI	GAATGC	3 cut(s)	79, 1858, 2638
PdmI	GAANNNNTTC	2 cut(s)	447, 931
PfeI	GAWTC	4 cut(s)	350, 1393, 1774, 2075
PflFI	GACNNNGTC	2 cut(s)	602, 791
PflMI	CCANNNNNTGG	1 cut(s)	2388
PinAI	ACCGGT	1 cut(s)	822
PkrI	GCNGC	6 cut(s)	765, 1162, 1807, 1990, 2002, 2452
PleI	GAGTC	3 cut(s)	580, 1004, 2036
PpsI	GAGTC	3 cut(s)	580, 1004, 2036
Ppu21I	YACGTR	1 cut(s)	973
PpuMI	RGGWCCY	1 cut(s)	400
PshBI	ATTAAT	1 cut(s)	1185
PsiI	TTATAA	1 cut(s)	2307
Psp124BI	GAGCTC	1 cut(s)	1652
Psp5II	RGGWCCY	1 cut(s)	400
Psp6I	CCWGG	4 cut(s)	221, 2013, 2260, 2276
PspGI	CCWGG	4 cut(s)	221, 2013, 2260, 2276
PspN4I	GGNNCC	7 cut(s)	261, 510, 1530, 1747, 1973, 2189, 2190
PspOMI	GGGCCC	1 cut(s)	2187
PspPI	GGNCC	9 cut(s)	400, 457, 793, 1096, 1253, 1746, 2187, 2188, 2598
PspPPI	RGGWCCY	1 cut(s)	400
PspXI	VCTCGAGB	1 cut(s)	2230
PstNI	CAGNNNCTG	1 cut(s)	1093
PsuI	RGATCY	3 cut(s)	1308, 1681, 2062
PsyI	GACNNNGTC	2 cut(s)	602, 791
PvuII	CAGCTG	2 cut(s)	347, 2453
RsaI	GTAC	1 cut(s)	971
RsaNI	GTAC	1 cut(s)	970
RseI	CAYNNNNRTG	2 cut(s)	23, 163
SacI	GAGCTC	1 cut(s)	1652
SaqAI	TTAA	6 cut(s)	128, 462, 710, 1185, 2121, 2653
SatI	GCNGC	6 cut(s)	764, 1161, 1806, 1989, 2001, 2451
Sau96I	GGNCC	9 cut(s)	400, 457, 793, 1096, 1253, 1746, 2187, 2188, 2598
SchI	GAGTC	3 cut(s)	581, 1005, 2036
ScrFI	CCNGG	5 cut(s)	223, 2015, 2262, 2278, 2322
SduI	GDGCHC	3 cut(s)	97, 1652, 2191
SfaNI	GCATC	3 cut(s)	374, 1158, 2371
SfcI	CTRYAG	1 cut(s)	1242
Sfr274I	CTCGAG	1 cut(s)	2230
SinI	GGWCC	4 cut(s)	400, 793, 1096, 2598
SlaI	CTCGAG	1 cut(s)	2230
SmiMI	CAYNNNNRTG	2 cut(s)	23, 163
SmlI	CTYRAG	6 cut(s)	461, 1847, 1891, 2230, 2637, 2645
SmoI	CTYRAG	6 cut(s)	461, 1847, 1891, 2230, 2637, 2645
SnaBI	TACGTA	1 cut(s)	973
SsiI	CCGC	5 cut(s)	763, 796, 1526, 2039, 2163
SspMI	CTAG	5 cut(s)	140, 144, 815, 1002, 1653
SstI	GAGCTC	1 cut(s)	1652
StyD4I	CCNGG	5 cut(s)	221, 2013, 2260, 2276, 2320
StyI	CCWWGG	3 cut(s)	547, 687, 2406
TaiI	ACGT	4 cut(s)	502, 975, 1290, 1845
TaqI	TCGA	8 cut(s)	384, 606, 1123, 1172, 1420, 2231, 2370, 2385
TauI	GCSGC	1 cut(s)	766
TfiI	GAWTC	4 cut(s)	350, 1393, 1774, 2075
Tru1I	TTAA	6 cut(s)	128, 462, 710, 1185, 2121, 2653
Tru9I	TTAA	6 cut(s)	128, 462, 710, 1185, 2121, 2653
TscAI	CASTG	6 cut(s)	97, 154, 376, 1051, 1928, 2608
TseFI	GTSAC	5 cut(s)	665, 997, 1102, 1873, 2133
TseI	GCWGC	5 cut(s)	1160, 1805, 1988, 2000, 2450
Tsp45I	GTSAC	5 cut(s)	665, 997, 1102, 1873, 2133
TspDTI	ATGAA	9 cut(s)	168, 224, 249, 255, 505, 610, 955, 1047, 1292
TspGWI	ACGGA	4 cut(s)	13, 737, 1231, 2190
TspRI	CASTG	6 cut(s)	97, 154, 376, 1051, 1928, 2608
Tth111I	GACNNNGTC	2 cut(s)	602, 791
Van91I	CCANNNNNTGG	1 cut(s)	2388
Vha464I	CTTAAG	1 cut(s)	461
VpaK11BI	GGWCC	4 cut(s)	400, 793, 1096, 2598
VspI	ATTAAT	1 cut(s)	1185
XagI	CCTNNNNNAGG	1 cut(s)	226
XapI	RAATTY	5 cut(s)	443, 616, 1059, 1543, 1658
XbaI	TCTAGA	1 cut(s)	1652
XceI	RCATGY	2 cut(s)	856, 1937
XhoI	CTCGAG	1 cut(s)	2230
XmnI	GAANNNNTTC	2 cut(s)	447, 931
XspI	CTAG	5 cut(s)	140, 144, 815, 1002, 1653

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.