Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0003029

Physical Location & Seq

Genomic Coordinates Forward (+)

34637 .. 44953

Gene Structure 10317 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG000400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGATATCAAAGTATCAAACTATCTGCTCACCTGCGAACCATACAAATCAAGCAAATTGAAACTTGAAGGGGGGATGAATTATCTGCATGAGCATAAACCTGAAGCAATAATTCATCGAGATCTTGAGCCCTCAAATATATTGCGGGATGATTCTGGGCATCTGAAAGTTGCAGACTTTGGGGTTTCAAAGTTGGGAAAGTTGAAATGTAGGGATGAACATGATTCTGTACAAGATGTAAAAGCAGATGACCTACGGCAGATGCTTCTAGCCATGACAGAGGAGGTCCGGGTTATCATTGTCAAGTTAGCTGACAGATTACATAACATGCGCACTCTTTCACACATGCCTCCACATAAGCAGTCCAGCATTGCAAGGGAGACATTGCAGGTCTTTGCTCCTCTAGCAAAGTTGCTTGGGATGTACCAAATCAAGCTTCGTATTGTTATCAAACCAAAGCCATGCCTTGGCGGAGGCCTTCTGTGCACCCCACAGCAGATTTGCTACCATGTTCTTGGGTTGGTTCATGGAATCTGGACCCCTATTCCTCGAACTGCGAGTTTATGTCTTCTATTACTCTTAAAAGATACACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008893 GO:0009507 GO:0009536 GO:0009611 GO:0009987 GO:0010150 GO:0015979 GO:0016787 GO:0016788 GO:0016794 GO:0032501 GO:0032502 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko00230 map00230

Pfam Domains

Protein Families

HD_4 RelA_SpoT TGS

Protein Analysis

198

Amino Acids

22.36

Weight (kDa)

9.0

Isoelectric Point (pI)

34.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	20 - 66	2.4e-11	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	24 - 66	1e-07	Protein tyrosine and serine/threonine kinase
HD_4	PF13328	63 - 141	2.9e-22	HD domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02260 AT4G02260 AT4G02260 AT4G02260
fragaria_vesca	FvH4_2g26030 FvH4_2g26030 FvH4_3g31250
malus_domestica	MD03G1291500.v1.1 MD11G1306700.v1.1
prunus_persica	Prupe.8G264600_v2.0.a1
pyrus_communis	pycom03g23090 pycom11g26840
rosa_chinensis	RchiOBHm_Chr6g0294391
rosa_laevigata	RLG00000011874
rosa_multiflora	Rmu_co8168868.1_g000001 Rmu_sc0000276.1_g000002 Rmu_sc0024449.1_g000001 Rmu_sc0030396.1_g000001
rosa_roxburghii	Rroxscaffold_4G00298810 Rroxscaffold_7G00173410
rosa_rugosa	Rorug04G0066700 Rorug04G0066800 Rorug04G0066900 Rorug04G0066900 Rorug04G0067000 Rorug04G0067100 Rorug06G0244100 Rorug06G0244200
rosa_samantha	Rh4AG095600 Rh6AG356700 Rh6BG363400 Rh6CG370700 Rh6DG357400 Rh7BG000400
rosa_wichuraiana	Rw4G020730 Rw6G017020 Rw6G031090 Rw7G015830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	41
Acc16I	TGCGCA	1 cut(s)	332
Acc36I	ACCTGC	2 cut(s)	41, 379
AccB7I	CCANNNNNTGG	1 cut(s)	467
AciI	CCGC	2 cut(s)	145, 471
AcuI	CTGAAG	1 cut(s)	123
AfaI	GTAC	2 cut(s)	231, 425
AfiI	CCNNNNNNNGG	1 cut(s)	467
AgsI	TTSAA	4 cut(s)	61, 68, 189, 205
AjuI	GAANNNNNNNTTGG	2 cut(s)	420, 452
AluBI	AGCT	2 cut(s)	311, 436
AluI	AGCT	2 cut(s)	311, 436
Alw21I	GWGCWC	1 cut(s)	488
Alw26I	GTCTC	1 cut(s)	374
Alw44I	GTGCAC	1 cut(s)	484
AoxI	GGCC	1 cut(s)	475
ApaLI	GTGCAC	1 cut(s)	484
AspLEI	GCGC	1 cut(s)	333
AspS9I	GGNCC	2 cut(s)	286, 537
AsuC2I	CCSGG	1 cut(s)	290
AsuHPI	GGTGA	1 cut(s)	22
AvaII	GGWCC	2 cut(s)	286, 537
BaeGI	GKGCMC	1 cut(s)	488
BanII	GRGCYC	1 cut(s)	132
BbsI	GAAGAC	1 cut(s)	560
Bbv12I	GWGCWC	1 cut(s)	488
BceAI	ACGGC	1 cut(s)	272
BcnI	CCSGG	1 cut(s)	290
BcoDI	GTCTC	1 cut(s)	374
BfaI	CTAG	2 cut(s)	269, 404
BfuAI	ACCTGC	2 cut(s)	41, 379
BglII	AGATCT	1 cut(s)	121
Bme1390I	CCNGG	1 cut(s)	290
Bme18I	GGWCC	2 cut(s)	286, 537
BmgT120I	GGNCC	2 cut(s)	286, 537
BmiI	GGNNCC	1 cut(s)	539
BmrFI	CCNGG	1 cut(s)	290
BmsI	GCATC	2 cut(s)	169, 252
BpiI	GAAGAC	1 cut(s)	560
BpuEI	CTTGAG	1 cut(s)	146
BpuMI	CCSGG	1 cut(s)	290
BsaJI	CCNNGG	1 cut(s)	466
Bsc4I	CCNNNNNNNGG	1 cut(s)	467
Bse3DI	GCAATG	2 cut(s)	369, 383
BseDI	CCNNGG	1 cut(s)	466
BseGI	GGATG	4 cut(s)	81, 154, 220, 426
BseLI	CCNNNNNNNGG	1 cut(s)	467
BseMI	GCAATG	2 cut(s)	369, 383
BseRI	GAGGAG	2 cut(s)	296, 390
BseSI	GKGCMC	1 cut(s)	488
BshFI	GGCC	1 cut(s)	477
BsiHKAI	GWGCWC	1 cut(s)	488
BsiSI	CCGG	1 cut(s)	289
BslI	CCNNNNNNNGG	1 cut(s)	467
BsmAI	GTCTC	1 cut(s)	374
BsnI	GGCC	1 cut(s)	477
Bsp1286I	GDGCHC	2 cut(s)	132, 488
Bsp1407I	TGTACA	1 cut(s)	229
Bsp143I	GATC	1 cut(s)	121
BspACI	CCGC	2 cut(s)	145, 471
BspANI	GGCC	1 cut(s)	477
BspLI	GGNNCC	1 cut(s)	539
BspMI	ACCTGC	2 cut(s)	41, 379
BsrDI	GCAATG	2 cut(s)	369, 383
BsrGI	TGTACA	1 cut(s)	229
BssECI	CCNNGG	1 cut(s)	466
BssMI	GATC	1 cut(s)	121
BssT1I	CCWWGG	1 cut(s)	466
BstAUI	TGTACA	1 cut(s)	229
BstF5I	GGATG	4 cut(s)	81, 154, 220, 426
BstHHI	GCGC	1 cut(s)	333
BstKTI	GATC	1 cut(s)	124
BstMAI	GTCTC	1 cut(s)	374
BstMBI	GATC	1 cut(s)	121
BstMWI	GCNNNNNNNGC	2 cut(s)	404, 483
BstNSI	RCATGY	2 cut(s)	331, 349
BstSCI	CCNGG	1 cut(s)	288
BstSLI	GKGCMC	1 cut(s)	488
BstV2I	GAAGAC	1 cut(s)	560
BstX2I	RGATCY	1 cut(s)	121
BstXI	CCANNNNNNTGG	1 cut(s)	515
BstYI	RGATCY	1 cut(s)	121
BsuRI	GGCC	1 cut(s)	477
BtsCI	GGATG	4 cut(s)	81, 154, 220, 426
BveI	ACCTGC	2 cut(s)	41, 379
CfoI	GCGC	1 cut(s)	333
Cfr13I	GGNCC	2 cut(s)	286, 537
Csp6I	GTAC	2 cut(s)	230, 424
CviAII	CATG	8 cut(s)	89, 221, 274, 328, 346, 462, 509, 527
CviJI	RGCY	6 cut(s)	130, 272, 311, 436, 460, 477
CviKI_1	RGCY	6 cut(s)	130, 272, 311, 436, 460, 477
CviQI	GTAC	2 cut(s)	230, 424
DpnI	GATC	1 cut(s)	123
DpnII	GATC	1 cut(s)	121
EciI	GGCGGA	1 cut(s)	486
Eco130I	CCWWGG	1 cut(s)	466
Eco147I	AGGCCT	1 cut(s)	477
Eco24I	GRGCYC	1 cut(s)	132
Eco32I	GATATC	1 cut(s)	7
Eco47I	GGWCC	2 cut(s)	286, 537
Eco57I	CTGAAG	1 cut(s)	123
EcoRV	GATATC	1 cut(s)	7
EcoT14I	CCWWGG	1 cut(s)	466
EcoT38I	GRGCYC	1 cut(s)	132
ErhI	CCWWGG	1 cut(s)	466
FaeI	CATG	8 cut(s)	92, 224, 277, 331, 349, 465, 512, 530
FalI	AAGNNNNNCTT	1 cut(s)	576
FatI	CATG	8 cut(s)	88, 220, 273, 327, 345, 461, 508, 526
FauI	CCCGC	1 cut(s)	138
FokI	GGATG	4 cut(s)	88, 161, 227, 433
FriOI	GRGCYC	1 cut(s)	132
FspAI	RTGCGCAY	1 cut(s)	332
FspBI	CTAG	2 cut(s)	269, 404
FspI	TGCGCA	1 cut(s)	332
GlaI	GCGC	1 cut(s)	332
HaeIII	GGCC	1 cut(s)	477
HapII	CCGG	1 cut(s)	289
HhaI	GCGC	1 cut(s)	333
Hin1II	CATG	8 cut(s)	92, 224, 277, 331, 349, 465, 512, 530
Hin6I	GCGC	1 cut(s)	331
HinP1I	GCGC	1 cut(s)	331
HindIII	AAGCTT	1 cut(s)	434
HinfI	GANTC	3 cut(s)	152, 224, 531
HpaII	CCGG	1 cut(s)	289
HphI	GGTGA	1 cut(s)	22
Hpy166II	GTNNAC	1 cut(s)	486
Hpy188I	TCNGA	1 cut(s)	165
Hpy188III	TCNNGA	3 cut(s)	119, 125, 535
Hpy8I	GTNNAC	1 cut(s)	486
HpyAV	CCTTC	2 cut(s)	62, 488
HpyCH4V	TGCA	5 cut(s)	88, 173, 374, 388, 486
HpyF10VI	GCNNNNNNNGC	2 cut(s)	404, 483
Hsp92II	CATG	8 cut(s)	92, 224, 277, 331, 349, 465, 512, 530
HspAI	GCGC	1 cut(s)	331
Kzo9I	GATC	1 cut(s)	121
LmnI	GCTCC	1 cut(s)	403
LpnPI	CCDG	7 cut(s)	46, 114, 141, 302, 374, 379, 520
LweI	GCATC	2 cut(s)	169, 252
MaeI	CTAG	2 cut(s)	269, 404
MalI	GATC	1 cut(s)	123
MboI	GATC	1 cut(s)	121
MboII	GAAGA	1 cut(s)	560
MflI	RGATCY	1 cut(s)	121
MhlI	GDGCHC	2 cut(s)	132, 488
MluCI	AATT	3 cut(s)	56, 79, 111
MnlI	CCTC	7 cut(s)	142, 274, 277, 360, 411, 467, 558
MseI	TTAA	2 cut(s)	581, 595
MspI	CCGG	1 cut(s)	289
MspR9I	CCNGG	1 cut(s)	290
MwoI	GCNNNNNNNGC	2 cut(s)	404, 483
NciI	CCSGG	1 cut(s)	290
NdeII	GATC	1 cut(s)	121
NlaIII	CATG	8 cut(s)	92, 224, 277, 331, 349, 465, 512, 530
NlaIV	GGNNCC	1 cut(s)	539
NsbI	TGCGCA	1 cut(s)	332
NspI	RCATGY	2 cut(s)	331, 349
PaqCI	CACCTGC	1 cut(s)	41
PceI	AGGCCT	1 cut(s)	477
PfeI	GAWTC	3 cut(s)	152, 224, 531
PflMI	CCANNNNNTGG	1 cut(s)	467
PspN4I	GGNNCC	1 cut(s)	539
PspPI	GGNCC	2 cut(s)	286, 537
PsuI	RGATCY	1 cut(s)	121
RsaI	GTAC	2 cut(s)	231, 425
RsaNI	GTAC	2 cut(s)	230, 424
SaqAI	TTAA	2 cut(s)	581, 595
Sau3AI	GATC	1 cut(s)	121
Sau96I	GGNCC	2 cut(s)	286, 537
ScrFI	CCNGG	1 cut(s)	290
SduI	GDGCHC	2 cut(s)	132, 488
SetI	ASST	7 cut(s)	35, 103, 255, 288, 313, 393, 438
SfaNI	GCATC	2 cut(s)	169, 252
SinI	GGWCC	2 cut(s)	286, 537
SmlI	CTYRAG	1 cut(s)	125
SmoI	CTYRAG	1 cut(s)	125
Sse9I	AATT	3 cut(s)	56, 79, 111
SseBI	AGGCCT	1 cut(s)	477
SsiI	CCGC	2 cut(s)	145, 471
SspMI	CTAG	2 cut(s)	269, 404
StuI	AGGCCT	1 cut(s)	477
StyD4I	CCNGG	1 cut(s)	288
StyI	CCWWGG	1 cut(s)	466
TaqI	TCGA	2 cut(s)	118, 550
TasI	AATT	3 cut(s)	56, 79, 111
TatI	WGTACW	1 cut(s)	229
TfiI	GAWTC	3 cut(s)	152, 224, 531
Tru1I	TTAA	2 cut(s)	581, 595
Tru9I	TTAA	2 cut(s)	581, 595
TspDTI	ATGAA	4 cut(s)	92, 104, 231, 515
Van91I	CCANNNNNTGG	1 cut(s)	467
VneI	GTGCAC	1 cut(s)	484
VpaK11BI	GGWCC	2 cut(s)	286, 537
XceI	RCATGY	2 cut(s)	331, 349
XspI	CTAG	2 cut(s)	269, 404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.