Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0003029

Physical Location & Seq

Genomic Coordinates Forward (+)

55568476 .. 55576287

Gene Structure 7812 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG357400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1701 bp

ATGTACACAAATCCTGAAGATTATGCAAAGATCAGGAGAAAAGTGGCAGACCTCTACAAAGAGCATGAGAAAGAACTTGTAGAGGCCAACAAAATTTTGGTGAAGAAGATTGAGGATGACCAGTTCTTAGAACTTATGACTGTGAAAACTGAAGTTCGTGCTGTATGCAAGGAACCATACAGTATCTATAAATCTGTTCTCAAATCTAAAGGTTCAATTAATGAGGTCAATCAAATAGCACAGCTTCGTATTGTTATCAAACCAAAGCCATGCCTTGGCGGAGGGCCTCTGTGCACCCCACAGCAGATTTGCTACCATGTTCTTGGGTTGGTTCATGGAATCTGGACCCCTATTCCTCGAACTATGAAAGACTATATTGCCACCCCCAAACCTAATGGCTATCAGAGTCTCCAGACAACTGTAATTCCTTTCTTGTATGAGAGCATGTTGCGGCTTGAAGTGCAGATAAGGACAGAAGAGATGGACCTGATAGCCCAAAGAGGCATTGCTTCCCATTATAGCGGGAGAGGATTTGTTACTGGTTTAGTTGGACGCACAATCCCTAGTGGTAGAAGTTCAAGAGGGAAGACTGTCTGCCTTAACAATGCAAACATTGCACTCAGAATTGGCTGGCTCAATGCAATTAGAGAATGGCAAGAGGAGTTCGTTGGCAACATGAGCTCTAGGGAATTTGTAGAAACTATCACTAGAGATCTATTAGGTAGTCGTGTGTTTGTGTTTACTCCAAGGGGAGAGATAAAAAATCTTCCAAAAGGAGCGACTGTTATTGACTACGCCTATATGATACACACTGAAATTGGCAACAAAATGGTAGCAGCAAAGGTGAACGGTAATCTTGTTTCTCCTATGCATGTACTTGCAAATGCGGAAGTTGTGGAGATAGTCACTTACAATTCACTGACCGGAAAATCAGCTTTTCAGAGGCATAAGCAGTGGTTGCAACATGCAAAAACACGCAGTGCCCGACACAAAATAATGAAATTCTTAAGGGAGCAAGCTGCCCTATCTGCTGATGAAATAACAGCAGATAAAGTAAATGACTTCGTTGCTGATTCTGAAGAAGAGAGTGAAGCAGAAGAGCTCTCCAGTACCTCCAAAGGATACAAAGCTTTGTGGGAGAAAATGCTGGTGAATGTTGTAGGATTGGCATTGCCAGAACGAAGTTCCGAAGATCCCTTCCAAATTACCAATGGAAATGCTCGGGTTTCTGCTCCCAAGGTGAACGGGAAACATAACAAACATGTTCGACATGTGAGTTTGAAGGCTGAGGGGGAGTTGTTGTCGCAAGGAAATGGTGTTGCTAGAATGTTGCAAGCTAATATTCCTATGTACAAGGAAGCCTTGCCCAGTTTAGAAAGTTGGCAAGCCAGCAAGATTACCTCTTGGCATAATGTTGAAGGGCACTCCATCCTTTGGTTTTCCGTGGTTTCCATCGATCGAAAAGGTATGATCGCTGAGGTCACAACAGCAATGGCAGCTGCAGGCATTACTATTTGTTCTTGTGTGGCTGAGATCGATGGGGAAAGGGGGATCGCTGTCATGTTATTTCACGTTGAAGGGAGCGTGGAAAGTTTGGCTAATGCTTGCTCGAGCATTGATATAATTCTAGGTGTTTTGGGATGGTCGATGGGTTGCAGCTGGCCCAGCTTAATGGATAAGCCCCGATTACTTGAATGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008893 GO:0009507 GO:0009536 GO:0009611 GO:0009987 GO:0010150 GO:0015979 GO:0016787 GO:0016788 GO:0016794 GO:0032501 GO:0032502 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko00230 map00230

Pfam Domains

Protein Families

HD_4 RelA_SpoT TGS

Protein Analysis

566

Amino Acids

62.95

Weight (kDa)

8.51

Isoelectric Point (pI)

42.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RelA_SpoT	PF04607	57 - 173	8.3e-23	Region found in RelA / SpoT proteins
TGS	PF02824	244 - 303	2.7e-21	TGS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02260 AT4G02260 AT4G02260 AT4G02260
fragaria_vesca	FvH4_2g26030 FvH4_2g26030 FvH4_3g31250
malus_domestica	MD03G1291500.v1.1 MD11G1306700.v1.1
prunus_persica	Prupe.8G264600_v2.0.a1
pyrus_communis	pycom03g23090 pycom11g26840
rosa_chinensis	RchiOBHm_Chr6g0294391
rosa_laevigata	RLG00000011874
rosa_multiflora	Rmu_co8168868.1_g000001 Rmu_sc0000276.1_g000002 Rmu_sc0024449.1_g000001 Rmu_sc0030396.1_g000001
rosa_roxburghii	Rroxscaffold_4G00298810 Rroxscaffold_7G00173410
rosa_rugosa	Rorug04G0066700 Rorug04G0066800 Rorug04G0066900 Rorug04G0066900 Rorug04G0067000 Rorug04G0067100 Rorug06G0244100 Rorug06G0244200
rosa_samantha	Rh4AG095600 Rh6AG356700 Rh6BG363400 Rh6CG370700 Rh6DG357400 Rh7BG000400
rosa_wichuraiana	Rw4G020730 Rw6G017020 Rw6G031090 Rw7G015830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	275, 1434
AciI	CCGC	4 cut(s)	279, 451, 522, 887
AclWI	GGATC	2 cut(s)	1187, 1559
AcsI	RAATTY	3 cut(s)	93, 689, 1001
AcuI	CTGAAG	3 cut(s)	36, 171, 1098
AdeI	CACNNNGTG	1 cut(s)	980
AfaI	GTAC	4 cut(s)	5, 876, 1111, 1352
AfiI	CCNNNNNNNGG	2 cut(s)	275, 1434
AflII	CTTAAG	1 cut(s)	1006
AflIII	ACRYGT	2 cut(s)	1261, 1270
AgsI	TTSAA	7 cut(s)	216, 458, 579, 1282, 1418, 1577, 1694
AloI	GAACNNNNNNTCC	2 cut(s)	107, 139
Alw21I	GWGCWC	3 cut(s)	296, 683, 1104
Alw26I	GTCTC	1 cut(s)	413
Alw44I	GTGCAC	1 cut(s)	292
AlwI	GGATC	2 cut(s)	1187, 1559
Ama87I	CYCGRG	2 cut(s)	1221, 1609
AoxI	GGCC	3 cut(s)	84, 284, 1661
ApaLI	GTGCAC	1 cut(s)	292
ApeKI	GCWGC	5 cut(s)	836, 1019, 1496, 1499, 1656
ApoI	RAATTY	3 cut(s)	93, 689, 1001
AseI	ATTAAT	1 cut(s)	219
AspS9I	GGNCC	4 cut(s)	284, 345, 484, 1662
AsuHPI	GGTGA	4 cut(s)	112, 856, 1162, 1252
AvaI	CYCGRG	2 cut(s)	1221, 1609
AvaII	GGWCC	2 cut(s)	345, 484
BaeGI	GKGCMC	3 cut(s)	296, 985, 1425
BanII	GRGCYC	2 cut(s)	683, 1104
BbsI	GAAGAC	1 cut(s)	593
Bbv12I	GWGCWC	3 cut(s)	296, 683, 1104
BbvCI	CCTCAGC	2 cut(s)	1287, 1476
BbvI	GCAGC	5 cut(s)	848, 1006, 1486, 1508, 1668
BccI	CCATC	6 cut(s)	475, 1436, 1460, 1532, 1635, 1642
BciVI	GTATCC	1 cut(s)	1115
BcoDI	GTCTC	1 cut(s)	413
BfaI	CTAG	5 cut(s)	564, 684, 708, 1323, 1628
BfmI	CTRYAG	1 cut(s)	1500
BfrI	CTTAAG	1 cut(s)	1006
BfuI	GTATCC	1 cut(s)	1115
BglII	AGATCT	1 cut(s)	712
BisI	GCNGC	6 cut(s)	452, 837, 1020, 1497, 1500, 1657
BlsI	GCNGC	6 cut(s)	453, 838, 1021, 1498, 1501, 1658
Bme18I	GGWCC	2 cut(s)	345, 484
BmeT110I	CYCGRG	2 cut(s)	1221, 1609
BmgT120I	GGNCC	4 cut(s)	284, 345, 484, 1662
BmiI	GGNNCC	2 cut(s)	174, 347
BmrI	ACTGGG	1 cut(s)	1362
BmuI	ACTGGG	1 cut(s)	1362
BpiI	GAAGAC	1 cut(s)	593
BpmI	CTGGAG	2 cut(s)	395, 1090
Bpu10I	CCTNAGC	2 cut(s)	1287, 1476
Bsa29I	ATCGAT	2 cut(s)	1455, 1536
BsaJI	CCNNGG	4 cut(s)	274, 746, 1236, 1443
BsaWI	WCCGGW	1 cut(s)	923
BsaXI	ACNNNNNCTCC	4 cut(s)	768, 798, 1286, 1316
Bsc4I	CCNNNNNNNGG	2 cut(s)	275, 1434
Bse1I	ACTGG	4 cut(s)	121, 544, 1107, 1368
Bse3DI	GCAATG	4 cut(s)	504, 612, 1169, 1497
BseCI	ATCGAT	2 cut(s)	1455, 1536
BseDI	CCNNGG	4 cut(s)	274, 746, 1236, 1443
BseGI	GGATG	3 cut(s)	121, 1428, 1646
BseLI	CCNNNNNNNGG	2 cut(s)	275, 1434
BseMI	GCAATG	4 cut(s)	504, 612, 1169, 1497
BseMII	CTCAG	4 cut(s)	634, 1278, 1467, 1521
BseNI	ACTGG	4 cut(s)	121, 544, 1107, 1368
BseRI	GAGGAG	1 cut(s)	674
BseSI	GKGCMC	3 cut(s)	296, 985, 1425
BseXI	GCAGC	5 cut(s)	848, 1006, 1486, 1508, 1668
BseYI	CCCAGC	1 cut(s)	1664
BsgI	GTGCAG	1 cut(s)	482
Bsh1285I	CGRYCG	1 cut(s)	1459
BshFI	GGCC	3 cut(s)	86, 286, 1663
BshVI	ATCGAT	2 cut(s)	1455, 1536
BsiEI	CGRYCG	1 cut(s)	1459
BsiHKAI	GWGCWC	3 cut(s)	296, 683, 1104
BsiHKCI	CYCGRG	2 cut(s)	1221, 1609
BsiSI	CCGG	1 cut(s)	924
BslI	CCNNNNNNNGG	2 cut(s)	275, 1434
BsmAI	GTCTC	1 cut(s)	413
BsmI	GAATGC	1 cut(s)	1700
BsnI	GGCC	3 cut(s)	86, 286, 1663
BsoBI	CYCGRG	2 cut(s)	1221, 1609
Bsp1286I	GDGCHC	5 cut(s)	296, 683, 985, 1104, 1425
Bsp1407I	TGTACA	2 cut(s)	3, 1350
Bsp143I	GATC	7 cut(s)	30, 712, 1192, 1456, 1470, 1533, 1551
BspACI	CCGC	4 cut(s)	279, 451, 522, 887
BspANI	GGCC	3 cut(s)	86, 286, 1663
BspCNI	CTCAG	4 cut(s)	633, 1279, 1468, 1522
BspDI	ATCGAT	2 cut(s)	1455, 1536
BspLI	GGNNCC	2 cut(s)	174, 347
BspMAI	CTGCAG	1 cut(s)	1504
BspPI	GGATC	2 cut(s)	1187, 1559
BspQI	GCTCTTC	1 cut(s)	1092
BspTI	CTTAAG	1 cut(s)	1006
BsrDI	GCAATG	4 cut(s)	504, 612, 1169, 1497
BsrGI	TGTACA	2 cut(s)	3, 1350
BsrI	ACTGG	4 cut(s)	121, 544, 1107, 1368
BssECI	CCNNGG	4 cut(s)	274, 746, 1236, 1443
BssMI	GATC	7 cut(s)	30, 712, 1192, 1456, 1470, 1533, 1551
BssT1I	CCWWGG	3 cut(s)	274, 746, 1236
Bst4CI	ACNGT	6 cut(s)	142, 182, 421, 592, 784, 851
Bst6I	CTCTTC	3 cut(s)	471, 1077, 1092
BstAFI	CTTAAG	1 cut(s)	1006
BstAPI	GCANNNNNTGC	2 cut(s)	614, 958
BstAUI	TGTACA	2 cut(s)	3, 1350
BstC8I	GCNNGC	8 cut(s)	632, 1017, 1335, 1386, 1390, 1504, 1606, 1661
BstDEI	CTNAG	5 cut(s)	127, 620, 1287, 1476, 1530
BstDSI	CCRYGG	1 cut(s)	1443
BstF5I	GGATG	3 cut(s)	121, 1428, 1646
BstKTI	GATC	7 cut(s)	33, 715, 1195, 1459, 1473, 1536, 1554
BstMAI	GTCTC	1 cut(s)	413
BstMBI	GATC	7 cut(s)	30, 712, 1192, 1456, 1470, 1533, 1551
BstMCI	CGRYCG	1 cut(s)	1459
BstMWI	GCNNNNNNNGC	7 cut(s)	460, 614, 678, 958, 1028, 1496, 1665
BstNSI	RCATGY	5 cut(s)	448, 875, 968, 1265, 1274
BstSFI	CTRYAG	1 cut(s)	1500
BstSLI	GKGCMC	3 cut(s)	296, 985, 1425
BstV1I	GCAGC	5 cut(s)	848, 1006, 1486, 1508, 1668
BstV2I	GAAGAC	1 cut(s)	593
BstX2I	RGATCY	2 cut(s)	712, 1192
BstXI	CCANNNNNNTGG	2 cut(s)	323, 1672
BstYI	RGATCY	2 cut(s)	712, 1192
Bsu15I	ATCGAT	2 cut(s)	1455, 1536
BsuI	GTATCC	1 cut(s)	1115
BsuRI	GGCC	3 cut(s)	86, 286, 1663
BsuTUI	ATCGAT	2 cut(s)	1455, 1536
BtgI	CCRYGG	1 cut(s)	1443
BtsCI	GGATG	3 cut(s)	121, 1428, 1646
BtsI	GCAGTG	2 cut(s)	959, 985
BtsIMutI	CAGTG	4 cut(s)	810, 917, 959, 985
Cac8I	GCNNGC	8 cut(s)	632, 1017, 1335, 1386, 1390, 1504, 1606, 1661
Cfr13I	GGNCC	4 cut(s)	284, 345, 484, 1662
ClaI	ATCGAT	2 cut(s)	1455, 1536
CseI	GACGC	1 cut(s)	561
Csp6I	GTAC	4 cut(s)	4, 875, 1110, 1351
CviQI	GTAC	4 cut(s)	4, 875, 1110, 1351
DdeI	CTNAG	5 cut(s)	127, 620, 1287, 1476, 1530
DpnI	GATC	7 cut(s)	32, 714, 1194, 1458, 1472, 1535, 1553
DpnII	GATC	7 cut(s)	30, 712, 1192, 1456, 1470, 1533, 1551
DraIII	CACNNNGTG	1 cut(s)	980
Eam1104I	CTCTTC	3 cut(s)	471, 1077, 1092
EarI	CTCTTC	3 cut(s)	471, 1077, 1092
EciI	GGCGGA	1 cut(s)	294
Ecl136II	GAGCTC	2 cut(s)	681, 1102
Eco130I	CCWWGG	3 cut(s)	274, 746, 1236
Eco24I	GRGCYC	2 cut(s)	683, 1104
Eco47I	GGWCC	2 cut(s)	345, 484
Eco53kI	GAGCTC	2 cut(s)	681, 1102
Eco57I	CTGAAG	3 cut(s)	36, 171, 1098
Eco88I	CYCGRG	2 cut(s)	1221, 1609
EcoICRI	GAGCTC	2 cut(s)	681, 1102
EcoO109I	RGGNCCY	1 cut(s)	284
EcoT14I	CCWWGG	3 cut(s)	274, 746, 1236
EcoT22I	ATGCAT	1 cut(s)	873
EcoT38I	GRGCYC	2 cut(s)	683, 1104
ErhI	CCWWGG	3 cut(s)	274, 746, 1236
FalI	AAGNNNNNCTT	2 cut(s)	1346, 1378
FauI	CCCGC	1 cut(s)	515
Fnu4HI	GCNGC	6 cut(s)	452, 837, 1020, 1497, 1500, 1657
FokI	GGATG	3 cut(s)	128, 1415, 1653
FriOI	GRGCYC	2 cut(s)	683, 1104
Fsp4HI	GCNGC	6 cut(s)	452, 837, 1020, 1497, 1500, 1657
FspBI	CTAG	5 cut(s)	564, 684, 708, 1323, 1628
GluI	GCNGC	6 cut(s)	452, 837, 1020, 1497, 1500, 1657
GsaI	CCCAGC	1 cut(s)	1668
GsuI	CTGGAG	2 cut(s)	395, 1090
HaeIII	GGCC	3 cut(s)	86, 286, 1663
HapII	CCGG	1 cut(s)	924
HgaI	GACGC	1 cut(s)	561
HindIII	AAGCTT	1 cut(s)	1128
HinfI	GANTC	3 cut(s)	339, 406, 1073
HpaII	CCGG	1 cut(s)	924
HphI	GGTGA	4 cut(s)	112, 856, 1162, 1252
Hpy166II	GTNNAC	5 cut(s)	6, 294, 741, 847, 1243
Hpy188I	TCNGA	5 cut(s)	405, 623, 942, 1078, 1189
Hpy188III	TCNNGA	5 cut(s)	14, 34, 343, 412, 579
Hpy8I	GTNNAC	5 cut(s)	6, 294, 741, 847, 1243
HpyAV	CCTTC	4 cut(s)	1207, 1276, 1412, 1571
HpyCH4III	ACNGT	6 cut(s)	142, 182, 421, 592, 784, 851
HpyCH4IV	ACGT	1 cut(s)	1572
HpyF10VI	GCNNNNNNNGC	7 cut(s)	460, 614, 678, 958, 1028, 1496, 1665
HpyF3I	CTNAG	5 cut(s)	127, 620, 1287, 1476, 1530
HpySE526I	ACGT	1 cut(s)	1572
Kzo9I	GATC	7 cut(s)	30, 712, 1192, 1456, 1470, 1533, 1551
LguI	GCTCTTC	1 cut(s)	1092
LmnI	GCTCC	4 cut(s)	776, 1012, 1237, 1581
Lsp1109I	GCAGC	5 cut(s)	848, 1006, 1486, 1508, 1668
MaeI	CTAG	5 cut(s)	564, 684, 708, 1323, 1628
MaeII	ACGT	1 cut(s)	1572
MaeIII	GTNAC	3 cut(s)	535, 904, 1480
MalI	GATC	7 cut(s)	32, 714, 1194, 1458, 1472, 1535, 1553
MboI	GATC	7 cut(s)	30, 712, 1192, 1456, 1470, 1533, 1551
MflI	RGATCY	2 cut(s)	712, 1192
MhlI	GDGCHC	5 cut(s)	296, 683, 985, 1104, 1425
MlyI	GAGTC	1 cut(s)	415
MmeI	TCCRAC	1 cut(s)	529
Mph1103I	ATGCAT	1 cut(s)	873
MseI	TTAA	4 cut(s)	219, 600, 1007, 1670
MspA1I	CMGCKG	2 cut(s)	1499, 1659
MspCI	CTTAAG	1 cut(s)	1006
MspI	CCGG	1 cut(s)	924
Mva1269I	GAATGC	1 cut(s)	1700
MwoI	GCNNNNNNNGC	7 cut(s)	460, 614, 678, 958, 1028, 1496, 1665
NdeII	GATC	7 cut(s)	30, 712, 1192, 1456, 1470, 1533, 1551
NlaIV	GGNNCC	2 cut(s)	174, 347
NmuCI	GTSAC	2 cut(s)	904, 1480
NsiI	ATGCAT	1 cut(s)	873
NspI	RCATGY	5 cut(s)	448, 875, 968, 1265, 1274
PaeR7I	CTCGAG	1 cut(s)	1609
PciI	ACATGT	2 cut(s)	1261, 1270
PciSI	GCTCTTC	1 cut(s)	1092
PcsI	WCGNNNNNNNCGW	1 cut(s)	982
PctI	GAATGC	1 cut(s)	1700
PfeI	GAWTC	2 cut(s)	339, 1073
PflMI	CCANNNNNTGG	2 cut(s)	275, 1434
PkrI	GCNGC	6 cut(s)	453, 838, 1021, 1498, 1501, 1658
Ple19I	CGATCG	1 cut(s)	1459
PleI	GAGTC	1 cut(s)	414
PpsI	GAGTC	1 cut(s)	414
PscI	ACATGT	2 cut(s)	1261, 1270
PshBI	ATTAAT	1 cut(s)	219
Psp124BI	GAGCTC	2 cut(s)	683, 1104
PspFI	CCCAGC	1 cut(s)	1664
PspN4I	GGNNCC	2 cut(s)	174, 347
PspPI	GGNCC	4 cut(s)	284, 345, 484, 1662
PspXI	VCTCGAGB	1 cut(s)	1609
PstI	CTGCAG	1 cut(s)	1504
PsuI	RGATCY	2 cut(s)	712, 1192
PvuI	CGATCG	1 cut(s)	1459
PvuII	CAGCTG	2 cut(s)	1499, 1659
RsaI	GTAC	4 cut(s)	5, 876, 1111, 1352
RsaNI	GTAC	4 cut(s)	4, 875, 1110, 1351
SacI	GAGCTC	2 cut(s)	683, 1104
SapI	GCTCTTC	1 cut(s)	1092
SaqAI	TTAA	4 cut(s)	219, 600, 1007, 1670
SatI	GCNGC	6 cut(s)	452, 837, 1020, 1497, 1500, 1657
Sau3AI	GATC	7 cut(s)	30, 712, 1192, 1456, 1470, 1533, 1551
Sau96I	GGNCC	4 cut(s)	284, 345, 484, 1662
SchI	GAGTC	1 cut(s)	415
SduI	GDGCHC	5 cut(s)	296, 683, 985, 1104, 1425
SfcI	CTRYAG	1 cut(s)	1500
Sfr274I	CTCGAG	1 cut(s)	1609
SinI	GGWCC	2 cut(s)	345, 484
SlaI	CTCGAG	1 cut(s)	1609
SmlI	CTYRAG	2 cut(s)	1006, 1609
SmoI	CTYRAG	2 cut(s)	1006, 1609
SsiI	CCGC	4 cut(s)	279, 451, 522, 887
SspI	AATATT	1 cut(s)	1342
SspMI	CTAG	5 cut(s)	564, 684, 708, 1323, 1628
SstI	GAGCTC	2 cut(s)	683, 1104
StyI	CCWWGG	3 cut(s)	274, 746, 1236
TaaI	ACNGT	6 cut(s)	142, 182, 421, 592, 784, 851
TaiI	ACGT	1 cut(s)	1575
TaqI	TCGA	7 cut(s)	358, 1267, 1455, 1459, 1536, 1610, 1646
TatI	WGTACW	3 cut(s)	3, 874, 1350
TauI	GCSGC	1 cut(s)	454
TfiI	GAWTC	2 cut(s)	339, 1073
Tru1I	TTAA	4 cut(s)	219, 600, 1007, 1670
Tru9I	TTAA	4 cut(s)	219, 600, 1007, 1670
TscAI	CASTG	4 cut(s)	817, 924, 959, 985
TseFI	GTSAC	2 cut(s)	904, 1480
TseI	GCWGC	5 cut(s)	836, 1019, 1496, 1499, 1656
Tsp45I	GTSAC	2 cut(s)	904, 1480
TspDTI	ATGAA	4 cut(s)	323, 380, 1013, 1050
TspGWI	ACGGA	1 cut(s)	1432
TspRI	CASTG	4 cut(s)	817, 924, 959, 985
Van91I	CCANNNNNTGG	2 cut(s)	275, 1434
Vha464I	CTTAAG	1 cut(s)	1006
VneI	GTGCAC	1 cut(s)	292
VpaK11BI	GGWCC	2 cut(s)	345, 484
VspI	ATTAAT	1 cut(s)	219
XapI	RAATTY	3 cut(s)	93, 689, 1001
XceI	RCATGY	5 cut(s)	448, 875, 968, 1265, 1274
XcmI	CCANNNNNNNNNTGG	2 cut(s)	94, 1208
XhoI	CTCGAG	1 cut(s)	1609
XspI	CTAG	5 cut(s)	564, 684, 708, 1323, 1628
Zsp2I	ATGCAT	1 cut(s)	873

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.