Region found in RelA / SpoT proteins
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G02260 AT4G02260 AT4G02260 AT4G02260 |
| fragaria_vesca | FvH4_2g26030 FvH4_2g26030 FvH4_3g31250 |
| malus_domestica | MD03G1291500.v1.1 MD11G1306700.v1.1 |
| prunus_persica | Prupe.8G264600_v2.0.a1 |
| pyrus_communis | pycom03g23090 pycom11g26840 |
| rosa_chinensis | RchiOBHm_Chr6g0294391 |
| rosa_laevigata | RLG00000011874 |
| rosa_multiflora | Rmu_co8168868.1_g000001 Rmu_sc0000276.1_g000002 Rmu_sc0024449.1_g000001 Rmu_sc0030396.1_g000001 |
| rosa_roxburghii | Rroxscaffold_4G00298810 Rroxscaffold_7G00173410 |
| rosa_rugosa | Rorug04G0066700 Rorug04G0066800 Rorug04G0066900 Rorug04G0066900 Rorug04G0067000 Rorug04G0067100 Rorug06G0244100 Rorug06G0244200 |
| rosa_samantha | Rh4AG095600 Rh6AG356700 Rh6BG363400 Rh6CG370700 Rh6DG357400 Rh7BG000400 |
| rosa_wichuraiana | Rw4G020730 Rw6G017020 Rw6G031090 Rw7G015830 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 216 |
| Acc16I | TGCGCA | 1 cut(s) | 836 |
| Acc36I | ACCTGC | 1 cut(s) | 883 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1238 |
| AciI | CCGC | 6 cut(s) | 9, 501, 1242, 1414, 1485, 1850 |
| AclWI | GGATC | 1 cut(s) | 405 |
| AcsI | RAATTY | 2 cut(s) | 1056, 1652 |
| AcuI | CTGAAG | 5 cut(s) | 246, 402, 450, 999, 1134 |
| AfaI | GTAC | 4 cut(s) | 273, 735, 968, 1839 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 132, 1238 |
| AflII | CTTAAG | 2 cut(s) | 401, 458 |
| AflIII | ACRYGT | 1 cut(s) | 93 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1070, 1102 |
| AluBI | AGCT | 8 cut(s) | 55, 116, 152, 331, 463, 815, 1207, 1644 |
| AluI | AGCT | 8 cut(s) | 55, 116, 152, 331, 463, 815, 1207, 1644 |
| Alw21I | GWGCWC | 2 cut(s) | 1259, 1646 |
| Alw26I | GTCTC | 4 cut(s) | 487, 674, 878, 1376 |
| Alw44I | GTGCAC | 1 cut(s) | 1255 |
| AlwI | GGATC | 1 cut(s) | 405 |
| AoxI | GGCC | 3 cut(s) | 474, 1047, 1247 |
| ApaLI | GTGCAC | 1 cut(s) | 1255 |
| ApeKI | GCWGC | 4 cut(s) | 328, 331, 498, 1799 |
| ApoI | RAATTY | 2 cut(s) | 1056, 1652 |
| AseI | ATTAAT | 1 cut(s) | 1182 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 444 |
| AspLEI | GCGC | 1 cut(s) | 837 |
| AspS9I | GGNCC | 5 cut(s) | 475, 790, 1247, 1308, 1447 |
| AsuC2I | CCSGG | 1 cut(s) | 794 |
| AsuHPI | GGTGA | 3 cut(s) | 417, 1075, 1819 |
| AsuNHI | GCTAGC | 1 cut(s) | 143 |
| AvaII | GGWCC | 3 cut(s) | 790, 1308, 1447 |
| BaeGI | GKGCMC | 1 cut(s) | 1259 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 600, 633 |
| BanII | GRGCYC | 1 cut(s) | 1646 |
| BbsI | GAAGAC | 1 cut(s) | 1556 |
| Bbv12I | GWGCWC | 2 cut(s) | 1259, 1646 |
| BbvI | GCAGC | 4 cut(s) | 318, 340, 510, 1811 |
| BccI | CCATC | 2 cut(s) | 476, 1438 |
| BceAI | ACGGC | 1 cut(s) | 776 |
| BcnI | CCSGG | 1 cut(s) | 794 |
| BcoDI | GTCTC | 4 cut(s) | 487, 674, 878, 1376 |
| BfaI | CTAG | 7 cut(s) | 144, 437, 773, 908, 1527, 1647, 1671 |
| BfrI | CTTAAG | 2 cut(s) | 401, 458 |
| BfuAI | ACCTGC | 1 cut(s) | 883 |
| BglII | AGATCT | 1 cut(s) | 1675 |
| BisI | GCNGC | 5 cut(s) | 329, 332, 499, 1415, 1800 |
| BlsI | GCNGC | 5 cut(s) | 330, 333, 500, 1416, 1801 |
| Bme1390I | CCNGG | 1 cut(s) | 794 |
| Bme18I | GGWCC | 3 cut(s) | 790, 1308, 1447 |
| BmgT120I | GGNCC | 5 cut(s) | 475, 790, 1247, 1308, 1447 |
| BmiI | GGNNCC | 3 cut(s) | 137, 1137, 1310 |
| BmrFI | CCNGG | 1 cut(s) | 794 |
| BmsI | GCATC | 1 cut(s) | 756 |
| BmtI | GCTAGC | 1 cut(s) | 147 |
| BpiI | GAAGAC | 1 cut(s) | 1556 |
| BpmI | CTGGAG | 1 cut(s) | 1358 |
| BpuMI | CCSGG | 1 cut(s) | 794 |
| BsaAI | YACGTR | 1 cut(s) | 539 |
| BsaJI | CCNNGG | 2 cut(s) | 1237, 1709 |
| BsaWI | WCCGGW | 1 cut(s) | 204 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1731, 1761 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 132, 1238 |
| Bse1I | ACTGG | 2 cut(s) | 1084, 1507 |
| Bse3DI | GCAATG | 5 cut(s) | 573, 873, 887, 1467, 1575 |
| BseDI | CCNNGG | 2 cut(s) | 1237, 1709 |
| BseGI | GGATG | 6 cut(s) | 154, 213, 520, 724, 930, 1084 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 132, 1238 |
| BseMI | GCAATG | 5 cut(s) | 573, 873, 887, 1467, 1575 |
| BseMII | CTCAG | 4 cut(s) | 176, 246, 369, 1597 |
| BseNI | ACTGG | 2 cut(s) | 1084, 1507 |
| BseRI | GAGGAG | 6 cut(s) | 150, 653, 656, 800, 894, 1637 |
| BseSI | GKGCMC | 1 cut(s) | 1259 |
| BseXI | GCAGC | 4 cut(s) | 318, 340, 510, 1811 |
| BsgI | GTGCAG | 2 cut(s) | 317, 1445 |
| BshFI | GGCC | 3 cut(s) | 476, 1049, 1249 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1259, 1646 |
| BsiSI | CCGG | 2 cut(s) | 205, 793 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 132, 1238 |
| BsmAI | GTCTC | 4 cut(s) | 487, 674, 878, 1376 |
| BsmBI | CGTCTC | 1 cut(s) | 487 |
| BsmI | GAATGC | 1 cut(s) | 41 |
| BsnI | GGCC | 3 cut(s) | 476, 1049, 1249 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1259, 1646 |
| Bsp1407I | TGTACA | 2 cut(s) | 733, 966 |
| Bsp143I | GATC | 3 cut(s) | 397, 993, 1675 |
| BspACI | CCGC | 6 cut(s) | 9, 501, 1242, 1414, 1485, 1850 |
| BspANI | GGCC | 3 cut(s) | 476, 1049, 1249 |
| BspCNI | CTCAG | 4 cut(s) | 175, 247, 368, 1596 |
| BspLI | GGNNCC | 3 cut(s) | 137, 1137, 1310 |
| BspMI | ACCTGC | 1 cut(s) | 883 |
| BspOI | GCTAGC | 1 cut(s) | 147 |
| BspPI | GGATC | 1 cut(s) | 405 |
| BspTI | CTTAAG | 2 cut(s) | 401, 458 |
| BsrDI | GCAATG | 5 cut(s) | 573, 873, 887, 1467, 1575 |
| BsrGI | TGTACA | 2 cut(s) | 733, 966 |
| BsrI | ACTGG | 2 cut(s) | 1084, 1507 |
| BssECI | CCNNGG | 2 cut(s) | 1237, 1709 |
| BssMI | GATC | 3 cut(s) | 397, 993, 1675 |
| BssT1I | CCWWGG | 2 cut(s) | 1237, 1709 |
| Bst6I | CTCTTC | 1 cut(s) | 1434 |
| BstAFI | CTTAAG | 2 cut(s) | 401, 458 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1577 |
| BstAUI | TGTACA | 2 cut(s) | 733, 966 |
| BstBAI | YACGTR | 1 cut(s) | 539 |
| BstC8I | GCNNGC | 3 cut(s) | 145, 465, 1595 |
| BstDEI | CTNAG | 6 cut(s) | 162, 255, 355, 684, 1090, 1583 |
| BstF5I | GGATG | 6 cut(s) | 154, 213, 520, 724, 930, 1084 |
| BstHHI | GCGC | 1 cut(s) | 837 |
| BstKTI | GATC | 3 cut(s) | 400, 996, 1678 |
| BstMAI | GTCTC | 4 cut(s) | 487, 674, 878, 1376 |
| BstMBI | GATC | 3 cut(s) | 397, 993, 1675 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 113, 122, 149, 473, 908, 1423, 1577, 1641 |
| BstNSI | RCATGY | 5 cut(s) | 97, 835, 853, 1411, 1838 |
| BstSCI | CCNGG | 1 cut(s) | 792 |
| BstSLI | GKGCMC | 1 cut(s) | 1259 |
| BstV1I | GCAGC | 4 cut(s) | 318, 340, 510, 1811 |
| BstV2I | GAAGAC | 1 cut(s) | 1556 |
| BstX2I | RGATCY | 2 cut(s) | 397, 1675 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1286 |
| BstYI | RGATCY | 2 cut(s) | 397, 1675 |
| BsuRI | GGCC | 3 cut(s) | 476, 1049, 1249 |
| BtsCI | GGATG | 6 cut(s) | 154, 213, 520, 724, 930, 1084 |
| BtsIMutI | CAGTG | 3 cut(s) | 170, 334, 1773 |
| BveI | ACCTGC | 1 cut(s) | 883 |
| Cac8I | GCNNGC | 3 cut(s) | 145, 465, 1595 |
| CfoI | GCGC | 1 cut(s) | 837 |
| Cfr13I | GGNCC | 5 cut(s) | 475, 790, 1247, 1308, 1447 |
| CseI | GACGC | 2 cut(s) | 504, 1524 |
| Csp6I | GTAC | 4 cut(s) | 272, 734, 967, 1838 |
| CviQI | GTAC | 4 cut(s) | 272, 734, 967, 1838 |
| DdeI | CTNAG | 6 cut(s) | 162, 255, 355, 684, 1090, 1583 |
| DpnI | GATC | 3 cut(s) | 399, 995, 1677 |
| DpnII | GATC | 3 cut(s) | 397, 993, 1675 |
| Eam1104I | CTCTTC | 1 cut(s) | 1434 |
| EarI | CTCTTC | 1 cut(s) | 1434 |
| EciI | GGCGGA | 1 cut(s) | 1257 |
| Ecl136II | GAGCTC | 1 cut(s) | 1644 |
| Eco130I | CCWWGG | 2 cut(s) | 1237, 1709 |
| Eco24I | GRGCYC | 1 cut(s) | 1646 |
| Eco47I | GGWCC | 3 cut(s) | 790, 1308, 1447 |
| Eco53kI | GAGCTC | 1 cut(s) | 1644 |
| Eco57I | CTGAAG | 5 cut(s) | 246, 402, 450, 999, 1134 |
| EcoICRI | GAGCTC | 1 cut(s) | 1644 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1247 |
| EcoT14I | CCWWGG | 2 cut(s) | 1237, 1709 |
| EcoT22I | ATGCAT | 1 cut(s) | 1836 |
| EcoT38I | GRGCYC | 1 cut(s) | 1646 |
| ErhI | CCWWGG | 2 cut(s) | 1237, 1709 |
| Esp3I | CGTCTC | 1 cut(s) | 487 |
| FauI | CCCGC | 1 cut(s) | 1478 |
| Fnu4HI | GCNGC | 5 cut(s) | 329, 332, 499, 1415, 1800 |
| FokI | GGATG | 6 cut(s) | 141, 220, 507, 731, 937, 1091 |
| FriOI | GRGCYC | 1 cut(s) | 1646 |
| Fsp4HI | GCNGC | 5 cut(s) | 329, 332, 499, 1415, 1800 |
| FspAI | RTGCGCAY | 1 cut(s) | 836 |
| FspBI | CTAG | 7 cut(s) | 144, 437, 773, 908, 1527, 1647, 1671 |
| FspI | TGCGCA | 1 cut(s) | 836 |
| GlaI | GCGC | 1 cut(s) | 836 |
| GluI | GCNGC | 5 cut(s) | 329, 332, 499, 1415, 1800 |
| GsuI | CTGGAG | 1 cut(s) | 1358 |
| HaeIII | GGCC | 3 cut(s) | 476, 1049, 1249 |
| HapII | CCGG | 2 cut(s) | 205, 793 |
| HgaI | GACGC | 2 cut(s) | 504, 1524 |
| HhaI | GCGC | 1 cut(s) | 837 |
| Hin6I | GCGC | 1 cut(s) | 835 |
| HinP1I | GCGC | 1 cut(s) | 835 |
| HinfI | GANTC | 6 cut(s) | 224, 293, 569, 728, 1302, 1369 |
| HpaII | CCGG | 2 cut(s) | 205, 793 |
| HphI | GGTGA | 3 cut(s) | 417, 1075, 1819 |
| Hpy166II | GTNNAC | 6 cut(s) | 43, 587, 969, 1257, 1704, 1810 |
| Hpy188I | TCNGA | 5 cut(s) | 120, 265, 358, 1368, 1586 |
| Hpy188III | TCNNGA | 6 cut(s) | 380, 977, 997, 1306, 1375, 1542 |
| Hpy8I | GTNNAC | 6 cut(s) | 43, 587, 969, 1257, 1704, 1810 |
| HpyAV | CCTTC | 4 cut(s) | 62, 377, 668, 970 |
| HpyCH4IV | ACGT | 2 cut(s) | 45, 538 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 113, 122, 149, 473, 908, 1423, 1577, 1641 |
| HpyF3I | CTNAG | 6 cut(s) | 162, 255, 355, 684, 1090, 1583 |
| HpySE526I | ACGT | 2 cut(s) | 45, 538 |
| HspAI | GCGC | 1 cut(s) | 835 |
| Kzo9I | GATC | 3 cut(s) | 397, 993, 1675 |
| LmnI | GCTCC | 3 cut(s) | 121, 907, 1739 |
| Lsp1109I | GCAGC | 4 cut(s) | 318, 340, 510, 1811 |
| LweI | GCATC | 1 cut(s) | 756 |
| MaeI | CTAG | 7 cut(s) | 144, 437, 773, 908, 1527, 1647, 1671 |
| MaeII | ACGT | 2 cut(s) | 45, 538 |
| MaeIII | GTNAC | 4 cut(s) | 89, 619, 1498, 1867 |
| MalI | GATC | 3 cut(s) | 399, 995, 1677 |
| MboI | GATC | 3 cut(s) | 397, 993, 1675 |
| MflI | RGATCY | 2 cut(s) | 397, 1675 |
| MhlI | GDGCHC | 2 cut(s) | 1259, 1646 |
| MlyI | GAGTC | 2 cut(s) | 578, 1378 |
| MmeI | TCCRAC | 2 cut(s) | 921, 1492 |
| Mph1103I | ATGCAT | 1 cut(s) | 1836 |
| MroXI | GAANNNNTTC | 1 cut(s) | 444 |
| MseI | TTAA | 5 cut(s) | 402, 459, 1182, 1563, 1918 |
| MspA1I | CMGCKG | 2 cut(s) | 331, 501 |
| MspCI | CTTAAG | 2 cut(s) | 401, 458 |
| MspI | CCGG | 2 cut(s) | 205, 793 |
| MspR9I | CCNGG | 1 cut(s) | 794 |
| Mva1269I | GAATGC | 1 cut(s) | 41 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 113, 122, 149, 473, 908, 1423, 1577, 1641 |
| NciI | CCSGG | 1 cut(s) | 794 |
| NdeII | GATC | 3 cut(s) | 397, 993, 1675 |
| NheI | GCTAGC | 1 cut(s) | 143 |
| NlaIV | GGNNCC | 3 cut(s) | 137, 1137, 1310 |
| NmuCI | GTSAC | 1 cut(s) | 1867 |
| NsbI | TGCGCA | 1 cut(s) | 836 |
| NsiI | ATGCAT | 1 cut(s) | 1836 |
| NspI | RCATGY | 5 cut(s) | 97, 835, 853, 1411, 1838 |
| PciI | ACATGT | 1 cut(s) | 93 |
| PctI | GAATGC | 1 cut(s) | 41 |
| PdmI | GAANNNNTTC | 1 cut(s) | 444 |
| PfeI | GAWTC | 4 cut(s) | 224, 293, 728, 1302 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1238 |
| PkrI | GCNGC | 5 cut(s) | 330, 333, 500, 1416, 1801 |
| PleI | GAGTC | 2 cut(s) | 577, 1377 |
| PpsI | GAGTC | 2 cut(s) | 577, 1377 |
| Ppu21I | YACGTR | 1 cut(s) | 539 |
| PscI | ACATGT | 1 cut(s) | 93 |
| PshBI | ATTAAT | 1 cut(s) | 1182 |
| PsiI | TTATAA | 1 cut(s) | 216 |
| Psp124BI | GAGCTC | 1 cut(s) | 1646 |
| PspN4I | GGNNCC | 3 cut(s) | 137, 1137, 1310 |
| PspPI | GGNCC | 5 cut(s) | 475, 790, 1247, 1308, 1447 |
| PsuI | RGATCY | 2 cut(s) | 397, 1675 |
| PvuII | CAGCTG | 1 cut(s) | 331 |
| RsaI | GTAC | 4 cut(s) | 273, 735, 968, 1839 |
| RsaNI | GTAC | 4 cut(s) | 272, 734, 967, 1838 |
| SacI | GAGCTC | 1 cut(s) | 1646 |
| SaqAI | TTAA | 5 cut(s) | 402, 459, 1182, 1563, 1918 |
| SatI | GCNGC | 5 cut(s) | 329, 332, 499, 1415, 1800 |
| Sau3AI | GATC | 3 cut(s) | 397, 993, 1675 |
| Sau96I | GGNCC | 5 cut(s) | 475, 790, 1247, 1308, 1447 |
| SchI | GAGTC | 2 cut(s) | 578, 1378 |
| ScrFI | CCNGG | 1 cut(s) | 794 |
| SduI | GDGCHC | 2 cut(s) | 1259, 1646 |
| SfaNI | GCATC | 1 cut(s) | 756 |
| SinI | GGWCC | 3 cut(s) | 790, 1308, 1447 |
| SmlI | CTYRAG | 2 cut(s) | 401, 458 |
| SmoI | CTYRAG | 2 cut(s) | 401, 458 |
| SsiI | CCGC | 6 cut(s) | 9, 501, 1242, 1414, 1485, 1850 |
| SspMI | CTAG | 7 cut(s) | 144, 437, 773, 908, 1527, 1647, 1671 |
| SstI | GAGCTC | 1 cut(s) | 1646 |
| StyD4I | CCNGG | 1 cut(s) | 792 |
| StyI | CCWWGG | 2 cut(s) | 1237, 1709 |
| TaiI | ACGT | 2 cut(s) | 48, 541 |
| TaqI | TCGA | 3 cut(s) | 59, 603, 1321 |
| TatI | WGTACW | 4 cut(s) | 271, 733, 966, 1837 |
| TauI | GCSGC | 1 cut(s) | 1417 |
| TfiI | GAWTC | 4 cut(s) | 224, 293, 728, 1302 |
| Tru1I | TTAA | 5 cut(s) | 402, 459, 1182, 1563, 1918 |
| Tru9I | TTAA | 5 cut(s) | 402, 459, 1182, 1563, 1918 |
| TscAI | CASTG | 3 cut(s) | 170, 341, 1780 |
| TseFI | GTSAC | 1 cut(s) | 1867 |
| TseI | GCWGC | 4 cut(s) | 328, 331, 498, 1799 |
| Tsp45I | GTSAC | 1 cut(s) | 1867 |
| TspRI | CASTG | 3 cut(s) | 170, 341, 1780 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1238 |
| Vha464I | CTTAAG | 2 cut(s) | 401, 458 |
| VneI | GTGCAC | 1 cut(s) | 1255 |
| VpaK11BI | GGWCC | 3 cut(s) | 790, 1308, 1447 |
| VspI | ATTAAT | 1 cut(s) | 1182 |
| XapI | RAATTY | 2 cut(s) | 1056, 1652 |
| XceI | RCATGY | 5 cut(s) | 97, 835, 853, 1411, 1838 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1057 |
| XmnI | GAANNNNTTC | 1 cut(s) | 444 |
| XspI | CTAG | 7 cut(s) | 144, 437, 773, 908, 1527, 1647, 1671 |
| Zsp2I | ATGCAT | 1 cut(s) | 1836 |