Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0003029

Physical Location & Seq

Genomic Coordinates Reverse (-)

13410546 .. 13418170

Gene Structure 7625 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00173410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2577 bp

ATGGCTTCCGCTTCTTCCATGTCAGTTCCTTTAGAATGCGTGAACGTATGTAAGCTGTCGAAAGGGGAAGGGAGTGGGAAATATGACTGTAGCATGTTCTCTTGTGCGTGGAAAGCTCCGAGAGCCTTGACGGGGTTCCTTGCTAGCACAGCTCATTCTCCTCAGTGTTCTTGGCTGTCTTATGGACGAAATGGGAGAAGAAACCAGATGAATTATAAATGTGAATCCTCTAATGTGGGAGGTTGCCATTCTACTGAGGCTTCAGACTTTGTACTTCTTGGACAACTCTATGAATCAGGTTTAGTTCATGTTGCTGGTAAGAGGTGGCAGCTGCACTGTTCTTCTTCCTTGTCCTCAGAAACCTCTTATGAGGTTTCTCCTGAAGGATTGTGGGAGGATCTTAAGCCAACTATCTCATACCTCTCGCCTGAAGAACTAGAACTTGTTCATAATGCTCTTAAGCTGGCTTTTGAGGCCCATGATGGTCAAAAGAGACGCAGCGGAGAGCCATTCATCATTCATCCTGTTGAAGTTGCACGTATTTTAGGGGAACTTGAATTGGATTGGGAGTCCATTGCTTCTGGTTTACTACATGATACAGTCGAAGATACCAATGTGGTTACATTTGAAAGGATAGAGGAGGAGTTTGGTGCTACTGTTCGCCATATTGTAGAAGGAGAGACTAAGGTTTCAAAGTTGGGAAAGTTGAAATGTAAGGATGAACATGATTCTGTACAAGATGTAAAAGCAGATGACCTACGGCAGATGCTTCTAGCCATGACAGAGGAGGTCCGGGTTATCATTGTCAAGTTAGCTGACAGATTACATAACATGCGCACTCTTTCACACATGCCTCCACATAAGCAGTCCAGCATTGCAAGGGAGACATTGCAGGTCTTTGCTCCTCTAGCAAAGTTGCTTGGGATGTACCAAATCAAGTTGGAACTTGAAAACCTTTCCTTCATGTACACAAATCCTGAAGATTATGCAAAGATCAGGAGAAAAGTGGCAGACCTCTACAAAGAGCATGAGAAAGAACTCGTAGAGGCCAACAAAATTTTGGTGAAGAAGATTGAGGATGACCAGTTCTTAGAACTTATGACTGTGAAAACTGAAGTTCGTGCTGTATGCAAGGAACCATACAGTATCTATAAATCTGTTCTCAAATCTAAAGGTTCAATTAAAGAGGTCAATCAAATAGCACAGCTTCGTATTATTATCAAACCAAAGCCATGCCTTGGCGGAGGGCCTCTGTGCACCCCACAGCAGATTTGCTACCATGTTCTTGGGTTGGTTCATGGAATCTGGACCCCAATTCCTCGAACTATGAAAGACTATATTGCCACCCCCAAACCTAATGGCTATCAGAGTCTCCAGACAACTGTAATTCCTTTCTTGTATGAGAGCATGTTGCGACTTGAAGTGCAGATAAGGACAGAAGAGATGGACCTGATAGCCCAAAGAGGCATTGCTTCCCATTATAGCGGGAGAGGATTTGTTACTGGTTTAGTTGGACGCGCAATCCCTAGTGGTAGAAGTTCAAGAGGGAAGACTGTCTGCCTTAACAATGCAAACATTGCACTCAGAATTGGCTGGCTCAATGCAATTAGAGAATGGCAAGAGGAGTTCGTTGGCAACATGAGCTCTAGGGAATTTGTAGAAACTATCACTAGAGATCTATTAGGTAGTCGTGTGTTTGTGTTTACTCCAAGGGGAGAGATAAAAAATCTTCCAAAAGGAGCAACTGTTATTGACTACGCCTATATGATACACACTGAAATTGGCAACAAAATGGTAGCAGCAAAGGTGAACGGTAATCTTGTTTCTCCTATGCATGTACTTGCAAATGCGGAAGTTGTGGAGATAGTCACTTACAATTTCTTGAGGGAGCAAGCTGCCCTATCTGCTGATGAAATAACAGCAGATAAAGTAAATGACTTCATTGCTGATTCTGAAGAAGAGAGTGAAGCAGAAGAGCTCCCCAGTACCTCCAAAGGATACAAAGCTTTGTGGGAGAAAATGCTGGTGAATGTTGTAGGATTGGCATTGCCAGAACGAAGTTCCGAAGATCCCTTCCAAATTACCAATGGAAATGCTCGGGTTTCTGCTCCTAAGGTGAACGGGAAACATAACAAACATGTTCGACATGTGAGTTTGAAGGCTGAGGGGGAGTTGTTGTCGCAAGGAAATGGTGTTGCTAGAATGTTGCAAGCTAATATTCCTATGTACAAGGAAGCCTTGCCCAGTTTAGAAAGTTGGCAAGCCAGCAAGATTACCTCTTGGCATAATGTTGAAGGGCACTCCATCCTTTGGTTTTCCGTGGTTTCCATCGATCGAAAAGGTATGATCGCTGAGGTCACAACAGCAATGGCAGCTGCAGGCATTACTATTTGTTCCTGTGTGGCTGAGATCGATGGGGAAAGGGGGATCGCTGTCATGTTATTTCATGTTGAAGGGAGCCTGGAAAGTTTGGCTAATGCTTGCTCCAGCATTGATATAATTCTAGGTGTTTTGGGATGGTCAATGGGTTGCAGCTGGCCCAGCTTAATGGATAAGCCCCGATTACTTGAATGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008893 GO:0009507 GO:0009536 GO:0009611 GO:0009987 GO:0010150 GO:0015979 GO:0016787 GO:0016788 GO:0016794 GO:0032501 GO:0032502 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko00230 map00230

Pfam Domains

Protein Families

HD_4 RelA_SpoT TGS

Protein Analysis

858

Amino Acids

95.31

Weight (kDa)

6.13

Isoelectric Point (pI)

44.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HD_4	PF13328	152 - 309	8.4e-45	HD domain
HD	PF01966	172 - 278	5.9e-12	HD domain
RelA_SpoT	PF04607	378 - 494	8.2e-23	Region found in RelA / SpoT proteins
TGS	PF02824	565 - 624	4.7e-21	TGS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0003029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02260 AT4G02260 AT4G02260 AT4G02260
fragaria_vesca	FvH4_2g26030 FvH4_2g26030 FvH4_3g31250
malus_domestica	MD03G1291500.v1.1 MD11G1306700.v1.1
prunus_persica	Prupe.8G264600_v2.0.a1
pyrus_communis	pycom03g23090 pycom11g26840
rosa_chinensis	RchiOBHm_Chr6g0294391
rosa_laevigata	RLG00000011874
rosa_multiflora	Rmu_co8168868.1_g000001 Rmu_sc0000276.1_g000002 Rmu_sc0024449.1_g000001 Rmu_sc0030396.1_g000001
rosa_roxburghii	Rroxscaffold_4G00298810 Rroxscaffold_7G00173410
rosa_rugosa	Rorug04G0066700 Rorug04G0066800 Rorug04G0066900 Rorug04G0066900 Rorug04G0067000 Rorug04G0067100 Rorug06G0244100 Rorug06G0244200
rosa_samantha	Rh4AG095600 Rh6AG356700 Rh6BG363400 Rh6CG370700 Rh6DG357400 Rh7BG000400
rosa_wichuraiana	Rw4G020730 Rw6G017020 Rw6G031090 Rw7G015830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	216
Acc16I	TGCGCA	1 cut(s)	836
Acc36I	ACCTGC	1 cut(s)	883
AccB7I	CCANNNNNTGG	2 cut(s)	1238, 2310
AccII	CGCG	1 cut(s)	1518
AciI	CCGC	5 cut(s)	9, 501, 1242, 1485, 1850
AclWI	GGATC	3 cut(s)	405, 2063, 2435
AcsI	RAATTY	2 cut(s)	1056, 1652
AcuI	CTGAAG	6 cut(s)	246, 402, 450, 999, 1134, 1974
AfaI	GTAC	7 cut(s)	273, 735, 929, 968, 1839, 1987, 2228
AfiI	CCNNNNNNNGG	3 cut(s)	132, 1238, 2310
AflII	CTTAAG	2 cut(s)	401, 458
AflIII	ACRYGT	2 cut(s)	2137, 2146
AjnI	CCWGG	1 cut(s)	2460
AloI	GAACNNNNNNTCC	2 cut(s)	1070, 1102
Alw21I	GWGCWC	3 cut(s)	1259, 1646, 1980
Alw26I	GTCTC	4 cut(s)	487, 674, 878, 1376
Alw44I	GTGCAC	1 cut(s)	1255
AlwI	GGATC	3 cut(s)	405, 2063, 2435
Ama87I	CYCGRG	1 cut(s)	2097
AoxI	GGCC	4 cut(s)	474, 1047, 1247, 2537
ApaLI	GTGCAC	1 cut(s)	1255
ApeKI	GCWGC	8 cut(s)	328, 331, 498, 1799, 1895, 2372, 2375, 2532
ApoI	RAATTY	2 cut(s)	1056, 1652
Asp700I	GAANNNNTTC	1 cut(s)	444
AspLEI	GCGC	2 cut(s)	837, 1520
AspS9I	GGNCC	6 cut(s)	475, 790, 1247, 1308, 1447, 2538
AsuC2I	CCSGG	1 cut(s)	794
AsuHPI	GGTGA	4 cut(s)	1075, 1819, 2038, 2128
AsuNHI	GCTAGC	1 cut(s)	143
AvaI	CYCGRG	1 cut(s)	2097
AvaII	GGWCC	3 cut(s)	790, 1308, 1447
AxyI	CCTNAGG	1 cut(s)	2112
BaeGI	GKGCMC	2 cut(s)	1259, 2301
BaeI	ACNNNNGTAYC	2 cut(s)	600, 633
BanII	GRGCYC	2 cut(s)	1646, 1980
BbsI	GAAGAC	1 cut(s)	1556
Bbv12I	GWGCWC	3 cut(s)	1259, 1646, 1980
BbvCI	CCTCAGC	2 cut(s)	2163, 2352
BbvI	GCAGC	8 cut(s)	318, 340, 510, 1811, 1882, 2362, 2384, 2544
BccI	CCATC	6 cut(s)	476, 1438, 2312, 2336, 2408, 2511
BceAI	ACGGC	1 cut(s)	776
BciT130I	CCWGG	1 cut(s)	2462
BciVI	GTATCC	1 cut(s)	1991
BcnI	CCSGG	1 cut(s)	794
BcoDI	GTCTC	4 cut(s)	487, 674, 878, 1376
BfaI	CTAG	9 cut(s)	144, 437, 773, 908, 1527, 1647, 1671, 2199, 2504
BfmI	CTRYAG	2 cut(s)	88, 2376
BfrI	CTTAAG	2 cut(s)	401, 458
BfuAI	ACCTGC	1 cut(s)	883
BfuI	GTATCC	1 cut(s)	1991
BglII	AGATCT	1 cut(s)	1675
BisI	GCNGC	8 cut(s)	329, 332, 499, 1800, 1896, 2373, 2376, 2533
BlsI	GCNGC	8 cut(s)	330, 333, 500, 1801, 1897, 2374, 2377, 2534
Bme1390I	CCNGG	2 cut(s)	794, 2462
Bme18I	GGWCC	3 cut(s)	790, 1308, 1447
BmeT110I	CYCGRG	1 cut(s)	2097
BmgT120I	GGNCC	6 cut(s)	475, 790, 1247, 1308, 1447, 2538
BmiI	GGNNCC	4 cut(s)	137, 1137, 1310, 2459
BmrFI	CCNGG	2 cut(s)	794, 2462
BmrI	ACTGGG	2 cut(s)	1977, 2238
BmsI	GCATC	1 cut(s)	756
BmtI	GCTAGC	1 cut(s)	147
BmuI	ACTGGG	2 cut(s)	1977, 2238
BpiI	GAAGAC	1 cut(s)	1556
BpmI	CTGGAG	2 cut(s)	1358, 2470
Bpu10I	CCTNAGC	2 cut(s)	2163, 2352
BpuEI	CTTGAG	1 cut(s)	1903
BpuMI	CCSGG	1 cut(s)	794
Bsa29I	ATCGAT	2 cut(s)	2331, 2412
BsaAI	YACGTR	1 cut(s)	539
BsaJI	CCNNGG	3 cut(s)	1237, 1709, 2319
BsaXI	ACNNNNNCTCC	4 cut(s)	1731, 1761, 2162, 2192
Bsc4I	CCNNNNNNNGG	3 cut(s)	132, 1238, 2310
Bse1I	ACTGG	4 cut(s)	1084, 1507, 1983, 2244
Bse21I	CCTNAGG	1 cut(s)	2112
Bse3DI	GCAATG	8 cut(s)	573, 873, 887, 1467, 1575, 1941, 2045, 2373
BseBI	CCWGG	1 cut(s)	2462
BseCI	ATCGAT	2 cut(s)	2331, 2412
BseDI	CCNNGG	3 cut(s)	1237, 1709, 2319
BseGI	GGATG	6 cut(s)	520, 724, 930, 1084, 2304, 2522
BseLI	CCNNNNNNNGG	3 cut(s)	132, 1238, 2310
BseMI	GCAATG	8 cut(s)	573, 873, 887, 1467, 1575, 1941, 2045, 2373
BseMII	CTCAG	7 cut(s)	176, 246, 369, 1597, 2154, 2343, 2397
BseNI	ACTGG	4 cut(s)	1084, 1507, 1983, 2244
BseRI	GAGGAG	6 cut(s)	150, 653, 656, 800, 894, 1637
BseSI	GKGCMC	2 cut(s)	1259, 2301
BseXI	GCAGC	8 cut(s)	318, 340, 510, 1811, 1882, 2362, 2384, 2544
BseYI	CCCAGC	1 cut(s)	2540
BsgI	GTGCAG	2 cut(s)	317, 1445
Bsh1236I	CGCG	1 cut(s)	1518
Bsh1285I	CGRYCG	1 cut(s)	2335
BshFI	GGCC	4 cut(s)	476, 1049, 1249, 2539
BshVI	ATCGAT	2 cut(s)	2331, 2412
BsiEI	CGRYCG	1 cut(s)	2335
BsiHKAI	GWGCWC	3 cut(s)	1259, 1646, 1980
BsiHKCI	CYCGRG	1 cut(s)	2097
BsiSI	CCGG	1 cut(s)	793
BslI	CCNNNNNNNGG	3 cut(s)	132, 1238, 2310
BsmAI	GTCTC	4 cut(s)	487, 674, 878, 1376
BsmBI	CGTCTC	1 cut(s)	487
BsmI	GAATGC	2 cut(s)	41, 2576
BsnI	GGCC	4 cut(s)	476, 1049, 1249, 2539
BsoBI	CYCGRG	1 cut(s)	2097
Bsp1286I	GDGCHC	4 cut(s)	1259, 1646, 1980, 2301
Bsp1407I	TGTACA	3 cut(s)	733, 966, 2226
Bsp143I	GATC	8 cut(s)	397, 993, 1675, 2068, 2332, 2346, 2409, 2427
BspACI	CCGC	5 cut(s)	9, 501, 1242, 1485, 1850
BspANI	GGCC	4 cut(s)	476, 1049, 1249, 2539
BspCNI	CTCAG	7 cut(s)	175, 247, 368, 1596, 2155, 2344, 2398
BspDI	ATCGAT	2 cut(s)	2331, 2412
BspFNI	CGCG	1 cut(s)	1518
BspLI	GGNNCC	4 cut(s)	137, 1137, 1310, 2459
BspMAI	CTGCAG	1 cut(s)	2380
BspMI	ACCTGC	1 cut(s)	883
BspOI	GCTAGC	1 cut(s)	147
BspPI	GGATC	3 cut(s)	405, 2063, 2435
BspQI	GCTCTTC	1 cut(s)	1968
BspTI	CTTAAG	2 cut(s)	401, 458
BsrDI	GCAATG	8 cut(s)	573, 873, 887, 1467, 1575, 1941, 2045, 2373
BsrGI	TGTACA	3 cut(s)	733, 966, 2226
BsrI	ACTGG	4 cut(s)	1084, 1507, 1983, 2244
BssECI	CCNNGG	3 cut(s)	1237, 1709, 2319
BssMI	GATC	8 cut(s)	397, 993, 1675, 2068, 2332, 2346, 2409, 2427
BssT1I	CCWWGG	2 cut(s)	1237, 1709
Bst2UI	CCWGG	1 cut(s)	2462
Bst6I	CTCTTC	3 cut(s)	1434, 1953, 1968
BstAFI	CTTAAG	2 cut(s)	401, 458
BstAPI	GCANNNNNTGC	1 cut(s)	1577
BstAUI	TGTACA	3 cut(s)	733, 966, 2226
BstBAI	YACGTR	1 cut(s)	539
BstDSI	CCRYGG	1 cut(s)	2319
BstF5I	GGATG	6 cut(s)	520, 724, 930, 1084, 2304, 2522
BstFNI	CGCG	1 cut(s)	1518
BstHHI	GCGC	2 cut(s)	837, 1520
BstKTI	GATC	8 cut(s)	400, 996, 1678, 2071, 2335, 2349, 2412, 2430
BstMAI	GTCTC	4 cut(s)	487, 674, 878, 1376
BstMBI	GATC	8 cut(s)	397, 993, 1675, 2068, 2332, 2346, 2409, 2427
BstMCI	CGRYCG	1 cut(s)	2335
BstNI	CCWGG	1 cut(s)	2462
BstNSI	RCATGY	7 cut(s)	97, 835, 853, 1411, 1838, 2141, 2150
BstSCI	CCNGG	2 cut(s)	792, 2460
BstSFI	CTRYAG	2 cut(s)	88, 2376
BstSLI	GKGCMC	2 cut(s)	1259, 2301
BstUI	CGCG	1 cut(s)	1518
BstV1I	GCAGC	8 cut(s)	318, 340, 510, 1811, 1882, 2362, 2384, 2544
BstV2I	GAAGAC	1 cut(s)	1556
BstX2I	RGATCY	3 cut(s)	397, 1675, 2068
BstXI	CCANNNNNNTGG	2 cut(s)	1286, 2548
BstYI	RGATCY	3 cut(s)	397, 1675, 2068
Bsu15I	ATCGAT	2 cut(s)	2331, 2412
Bsu36I	CCTNAGG	1 cut(s)	2112
BsuI	GTATCC	1 cut(s)	1991
BsuRI	GGCC	4 cut(s)	476, 1049, 1249, 2539
BsuTUI	ATCGAT	2 cut(s)	2331, 2412
BtgI	CCRYGG	1 cut(s)	2319
BtsCI	GGATG	6 cut(s)	520, 724, 930, 1084, 2304, 2522
BtsIMutI	CAGTG	3 cut(s)	170, 334, 1773
BveI	ACCTGC	1 cut(s)	883
CfoI	GCGC	2 cut(s)	837, 1520
Cfr13I	GGNCC	6 cut(s)	475, 790, 1247, 1308, 1447, 2538
ClaI	ATCGAT	2 cut(s)	2331, 2412
CseI	GACGC	2 cut(s)	504, 1524
Csp6I	GTAC	7 cut(s)	272, 734, 928, 967, 1838, 1986, 2227
CviQI	GTAC	7 cut(s)	272, 734, 928, 967, 1838, 1986, 2227
DpnI	GATC	8 cut(s)	399, 995, 1677, 2070, 2334, 2348, 2411, 2429
DpnII	GATC	8 cut(s)	397, 993, 1675, 2068, 2332, 2346, 2409, 2427
Eam1104I	CTCTTC	3 cut(s)	1434, 1953, 1968
EarI	CTCTTC	3 cut(s)	1434, 1953, 1968
EciI	GGCGGA	1 cut(s)	1257
Ecl136II	GAGCTC	2 cut(s)	1644, 1978
Eco130I	CCWWGG	2 cut(s)	1237, 1709
Eco24I	GRGCYC	2 cut(s)	1646, 1980
Eco47I	GGWCC	3 cut(s)	790, 1308, 1447
Eco53kI	GAGCTC	2 cut(s)	1644, 1978
Eco57I	CTGAAG	6 cut(s)	246, 402, 450, 999, 1134, 1974
Eco81I	CCTNAGG	1 cut(s)	2112
Eco88I	CYCGRG	1 cut(s)	2097
EcoICRI	GAGCTC	2 cut(s)	1644, 1978
EcoO109I	RGGNCCY	1 cut(s)	1247
EcoRII	CCWGG	1 cut(s)	2460
EcoT14I	CCWWGG	2 cut(s)	1237, 1709
EcoT22I	ATGCAT	1 cut(s)	1836
EcoT38I	GRGCYC	2 cut(s)	1646, 1980
ErhI	CCWWGG	2 cut(s)	1237, 1709
Esp3I	CGTCTC	1 cut(s)	487
FalI	AAGNNNNNCTT	2 cut(s)	2222, 2254
FauI	CCCGC	1 cut(s)	1478
Fnu4HI	GCNGC	8 cut(s)	329, 332, 499, 1800, 1896, 2373, 2376, 2533
FokI	GGATG	6 cut(s)	507, 731, 937, 1091, 2291, 2529
FriOI	GRGCYC	2 cut(s)	1646, 1980
Fsp4HI	GCNGC	8 cut(s)	329, 332, 499, 1800, 1896, 2373, 2376, 2533
FspAI	RTGCGCAY	1 cut(s)	836
FspBI	CTAG	9 cut(s)	144, 437, 773, 908, 1527, 1647, 1671, 2199, 2504
FspI	TGCGCA	1 cut(s)	836
GlaI	GCGC	2 cut(s)	836, 1519
GluI	GCNGC	8 cut(s)	329, 332, 499, 1800, 1896, 2373, 2376, 2533
GsaI	CCCAGC	1 cut(s)	2544
GsuI	CTGGAG	2 cut(s)	1358, 2470
HaeIII	GGCC	4 cut(s)	476, 1049, 1249, 2539
HapII	CCGG	1 cut(s)	793
HgaI	GACGC	2 cut(s)	504, 1524
HhaI	GCGC	2 cut(s)	837, 1520
Hin6I	GCGC	2 cut(s)	835, 1518
HinP1I	GCGC	2 cut(s)	835, 1518
HindIII	AAGCTT	1 cut(s)	2004
HinfI	GANTC	7 cut(s)	224, 293, 569, 728, 1302, 1369, 1949
HpaII	CCGG	1 cut(s)	793
HphI	GGTGA	4 cut(s)	1075, 1819, 2038, 2128
Hpy166II	GTNNAC	7 cut(s)	43, 587, 969, 1257, 1704, 1810, 2119
Hpy188I	TCNGA	7 cut(s)	120, 265, 358, 1368, 1586, 1954, 2065
Hpy188III	TCNNGA	7 cut(s)	380, 977, 997, 1306, 1375, 1542, 1882
Hpy8I	GTNNAC	7 cut(s)	43, 587, 969, 1257, 1704, 1810, 2119
HpyAV	CCTTC	8 cut(s)	62, 377, 668, 970, 2083, 2152, 2288, 2447
HpyCH4IV	ACGT	2 cut(s)	45, 538
HpySE526I	ACGT	2 cut(s)	45, 538
HspAI	GCGC	2 cut(s)	835, 1518
Kzo9I	GATC	8 cut(s)	397, 993, 1675, 2068, 2332, 2346, 2409, 2427
LguI	GCTCTTC	1 cut(s)	1968
LmnI	GCTCC	8 cut(s)	121, 907, 1739, 1888, 1983, 2113, 2457, 2489
Lsp1109I	GCAGC	8 cut(s)	318, 340, 510, 1811, 1882, 2362, 2384, 2544
LweI	GCATC	1 cut(s)	756
MaeI	CTAG	9 cut(s)	144, 437, 773, 908, 1527, 1647, 1671, 2199, 2504
MaeII	ACGT	2 cut(s)	45, 538
MaeIII	GTNAC	4 cut(s)	619, 1498, 1867, 2356
MalI	GATC	8 cut(s)	399, 995, 1677, 2070, 2334, 2348, 2411, 2429
MboI	GATC	8 cut(s)	397, 993, 1675, 2068, 2332, 2346, 2409, 2427
MflI	RGATCY	3 cut(s)	397, 1675, 2068
MhlI	GDGCHC	4 cut(s)	1259, 1646, 1980, 2301
MlyI	GAGTC	2 cut(s)	578, 1378
MmeI	TCCRAC	2 cut(s)	921, 1492
Mph1103I	ATGCAT	1 cut(s)	1836
MroXI	GAANNNNTTC	1 cut(s)	444
MseI	TTAA	5 cut(s)	402, 459, 1182, 1563, 2546
MspA1I	CMGCKG	4 cut(s)	331, 501, 2375, 2535
MspCI	CTTAAG	2 cut(s)	401, 458
MspI	CCGG	1 cut(s)	793
MspR9I	CCNGG	2 cut(s)	794, 2462
Mva1269I	GAATGC	2 cut(s)	41, 2576
MvaI	CCWGG	1 cut(s)	2462
MvnI	CGCG	1 cut(s)	1518
NciI	CCSGG	1 cut(s)	794
NdeII	GATC	8 cut(s)	397, 993, 1675, 2068, 2332, 2346, 2409, 2427
NheI	GCTAGC	1 cut(s)	143
NlaIV	GGNNCC	4 cut(s)	137, 1137, 1310, 2459
NmuCI	GTSAC	2 cut(s)	1867, 2356
NsbI	TGCGCA	1 cut(s)	836
NsiI	ATGCAT	1 cut(s)	1836
NspI	RCATGY	7 cut(s)	97, 835, 853, 1411, 1838, 2141, 2150
PciI	ACATGT	2 cut(s)	2137, 2146
PciSI	GCTCTTC	1 cut(s)	1968
PctI	GAATGC	2 cut(s)	41, 2576
PdmI	GAANNNNTTC	1 cut(s)	444
PfeI	GAWTC	5 cut(s)	224, 293, 728, 1302, 1949
PflMI	CCANNNNNTGG	2 cut(s)	1238, 2310
PkrI	GCNGC	8 cut(s)	330, 333, 500, 1801, 1897, 2374, 2377, 2534
Ple19I	CGATCG	1 cut(s)	2335
PleI	GAGTC	2 cut(s)	577, 1377
PpsI	GAGTC	2 cut(s)	577, 1377
Ppu21I	YACGTR	1 cut(s)	539
PscI	ACATGT	2 cut(s)	2137, 2146
PsiI	TTATAA	1 cut(s)	216
Psp124BI	GAGCTC	2 cut(s)	1646, 1980
Psp6I	CCWGG	1 cut(s)	2460
PspFI	CCCAGC	1 cut(s)	2540
PspGI	CCWGG	1 cut(s)	2460
PspN4I	GGNNCC	4 cut(s)	137, 1137, 1310, 2459
PspPI	GGNCC	6 cut(s)	475, 790, 1247, 1308, 1447, 2538
PstI	CTGCAG	1 cut(s)	2380
PsuI	RGATCY	3 cut(s)	397, 1675, 2068
PvuI	CGATCG	1 cut(s)	2335
PvuII	CAGCTG	3 cut(s)	331, 2375, 2535
RsaI	GTAC	7 cut(s)	273, 735, 929, 968, 1839, 1987, 2228
RsaNI	GTAC	7 cut(s)	272, 734, 928, 967, 1838, 1986, 2227
SacI	GAGCTC	2 cut(s)	1646, 1980
SapI	GCTCTTC	1 cut(s)	1968
SaqAI	TTAA	5 cut(s)	402, 459, 1182, 1563, 2546
SatI	GCNGC	8 cut(s)	329, 332, 499, 1800, 1896, 2373, 2376, 2533
Sau3AI	GATC	8 cut(s)	397, 993, 1675, 2068, 2332, 2346, 2409, 2427
Sau96I	GGNCC	6 cut(s)	475, 790, 1247, 1308, 1447, 2538
SchI	GAGTC	2 cut(s)	578, 1378
ScrFI	CCNGG	2 cut(s)	794, 2462
SduI	GDGCHC	4 cut(s)	1259, 1646, 1980, 2301
SfaNI	GCATC	1 cut(s)	756
SfcI	CTRYAG	2 cut(s)	88, 2376
SinI	GGWCC	3 cut(s)	790, 1308, 1447
SmlI	CTYRAG	3 cut(s)	401, 458, 1882
SmoI	CTYRAG	3 cut(s)	401, 458, 1882
SsiI	CCGC	5 cut(s)	9, 501, 1242, 1485, 1850
SspI	AATATT	1 cut(s)	2218
SspMI	CTAG	9 cut(s)	144, 437, 773, 908, 1527, 1647, 1671, 2199, 2504
SstI	GAGCTC	2 cut(s)	1646, 1980
StyD4I	CCNGG	2 cut(s)	792, 2460
StyI	CCWWGG	2 cut(s)	1237, 1709
TaiI	ACGT	2 cut(s)	48, 541
TaqI	TCGA	7 cut(s)	59, 603, 1321, 2143, 2331, 2335, 2412
TatI	WGTACW	5 cut(s)	271, 733, 966, 1837, 2226
TfiI	GAWTC	5 cut(s)	224, 293, 728, 1302, 1949
Tru1I	TTAA	5 cut(s)	402, 459, 1182, 1563, 2546
Tru9I	TTAA	5 cut(s)	402, 459, 1182, 1563, 2546
TscAI	CASTG	3 cut(s)	170, 341, 1780
TseFI	GTSAC	2 cut(s)	1867, 2356
TseI	GCWGC	8 cut(s)	328, 331, 498, 1799, 1895, 2372, 2375, 2532
Tsp45I	GTSAC	2 cut(s)	1867, 2356
TspGWI	ACGGA	1 cut(s)	2308
TspRI	CASTG	3 cut(s)	170, 341, 1780
Van91I	CCANNNNNTGG	2 cut(s)	1238, 2310
Vha464I	CTTAAG	2 cut(s)	401, 458
VneI	GTGCAC	1 cut(s)	1255
VpaK11BI	GGWCC	3 cut(s)	790, 1308, 1447
XapI	RAATTY	2 cut(s)	1056, 1652
XceI	RCATGY	7 cut(s)	97, 835, 853, 1411, 1838, 2141, 2150
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1057, 2084
XmnI	GAANNNNTTC	1 cut(s)	444
XspI	CTAG	9 cut(s)	144, 437, 773, 908, 1527, 1647, 1671, 2199, 2504
Zsp2I	ATGCAT	1 cut(s)	1836

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.