Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0003029

Physical Location & Seq

Genomic Coordinates Reverse (-)

42087509 .. 42094841

Gene Structure 7333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1306700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2646 bp

ATGGCTTCCGCTCCTTCCATGTCAGTTTCTTTAGAATGCGTGAATGTGTGTAAGCTATCGAAAGGGGACGCAAGTGGGAGAAATGACTGTAGCGTGCTCTCCTGTGCTTGGAAAGCTCCAAGAGTCTTAACGGGGTTTCTTGCAAGCACCGCTCATCCTCCTCAGTGTTCGTGGTTGCCGGATGGACGAAATGGAAGAAGAAACCGGATTAATCATAGATGTCAGTCCTCTAGCATAGGAGGTTGGAATTCTGCCGAAGCTTCAGATTTTGTTGTTCTTGGAAGACTGCTTAAATCCGGTTTGCTTCATGTTGGTTGTAAGAGATGGCATCTGCGCTGTTCTTCATCTTTGTGCTCGGATGTCTTGGATGAGGTTTCTCCTGAATCATTGTGGGAGGATCTTAAGCCGTCTATCTCATACCTCTCACCTGAGGAACTGGAACTTGTCCATAATGCTTTTAAGCTGGCTTTTGAAGCCCATGATGGTCAGAAAAGGCGCAGTGGAGAGCCTTTCATCATTCATCCCGTTGAAGTTGCACGAATTTTAGGAGAACTTGAGTTGGATTGGGAATCTATTGCATCTGGATTACTACATGATACAGTCGAGGATACCAATGTTGTTACTTTCGAAAGGATAGAGGAGGAGTTTGGTGCTACTGTTCGCCATATTGTAGAAGGAGAAACTAAGGTGTCGAAGCTGGGAAAATTGAAATGCAAGAGTGAAGAGGATTCTGTACAAGATGTAAAAGCAGATGACCTTCGCCAGATGCTTCTAGCCATGACACAGGAGGTCCGAGTTATCATTGTCAAATTAGCTGACAGACTCCATAACATGCGTACTCTTTCACACATGCCTCCGCATAAGCAGTCAAGCATTGCACGAGAGACATTGCAGGTCTTTGCTCCTCTAGCAAAGTTGCTTGGGATGTACCAAATCAAGTTGGAACTCGAAAACCTTTCCTTCATGTACACAAATGCTGAAGATTATGCTAAGATCAAAAGAAGAGTTGCAGGCCTCTACAAAGAGCATGAGAAAGAACTTGTGGAGGCAAATAAAATTTTGATGAAGAGGATCGAGGATGATGAGTTCTTAGAACTTATGACTGTGAAAACTGAAGTTCGTGCTGTGTGTAAGGAACCATACAGTATCTATAAGGCTGCGCTCAAATGTAAAAGTTCAGTTAACGAGATCAATCAAATTGCACAGCTTCGAATTGTAATCAAACCAAAGCCATCCCTTGGAGCTGGACCTTTGTGCACCCCACAACAGATCTGCTACCATGTCCTAGGGTTGGTTCATGGAATCTGGACCCCTATTCCTCGAACGATGAAAGACTATATTGCCACTCCAAAACCTAATGGCTATCAAAGTCTCCATACAACTGTAATTCCTTTCTTGTATGAGAGCATTTTGCGTCTAGAAGTGCAGATAAGAACAGAAGAGATGGATCTGATAGCTCAGAGAGGAATTGCTTCTCATTATAGTGGGAGAGGATCTGTTACCGGTTTAGTTGGGCGTAGTCTCCCTAATGGTAGAAGTTCAAGAGGGAAGACTGTTTGCCTTAACAATGCAAACATTGCACTCAGGATTGGCTGGCTCAATGCAATTAGAGAATGGCAAGAAGAATTTGTTGGCAACATGAGCTCTAGAGAATTTGTTGAAACTATCACTAGAGATCTATTAGGCAGTCGTGTGTTTGTCTTTACTCCCAGGGGAGAGATAAAAAATCTTCCGAAAGGGGCAACTGTTATTGACTATGCATACATGATACACACTGAAGTTGGCAACAAAATGGTAGCAGCAAAGGTCAATGGAAATCTTGTTTCTCCAATGCATGTACTTGTAAATGCAGAAGTTGTGGAGATAATCACTTATAATTCACTTACCGGAAAATCAGCTTTTCAGAGGCATAAACAGTGGTTGCAACATGCAAAAACACGTAGTGCCAGACACAAAATTATGAAATTCTTAAGGGAGCAAGCAGCCCTGTCTGTTGCTGAAATAACAGCCGATAAAGTACATGACTTCATTGCTGATTCTGAAGAACAGATCGAAGCACAAGAGCTCCCAAGTACCTCCAAAGGATACAAACCTTTATGGGAAAAAATGAAGGGTATTTCAGTGCCAGAACGAAGTTCTATAGATCCCTTTCAAATTACAAATGGAAGCGCCTTGGCTCCCAAGGTGAATGGGAAGCACAACAAGAATGTTCAGCATGTAAGTTTAAAGGCTGCAGGGGAGTCGTTGTCACAAGGGAATGGTGTTGCCAGAATGTTGCAAGCTAACATTCCAATGTGCAAGGAAGCCTTGCCCAGTTTAGAAAGTTGGCAGGCCAGCAAGGTTGCCTCTTGGCATAGTATTGAAGGGCACTCCATACAATGGTTCTGCGTGGTTTCTGTAGATCGAAAAGGTATGATGGCTGAGGTTACAACAGCATTGGCAGCTGCAGGCATTACTATTTGTTCTTGTGTGGCTGAGATTGACGGGGAAAGGAGAATGGCGGTCATGTTATTTCACATTGAAGGAAATGCGGAAAGTTTGGTTATTGCATGCTCAAGCATCGATATAATTCTAGGTGTCTTGGGGTGGTCTACAGGTTGCAGCGTACCAAGCTCAAAGGATAATCTGCAATATCTTGAATGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008893 GO:0009507 GO:0009536 GO:0009611 GO:0009987 GO:0010150 GO:0015979 GO:0016787 GO:0016788 GO:0016794 GO:0032501 GO:0032502 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko00230 map00230

Pfam Domains

Protein Families

HD_4 RelA_SpoT TGS

Protein Analysis

882

Amino Acids

97.85

Weight (kDa)

8.09

Isoelectric Point (pI)

49.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HD_4	PF13328	152 - 309	9.3e-45	HD domain
HD	PF01966	172 - 278	1.2e-12	HD domain
RelA_SpoT	PF04607	378 - 494	9.5e-24	Region found in RelA / SpoT proteins
TGS	PF02824	565 - 624	2.6e-20	TGS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0003029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02260 AT4G02260 AT4G02260 AT4G02260
fragaria_vesca	FvH4_2g26030 FvH4_2g26030 FvH4_3g31250
malus_domestica	MD03G1291500.v1.1 MD11G1306700.v1.1
prunus_persica	Prupe.8G264600_v2.0.a1
pyrus_communis	pycom03g23090 pycom11g26840
rosa_chinensis	RchiOBHm_Chr6g0294391
rosa_laevigata	RLG00000011874
rosa_multiflora	Rmu_co8168868.1_g000001 Rmu_sc0000276.1_g000002 Rmu_sc0024449.1_g000001 Rmu_sc0030396.1_g000001
rosa_roxburghii	Rroxscaffold_4G00298810 Rroxscaffold_7G00173410
rosa_rugosa	Rorug04G0066700 Rorug04G0066800 Rorug04G0066900 Rorug04G0066900 Rorug04G0067000 Rorug04G0067100 Rorug06G0244100 Rorug06G0244200
rosa_samantha	Rh4AG095600 Rh6AG356700 Rh6BG363400 Rh6CG370700 Rh6DG357400 Rh7BG000400
rosa_wichuraiana	Rw4G020730 Rw6G017020 Rw6G031090 Rw7G015830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1875
Acc36I	ACCTGC	1 cut(s)	883
AccB7I	CCANNNNNTGG	2 cut(s)	1238, 2379
AccBSI	CCGCTC	2 cut(s)	11, 152
AccI	GTMKAC	1 cut(s)	2591
AciI	CCGC	5 cut(s)	9, 150, 857, 2501, 2531
AclWI	GGATC	5 cut(s)	405, 1079, 1455, 1501, 2138
AcsI	RAATTY	6 cut(s)	247, 540, 1056, 1625, 1652, 1964
AcuI	CTGAAG	5 cut(s)	246, 999, 1134, 1797, 2061
AdeI	CACNNNGTG	1 cut(s)	1943
AfaI	GTAC	8 cut(s)	735, 838, 929, 968, 1839, 2019, 2074, 2607
AfiI	CCNNNNNNNGG	4 cut(s)	108, 1238, 1291, 2379
AflII	CTTAAG	2 cut(s)	401, 1969
AflIII	ACRYGT	1 cut(s)	1937
AgeI	ACCGGT	1 cut(s)	1502
AgsI	TTSAA	9 cut(s)	473, 530, 709, 1542, 1661, 2153, 2363, 2522, 2639
AjnI	CCWGG	1 cut(s)	1709
AjuI	GAANNNNNNNTTGG	2 cut(s)	1614, 1646
AloI	GAACNNNNNNTCC	2 cut(s)	1070, 1102
Alw21I	GWGCWC	5 cut(s)	99, 356, 1259, 1646, 2067
Alw26I	GTCTC	3 cut(s)	878, 1376, 1526
Alw44I	GTGCAC	1 cut(s)	1255
AlwI	GGATC	5 cut(s)	405, 1079, 1455, 1501, 2138
AoxI	GGCC	2 cut(s)	1012, 2331
ApaLI	GTGCAC	1 cut(s)	1255
ApeKI	GCWGC	7 cut(s)	1157, 1799, 1982, 2231, 2441, 2444, 2601
ApoI	RAATTY	6 cut(s)	247, 540, 1056, 1625, 1652, 1964
AseI	ATTAAT	1 cut(s)	210
AsiGI	ACCGGT	1 cut(s)	1502
Asp700I	GAANNNNTTC	1 cut(s)	1471
AspA2I	CCTAGG	1 cut(s)	1285
AspLEI	GCGC	4 cut(s)	336, 498, 1162, 2171
AspS9I	GGNCC	3 cut(s)	790, 1247, 1308
AsuHPI	GGTGA	2 cut(s)	417, 2197
AsuII	TTCGAA	2 cut(s)	627, 1210
AvaII	GGWCC	3 cut(s)	790, 1247, 1308
AvrII	CCTAGG	1 cut(s)	1285
AxyI	CCTNAGG	1 cut(s)	429
BaeGI	GKGCMC	2 cut(s)	1259, 2370
BaeI	ACNNNNGTAYC	2 cut(s)	600, 633
BanII	GRGCYC	2 cut(s)	1646, 2067
BauI	CACGAG	1 cut(s)	879
BbsI	GAAGAC	2 cut(s)	289, 1556
Bbv12I	GWGCWC	5 cut(s)	99, 356, 1259, 1646, 2067
BbvCI	CCTCAGC	1 cut(s)	2421
BbvI	GCAGC	7 cut(s)	1144, 1811, 1994, 2218, 2431, 2453, 2613
BccI	CCATC	6 cut(s)	176, 318, 476, 1240, 1438, 2410
BceAI	ACGGC	1 cut(s)	391
BcgI	CGANNNNNNTGC	2 cut(s)	2223, 2257
BciT130I	CCWGG	1 cut(s)	1711
BciVI	GTATCC	2 cut(s)	601, 2078
BcoDI	GTCTC	3 cut(s)	878, 1376, 1526
BfaI	CTAG	8 cut(s)	231, 773, 908, 1286, 1418, 1647, 1671, 2573
BfmI	CTRYAG	6 cut(s)	88, 2139, 2232, 2397, 2445, 2592
BfoI	RGCGCY	1 cut(s)	2172
BfrI	CTTAAG	2 cut(s)	401, 1969
BfuAI	ACCTGC	1 cut(s)	883
BfuI	GTATCC	2 cut(s)	601, 2078
BglII	AGATCT	2 cut(s)	1269, 1675
BisI	GCNGC	7 cut(s)	1158, 1800, 1983, 2232, 2442, 2445, 2602
BlnI	CCTAGG	1 cut(s)	1285
BlsI	GCNGC	7 cut(s)	1159, 1801, 1984, 2233, 2443, 2446, 2603
Bme1390I	CCNGG	1 cut(s)	1711
Bme18I	GGWCC	3 cut(s)	790, 1247, 1308
BmgT120I	GGNCC	3 cut(s)	790, 1247, 1308
BmiI	GGNNCC	3 cut(s)	1137, 1310, 2178
BmrFI	CCNGG	1 cut(s)	1711
BmrI	ACTGGG	1 cut(s)	2307
BmsI	GCATC	4 cut(s)	337, 587, 756, 2568
BmuI	ACTGGG	1 cut(s)	2307
BpiI	GAAGAC	2 cut(s)	289, 1556
Bpu10I	CCTNAGC	1 cut(s)	2421
Bpu14I	TTCGAA	2 cut(s)	627, 1210
BpuEI	CTTGAG	2 cut(s)	575, 2539
Bsa29I	ATCGAT	1 cut(s)	2562
BsaAI	YACGTR	1 cut(s)	1940
BsaJI	CCNNGG	6 cut(s)	1237, 1285, 1709, 1710, 2172, 2181
BsaWI	WCCGGW	4 cut(s)	204, 296, 1502, 1886
BsaXI	ACNNNNNCTCC	4 cut(s)	2049, 2079, 2231, 2261
Bsc4I	CCNNNNNNNGG	4 cut(s)	108, 1238, 1291, 2379
Bse118I	RCCGGY	1 cut(s)	1502
Bse1I	ACTGG	2 cut(s)	441, 2313
Bse21I	CCTNAGG	1 cut(s)	429
Bse3DI	GCAATG	4 cut(s)	873, 887, 1575, 2028
BseBI	CCWGG	1 cut(s)	1711
BseCI	ATCGAT	1 cut(s)	2562
BseDI	CCNNGG	6 cut(s)	1237, 1285, 1709, 1710, 2172, 2181
BseGI	GGATG	8 cut(s)	154, 187, 364, 373, 520, 930, 1084, 1232
BseLI	CCNNNNNNNGG	4 cut(s)	108, 1238, 1291, 2379
BseMI	GCAATG	4 cut(s)	873, 887, 1575, 2028
BseMII	CTCAG	6 cut(s)	176, 420, 1472, 1597, 2412, 2466
BseNI	ACTGG	2 cut(s)	441, 2313
BseRI	GAGGAG	4 cut(s)	150, 653, 656, 894
BseSI	GKGCMC	2 cut(s)	1259, 2370
BseXI	GCAGC	7 cut(s)	1144, 1811, 1994, 2218, 2431, 2453, 2613
BseYI	CCCAGC	1 cut(s)	697
BsgI	GTGCAG	1 cut(s)	1445
BshFI	GGCC	2 cut(s)	1014, 2333
BshTI	ACCGGT	1 cut(s)	1502
BshVI	ATCGAT	1 cut(s)	2562
BsiHKAI	GWGCWC	5 cut(s)	99, 356, 1259, 1646, 2067
BsiSI	CCGG	5 cut(s)	179, 205, 297, 1503, 1887
BslFI	GGGAC	1 cut(s)	80
BslI	CCNNNNNNNGG	4 cut(s)	108, 1238, 1291, 2379
BsmAI	GTCTC	3 cut(s)	878, 1376, 1526
BsmFI	GGGAC	1 cut(s)	80
BsmI	GAATGC	2 cut(s)	41, 2645
BsnI	GGCC	2 cut(s)	1014, 2333
Bsp119I	TTCGAA	2 cut(s)	627, 1210
Bsp1286I	GDGCHC	6 cut(s)	99, 356, 1259, 1646, 2067, 2370
Bsp1407I	TGTACA	2 cut(s)	733, 966
BspACI	CCGC	5 cut(s)	9, 150, 857, 2501, 2531
BspANI	GGCC	2 cut(s)	1014, 2333
BspCNI	CTCAG	6 cut(s)	175, 421, 1471, 1596, 2413, 2467
BspDI	ATCGAT	1 cut(s)	2562
BspLI	GGNNCC	3 cut(s)	1137, 1310, 2178
BspMAI	CTGCAG	2 cut(s)	2236, 2449
BspMI	ACCTGC	1 cut(s)	883
BspPI	GGATC	5 cut(s)	405, 1079, 1455, 1501, 2138
BspT104I	TTCGAA	2 cut(s)	627, 1210
BspTI	CTTAAG	2 cut(s)	401, 1969
BsrBI	CCGCTC	2 cut(s)	11, 152
BsrDI	GCAATG	4 cut(s)	873, 887, 1575, 2028
BsrFI	RCCGGY	1 cut(s)	1502
BsrGI	TGTACA	2 cut(s)	733, 966
BsrI	ACTGG	2 cut(s)	441, 2313
BssAI	RCCGGY	1 cut(s)	1502
BssECI	CCNNGG	6 cut(s)	1237, 1285, 1709, 1710, 2172, 2181
BssSI	CACGAG	1 cut(s)	879
BssT1I	CCWWGG	4 cut(s)	1237, 1285, 2172, 2181
Bst2BI	CACGAG	1 cut(s)	879
Bst2UI	CCWGG	1 cut(s)	1711
Bst4CI	ACNGT	9 cut(s)	89, 601, 658, 1105, 1145, 1384, 1555, 1747, 1917
Bst6I	CTCTTC	4 cut(s)	717, 997, 1061, 1434
BstAFI	CTTAAG	2 cut(s)	401, 1969
BstAPI	GCANNNNNTGC	1 cut(s)	1577
BstAUI	TGTACA	2 cut(s)	733, 966
BstBAI	YACGTR	1 cut(s)	1940
BstBI	TTCGAA	2 cut(s)	627, 1210
BstDEI	CTNAG	9 cut(s)	162, 429, 684, 990, 1090, 1458, 1583, 2421, 2475
BstF5I	GGATG	8 cut(s)	154, 187, 364, 373, 520, 930, 1084, 1232
BstH2I	RGCGCY	1 cut(s)	2172
BstHHI	GCGC	4 cut(s)	336, 498, 1162, 2171
BstMAI	GTCTC	3 cut(s)	878, 1376, 1526
BstMWI	GCNNNNNNNGC	8 cut(s)	113, 149, 473, 908, 1577, 1641, 2441, 2610
BstNI	CCWGG	1 cut(s)	1711
BstNSI	RCATGY	6 cut(s)	835, 853, 1838, 1931, 2219, 2553
BstSCI	CCNGG	1 cut(s)	1709
BstSFI	CTRYAG	6 cut(s)	88, 2139, 2232, 2397, 2445, 2592
BstSLI	GKGCMC	2 cut(s)	1259, 2370
BstV1I	GCAGC	7 cut(s)	1144, 1811, 1994, 2218, 2431, 2453, 2613
BstV2I	GAAGAC	2 cut(s)	289, 1556
BstX2I	RGATCY	6 cut(s)	397, 1269, 1447, 1493, 1675, 2143
BstYI	RGATCY	6 cut(s)	397, 1269, 1447, 1493, 1675, 2143
Bsu15I	ATCGAT	1 cut(s)	2562
Bsu36I	CCTNAGG	1 cut(s)	429
BsuI	GTATCC	2 cut(s)	601, 2078
BsuRI	GGCC	2 cut(s)	1014, 2333
BsuTUI	ATCGAT	1 cut(s)	2562
BtsCI	GGATG	8 cut(s)	154, 187, 364, 373, 520, 930, 1084, 1232
BtsI	GCAGTG	1 cut(s)	505
BtsIMutI	CAGTG	5 cut(s)	170, 505, 1773, 1922, 2127
BveI	ACCTGC	1 cut(s)	883
CfoI	GCGC	4 cut(s)	336, 498, 1162, 2171
Cfr10I	RCCGGY	1 cut(s)	1502
Cfr13I	GGNCC	3 cut(s)	790, 1247, 1308
ClaI	ATCGAT	1 cut(s)	2562
CseI	GACGC	2 cut(s)	77, 1403
Csp6I	GTAC	8 cut(s)	734, 837, 928, 967, 1838, 2018, 2073, 2606
CspAI	ACCGGT	1 cut(s)	1502
CviQI	GTAC	8 cut(s)	734, 837, 928, 967, 1838, 2018, 2073, 2606
DdeI	CTNAG	9 cut(s)	162, 429, 684, 990, 1090, 1458, 1583, 2421, 2475
DraI	TTTAAA	1 cut(s)	2226
DraIII	CACNNNGTG	1 cut(s)	1943
Eam1104I	CTCTTC	4 cut(s)	717, 997, 1061, 1434
EarI	CTCTTC	4 cut(s)	717, 997, 1061, 1434
Ecl136II	GAGCTC	2 cut(s)	1644, 2065
Eco130I	CCWWGG	4 cut(s)	1237, 1285, 2172, 2181
Eco147I	AGGCCT	1 cut(s)	1014
Eco24I	GRGCYC	2 cut(s)	1646, 2067
Eco47I	GGWCC	3 cut(s)	790, 1247, 1308
Eco53kI	GAGCTC	2 cut(s)	1644, 2065
Eco57I	CTGAAG	5 cut(s)	246, 999, 1134, 1797, 2061
Eco81I	CCTNAGG	1 cut(s)	429
EcoICRI	GAGCTC	2 cut(s)	1644, 2065
EcoRI	GAATTC	1 cut(s)	247
EcoRII	CCWGG	1 cut(s)	1709
EcoT14I	CCWWGG	4 cut(s)	1237, 1285, 2172, 2181
EcoT22I	ATGCAT	2 cut(s)	1762, 1836
EcoT38I	GRGCYC	2 cut(s)	1646, 2067
ErhI	CCWWGG	4 cut(s)	1237, 1285, 2172, 2181
FalI	AAGNNNNNCTT	2 cut(s)	2291, 2323
FaqI	GGGAC	1 cut(s)	80
FblI	GTMKAC	1 cut(s)	2591
Fnu4HI	GCNGC	7 cut(s)	1158, 1800, 1983, 2232, 2442, 2445, 2602
FokI	GGATG	8 cut(s)	141, 194, 371, 380, 507, 937, 1091, 1219
FriOI	GRGCYC	2 cut(s)	1646, 2067
Fsp4HI	GCNGC	7 cut(s)	1158, 1800, 1983, 2232, 2442, 2445, 2602
FspBI	CTAG	8 cut(s)	231, 773, 908, 1286, 1418, 1647, 1671, 2573
GlaI	GCGC	4 cut(s)	335, 497, 1161, 2170
GluI	GCNGC	7 cut(s)	1158, 1800, 1983, 2232, 2442, 2445, 2602
GsaI	CCCAGC	1 cut(s)	701
HaeII	RGCGCY	1 cut(s)	2172
HaeIII	GGCC	2 cut(s)	1014, 2333
HapII	CCGG	5 cut(s)	179, 205, 297, 1503, 1887
HgaI	GACGC	2 cut(s)	77, 1403
HhaI	GCGC	4 cut(s)	336, 498, 1162, 2171
Hin6I	GCGC	4 cut(s)	334, 496, 1160, 2169
HinP1I	GCGC	4 cut(s)	334, 496, 1160, 2169
HincII	GTYRAC	1 cut(s)	1183
HindII	GTYRAC	1 cut(s)	1183
HindIII	AAGCTT	1 cut(s)	258
HinfI	GANTC	8 cut(s)	123, 383, 569, 728, 822, 1302, 2036, 2240
HpaI	GTTAAC	1 cut(s)	1183
HpaII	CCGG	5 cut(s)	179, 205, 297, 1503, 1887
HphI	GGTGA	2 cut(s)	417, 2197
Hpy166II	GTNNAC	4 cut(s)	969, 1183, 1257, 2592
Hpy188I	TCNGA	9 cut(s)	265, 358, 489, 794, 1452, 1461, 1734, 1905, 2041
Hpy188III	TCNNGA	8 cut(s)	380, 582, 1306, 1418, 1542, 1585, 1647, 2636
Hpy8I	GTNNAC	4 cut(s)	969, 1183, 1257, 2592
HpyAV	CCTTC	7 cut(s)	24, 668, 767, 970, 2104, 2357, 2516
HpyCH4III	ACNGT	9 cut(s)	89, 601, 658, 1105, 1145, 1384, 1555, 1747, 1917
HpyCH4IV	ACGT	1 cut(s)	1939
HpyF10VI	GCNNNNNNNGC	8 cut(s)	113, 149, 473, 908, 1577, 1641, 2441, 2610
HpyF3I	CTNAG	9 cut(s)	162, 429, 684, 990, 1090, 1458, 1583, 2421, 2475
HpySE526I	ACGT	1 cut(s)	1939
HspAI	GCGC	4 cut(s)	334, 496, 1160, 2169
KspAI	GTTAAC	1 cut(s)	1183
LmnI	GCTCC	7 cut(s)	16, 121, 907, 1241, 1975, 2070, 2182
Lsp1109I	GCAGC	7 cut(s)	1144, 1811, 1994, 2218, 2431, 2453, 2613
LweI	GCATC	4 cut(s)	337, 587, 756, 2568
MaeI	CTAG	8 cut(s)	231, 773, 908, 1286, 1418, 1647, 1671, 2573
MaeII	ACGT	1 cut(s)	1939
MaeIII	GTNAC	4 cut(s)	619, 1498, 2247, 2425
MbiI	CCGCTC	2 cut(s)	11, 152
MflI	RGATCY	6 cut(s)	397, 1269, 1447, 1493, 1675, 2143
MhlI	GDGCHC	6 cut(s)	99, 356, 1259, 1646, 2067, 2370
MlyI	GAGTC	3 cut(s)	132, 816, 2249
MmeI	TCCRAC	3 cut(s)	224, 540, 921
Mph1103I	ATGCAT	2 cut(s)	1762, 1836
MroXI	GAANNNNTTC	1 cut(s)	1471
MseI	TTAA	9 cut(s)	128, 210, 291, 402, 459, 1182, 1563, 1970, 2225
MslI	CAYNNNNRTG	3 cut(s)	349, 1482, 2291
MspA1I	CMGCKG	1 cut(s)	2444
MspCI	CTTAAG	2 cut(s)	401, 1969
MspI	CCGG	5 cut(s)	179, 205, 297, 1503, 1887
MspR9I	CCNGG	1 cut(s)	1711
Mva1269I	GAATGC	2 cut(s)	41, 2645
MvaI	CCWGG	1 cut(s)	1711
MwoI	GCNNNNNNNGC	8 cut(s)	113, 149, 473, 908, 1577, 1641, 2441, 2610
NlaIV	GGNNCC	3 cut(s)	1137, 1310, 2178
NmuCI	GTSAC	1 cut(s)	2247
NsiI	ATGCAT	2 cut(s)	1762, 1836
NspI	RCATGY	6 cut(s)	835, 853, 1838, 1931, 2219, 2553
NspV	TTCGAA	2 cut(s)	627, 1210
PaeI	GCATGC	1 cut(s)	2553
PasI	CCCWGGG	1 cut(s)	1710
PceI	AGGCCT	1 cut(s)	1014
PctI	GAATGC	2 cut(s)	41, 2645
PdmI	GAANNNNTTC	1 cut(s)	1471
PfeI	GAWTC	5 cut(s)	383, 569, 728, 1302, 2036
PflMI	CCANNNNNTGG	2 cut(s)	1238, 2379
PinAI	ACCGGT	1 cut(s)	1502
PkrI	GCNGC	7 cut(s)	1159, 1801, 1984, 2233, 2443, 2446, 2603
PleI	GAGTC	3 cut(s)	131, 816, 2248
PpsI	GAGTC	3 cut(s)	131, 816, 2248
Ppu21I	YACGTR	1 cut(s)	1940
PshBI	ATTAAT	1 cut(s)	210
PsiI	TTATAA	1 cut(s)	1875
Psp124BI	GAGCTC	2 cut(s)	1646, 2067
Psp6I	CCWGG	1 cut(s)	1709
PspFI	CCCAGC	1 cut(s)	697
PspGI	CCWGG	1 cut(s)	1709
PspN4I	GGNNCC	3 cut(s)	1137, 1310, 2178
PspPI	GGNCC	3 cut(s)	790, 1247, 1308
PstI	CTGCAG	2 cut(s)	2236, 2449
PsuI	RGATCY	6 cut(s)	397, 1269, 1447, 1493, 1675, 2143
PvuII	CAGCTG	1 cut(s)	2444
RsaI	GTAC	8 cut(s)	735, 838, 929, 968, 1839, 2019, 2074, 2607
RsaNI	GTAC	8 cut(s)	734, 837, 928, 967, 1838, 2018, 2073, 2606
RseI	CAYNNNNRTG	3 cut(s)	349, 1482, 2291
SacI	GAGCTC	2 cut(s)	1646, 2067
SaqAI	TTAA	9 cut(s)	128, 210, 291, 402, 459, 1182, 1563, 1970, 2225
SatI	GCNGC	7 cut(s)	1158, 1800, 1983, 2232, 2442, 2445, 2602
Sau96I	GGNCC	3 cut(s)	790, 1247, 1308
SchI	GAGTC	3 cut(s)	132, 816, 2249
ScrFI	CCNGG	1 cut(s)	1711
SduI	GDGCHC	6 cut(s)	99, 356, 1259, 1646, 2067, 2370
SfaNI	GCATC	4 cut(s)	337, 587, 756, 2568
SfcI	CTRYAG	6 cut(s)	88, 2139, 2232, 2397, 2445, 2592
SfuI	TTCGAA	2 cut(s)	627, 1210
SinI	GGWCC	3 cut(s)	790, 1247, 1308
SmiMI	CAYNNNNRTG	3 cut(s)	349, 1482, 2291
SmlI	CTYRAG	4 cut(s)	401, 554, 1969, 2554
SmoI	CTYRAG	4 cut(s)	401, 554, 1969, 2554
SphI	GCATGC	1 cut(s)	2553
SseBI	AGGCCT	1 cut(s)	1014
SsiI	CCGC	5 cut(s)	9, 150, 857, 2501, 2531
SspMI	CTAG	8 cut(s)	231, 773, 908, 1286, 1418, 1647, 1671, 2573
SstI	GAGCTC	2 cut(s)	1646, 2067
StuI	AGGCCT	1 cut(s)	1014
StyD4I	CCNGG	1 cut(s)	1709
StyI	CCWWGG	4 cut(s)	1237, 1285, 2172, 2181
TaaI	ACNGT	9 cut(s)	89, 601, 658, 1105, 1145, 1384, 1555, 1747, 1917
TaiI	ACGT	1 cut(s)	1942
TatI	WGTACW	4 cut(s)	733, 966, 1837, 2017
TfiI	GAWTC	5 cut(s)	383, 569, 728, 1302, 2036
Tru1I	TTAA	9 cut(s)	128, 210, 291, 402, 459, 1182, 1563, 1970, 2225
Tru9I	TTAA	9 cut(s)	128, 210, 291, 402, 459, 1182, 1563, 1970, 2225
TscAI	CASTG	5 cut(s)	170, 505, 1780, 1922, 2127
TseFI	GTSAC	1 cut(s)	2247
TseI	GCWGC	7 cut(s)	1157, 1799, 1982, 2231, 2441, 2444, 2601
Tsp45I	GTSAC	1 cut(s)	2247
TspRI	CASTG	5 cut(s)	170, 505, 1780, 1922, 2127
Van91I	CCANNNNNTGG	2 cut(s)	1238, 2379
Vha464I	CTTAAG	2 cut(s)	401, 1969
VneI	GTGCAC	1 cut(s)	1255
VpaK11BI	GGWCC	3 cut(s)	790, 1247, 1308
VspI	ATTAAT	1 cut(s)	210
XapI	RAATTY	6 cut(s)	247, 540, 1056, 1625, 1652, 1964
XbaI	TCTAGA	2 cut(s)	1417, 1646
XceI	RCATGY	6 cut(s)	835, 853, 1838, 1931, 2219, 2553
XmaJI	CCTAGG	1 cut(s)	1285
XmiI	GTMKAC	1 cut(s)	2591
XmnI	GAANNNNTTC	1 cut(s)	1471
XspI	CTAG	8 cut(s)	231, 773, 908, 1286, 1418, 1647, 1671, 2573
Zsp2I	ATGCAT	2 cut(s)	1762, 1836

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.