Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003029

Physical Location & Seq

Genomic Coordinates Forward (+)

10287486 .. 10288056

Gene Structure 571 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0066800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGGACGTGTACAGTCTTCCAGTGCCAGGATCAGGTGGAAAGACTTGCTCGCAGATATTTGAGGAAGCTGGTTGTGACACACCTGCAAATCCCACTTGTGGTGCTTGCATGGGTGGTCCTAGAGACACTTATGCTCGCTTGAATGAACCACAGGTATGTGTCTCTACTACGAACAGGAACTTCCCCGGCAGAATGGGCCACAAGGAAGGCCAGATATATCTTGCTTCACCATATACAGCTGCAGCATCTGCTTTGACCGGTTATGTCACCGACCCAAGAGAGTTTTTGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008893 GO:0009507 GO:0009536 GO:0009611 GO:0009987 GO:0010150 GO:0015979 GO:0016787 GO:0016788 GO:0016794 GO:0032501 GO:0032502 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko00230 map00230

Pfam Domains

Protein Families

HD_4 RelA_SpoT TGS

Protein Analysis

97

Amino Acids

10.3

Weight (kDa)

5.15

Isoelectric Point (pI)

39.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aconitase	PF00330	17 - 87	4.5e-16	Aconitase family (aconitate hydratase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02260 AT4G02260 AT4G02260 AT4G02260
fragaria_vesca	FvH4_2g26030 FvH4_2g26030 FvH4_3g31250
malus_domestica	MD03G1291500.v1.1 MD11G1306700.v1.1
prunus_persica	Prupe.8G264600_v2.0.a1
pyrus_communis	pycom03g23090 pycom11g26840
rosa_chinensis	RchiOBHm_Chr6g0294391
rosa_laevigata	RLG00000011874
rosa_multiflora	Rmu_co8168868.1_g000001 Rmu_sc0000276.1_g000002 Rmu_sc0024449.1_g000001 Rmu_sc0030396.1_g000001
rosa_roxburghii	Rroxscaffold_4G00298810 Rroxscaffold_7G00173410
rosa_rugosa	Rorug04G0066700 Rorug04G0066800 Rorug04G0066900 Rorug04G0066900 Rorug04G0067000 Rorug04G0067100 Rorug06G0244100 Rorug06G0244200
rosa_samantha	Rh4AG095600 Rh6AG356700 Rh6BG363400 Rh6CG370700 Rh6DG357400 Rh7BG000400
rosa_wichuraiana	Rw4G020730 Rw6G017020 Rw6G031090 Rw7G015830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	91
Acc36I	ACCTGC	1 cut(s)	91
AclWI	GGATC	1 cut(s)	37
AfaI	GTAC	1 cut(s)	11
AfiI	CCNNNNNNNGG	3 cut(s)	26, 32, 98
AflIII	ACRYGT	1 cut(s)	6
AgeI	ACCGGT	1 cut(s)	257
AgsI	TTSAA	1 cut(s)	142
AjiI	CACGTC	1 cut(s)	7
AjnI	CCWGG	1 cut(s)	25
AluBI	AGCT	2 cut(s)	68, 239
AluI	AGCT	2 cut(s)	68, 239
Alw26I	GTCTC	2 cut(s)	117, 166
AlwI	GGATC	1 cut(s)	37
AlwNI	CAGNNNCTG	1 cut(s)	248
AoxI	GGCC	2 cut(s)	196, 208
ApeKI	GCWGC	2 cut(s)	239, 242
AsiGI	ACCGGT	1 cut(s)	257
AspS9I	GGNCC	2 cut(s)	116, 196
AsuC2I	CCSGG	1 cut(s)	186
AsuHPI	GGTGA	2 cut(s)	219, 259
AvaII	GGWCC	1 cut(s)	116
BbsI	GAAGAC	1 cut(s)	8
BbvI	GCAGC	2 cut(s)	226, 254
BciT130I	CCWGG	1 cut(s)	27
BcnI	CCSGG	1 cut(s)	186
BcoDI	GTCTC	2 cut(s)	117, 166
BfaI	CTAG	1 cut(s)	120
BfmI	CTRYAG	1 cut(s)	240
BfuAI	ACCTGC	1 cut(s)	91
BisI	GCNGC	2 cut(s)	240, 243
BlsI	GCNGC	2 cut(s)	241, 244
Bme1390I	CCNGG	2 cut(s)	27, 186
Bme18I	GGWCC	1 cut(s)	116
BmgBI	CACGTC	1 cut(s)	7
BmgT120I	GGNCC	2 cut(s)	116, 196
BmrFI	CCNGG	2 cut(s)	27, 186
BmsI	GCATC	1 cut(s)	254
BpiI	GAAGAC	1 cut(s)	8
BpuMI	CCSGG	1 cut(s)	186
BsaJI	CCNNGG	1 cut(s)	184
BsaWI	WCCGGW	1 cut(s)	257
Bsc4I	CCNNNNNNNGG	3 cut(s)	26, 32, 98
Bse118I	RCCGGY	1 cut(s)	257
Bse1I	ACTGG	1 cut(s)	20
BseBI	CCWGG	1 cut(s)	27
BseDI	CCNNGG	1 cut(s)	184
BseLI	CCNNNNNNNGG	3 cut(s)	26, 32, 98
BseNI	ACTGG	1 cut(s)	20
BseXI	GCAGC	2 cut(s)	226, 254
BshFI	GGCC	2 cut(s)	198, 210
BshTI	ACCGGT	1 cut(s)	257
BsiSI	CCGG	2 cut(s)	186, 258
BslI	CCNNNNNNNGG	3 cut(s)	26, 32, 98
BsmAI	GTCTC	2 cut(s)	117, 166
BsnI	GGCC	2 cut(s)	198, 210
Bsp1407I	TGTACA	1 cut(s)	9
Bsp143I	GATC	1 cut(s)	29
BspANI	GGCC	2 cut(s)	198, 210
BspMAI	CTGCAG	1 cut(s)	244
BspMI	ACCTGC	1 cut(s)	91
BspPI	GGATC	1 cut(s)	37
BsrFI	RCCGGY	1 cut(s)	257
BsrGI	TGTACA	1 cut(s)	9
BsrI	ACTGG	1 cut(s)	20
BssAI	RCCGGY	1 cut(s)	257
BssECI	CCNNGG	1 cut(s)	184
BssMI	GATC	1 cut(s)	29
Bst2UI	CCWGG	1 cut(s)	27
Bst4CI	ACNGT	1 cut(s)	14
BstAPI	GCANNNNNTGC	1 cut(s)	248
BstAUI	TGTACA	1 cut(s)	9
BstC8I	GCNNGC	3 cut(s)	50, 106, 136
BstKTI	GATC	1 cut(s)	32
BstMAI	GTCTC	2 cut(s)	117, 166
BstMBI	GATC	1 cut(s)	29
BstMWI	GCNNNNNNNGC	2 cut(s)	195, 248
BstNI	CCWGG	1 cut(s)	27
BstSCI	CCNGG	2 cut(s)	25, 184
BstSFI	CTRYAG	1 cut(s)	240
BstV1I	GCAGC	2 cut(s)	226, 254
BstV2I	GAAGAC	1 cut(s)	8
BsuRI	GGCC	2 cut(s)	198, 210
BtrI	CACGTC	1 cut(s)	7
BtsIMutI	CAGTG	1 cut(s)	27
BveI	ACCTGC	1 cut(s)	91
Cac8I	GCNNGC	3 cut(s)	50, 106, 136
CaiI	CAGNNNCTG	1 cut(s)	248
Cfr10I	RCCGGY	1 cut(s)	257
Cfr13I	GGNCC	2 cut(s)	116, 196
Csp6I	GTAC	1 cut(s)	10
CspAI	ACCGGT	1 cut(s)	257
CviAII	CATG	1 cut(s)	109
CviJI	RGCY	4 cut(s)	68, 198, 210, 239
CviKI_1	RGCY	4 cut(s)	68, 198, 210, 239
CviQI	GTAC	1 cut(s)	10
DpnI	GATC	1 cut(s)	31
DpnII	GATC	1 cut(s)	29
Eco47I	GGWCC	1 cut(s)	116
EcoRII	CCWGG	1 cut(s)	25
FaeI	CATG	1 cut(s)	112
FaiI	YATR	7 cut(s)	110, 132, 157, 217, 232, 234, 264
FatI	CATG	1 cut(s)	108
Fnu4HI	GCNGC	2 cut(s)	240, 243
Fsp4HI	GCNGC	2 cut(s)	240, 243
FspBI	CTAG	1 cut(s)	120
GluI	GCNGC	2 cut(s)	240, 243
HaeIII	GGCC	2 cut(s)	198, 210
HapII	CCGG	2 cut(s)	186, 258
Hin1II	CATG	1 cut(s)	112
HpaII	CCGG	2 cut(s)	186, 258
HphI	GGTGA	2 cut(s)	219, 259
Hpy166II	GTNNAC	1 cut(s)	10
Hpy8I	GTNNAC	1 cut(s)	10
HpyAV	CCTTC	1 cut(s)	200
HpyCH4III	ACNGT	1 cut(s)	14
HpyCH4IV	ACGT	1 cut(s)	6
HpyCH4V	TGCA	4 cut(s)	86, 108, 242, 289
HpyF10VI	GCNNNNNNNGC	2 cut(s)	195, 248
HpySE526I	ACGT	1 cut(s)	6
Hsp92II	CATG	1 cut(s)	112
Kzo9I	GATC	1 cut(s)	29
Lsp1109I	GCAGC	2 cut(s)	226, 254
LweI	GCATC	1 cut(s)	254
MaeI	CTAG	1 cut(s)	120
MaeII	ACGT	1 cut(s)	6
MaeIII	GTNAC	2 cut(s)	74, 265
MalI	GATC	1 cut(s)	31
MboI	GATC	1 cut(s)	29
MboII	GAAGA	1 cut(s)	8
MnlI	CCTC	1 cut(s)	55
MslI	CAYNNNNRTG	1 cut(s)	154
MspA1I	CMGCKG	1 cut(s)	239
MspI	CCGG	2 cut(s)	186, 258
MspR9I	CCNGG	2 cut(s)	27, 186
MvaI	CCWGG	1 cut(s)	27
MwoI	GCNNNNNNNGC	2 cut(s)	195, 248
NciI	CCSGG	1 cut(s)	186
NdeII	GATC	1 cut(s)	29
NlaIII	CATG	1 cut(s)	112
NmuCI	GTSAC	2 cut(s)	74, 265
PaqCI	CACCTGC	1 cut(s)	91
PinAI	ACCGGT	1 cut(s)	257
PkrI	GCNGC	2 cut(s)	241, 244
Psp6I	CCWGG	1 cut(s)	25
PspGI	CCWGG	1 cut(s)	25
PspPI	GGNCC	2 cut(s)	116, 196
PstI	CTGCAG	1 cut(s)	244
PstNI	CAGNNNCTG	1 cut(s)	248
PvuII	CAGCTG	1 cut(s)	239
RsaI	GTAC	1 cut(s)	11
RsaNI	GTAC	1 cut(s)	10
RseI	CAYNNNNRTG	1 cut(s)	154
SatI	GCNGC	2 cut(s)	240, 243
Sau3AI	GATC	1 cut(s)	29
Sau96I	GGNCC	2 cut(s)	116, 196
ScrFI	CCNGG	2 cut(s)	27, 186
SetI	ASST	6 cut(s)	9, 37, 70, 85, 156, 241
SfaNI	GCATC	1 cut(s)	254
SfcI	CTRYAG	1 cut(s)	240
SinI	GGWCC	1 cut(s)	116
SmiMI	CAYNNNNRTG	1 cut(s)	154
SspMI	CTAG	1 cut(s)	120
StyD4I	CCNGG	2 cut(s)	25, 184
TaaI	ACNGT	1 cut(s)	14
TaiI	ACGT	1 cut(s)	9
TatI	WGTACW	1 cut(s)	9
TscAI	CASTG	1 cut(s)	27
TseFI	GTSAC	2 cut(s)	74, 265
TseI	GCWGC	2 cut(s)	239, 242
Tsp45I	GTSAC	2 cut(s)	74, 265
TspDTI	ATGAA	1 cut(s)	159
TspRI	CASTG	1 cut(s)	27
VpaK11BI	GGWCC	1 cut(s)	116
XspI	CTAG	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.