Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0003029

Physical Location & Seq

Genomic Coordinates Forward (+)

16148552 .. 16150523

Gene Structure 1972 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G015830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGCGACTCTGGTTCAACTCTGCCACAGCCTGCGCCTCTTCCCGATTCCACTTTCTTTCCAAATTAGGGATTTAGGTTTTCTTCTTTGTCTGATGAAGGAGGGACTGATGAATTTGATGCAGAGGTCGAAGGAGGGACTGATGAAGAAGGGACTGATGAATGAGATGCAGAGGTCGAAGGAGGGACTGATGAAGAAGATGCAGAGGAAGAAGATGGAGGTTTCAAAGTTGGGAAAGTTGAAATGTAAGGATGAACATGATTCTGTACAAGATGTAAAAGCAGATGACCTACGGAAGATGCTTCTAGCCATGACAGTGGAGGTCCGGGTTATCATTGTCAAGTTAGCTAACAGATTACATAACATACGCACTCTTTCACACATGCCTCCACATAAGCAGTCCAGCATTGCAAGGGAGACATTGCAGGTCTTTGCTCCTCTAGCAAAGTTGCTTGGGATGTACCAAATCAAGTATCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008893 GO:0009507 GO:0009536 GO:0009611 GO:0009987 GO:0010150 GO:0015979 GO:0016787 GO:0016788 GO:0016794 GO:0032501 GO:0032502 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko00230 map00230

Pfam Domains

Protein Families

HD_4 RelA_SpoT TGS

Protein Analysis

159

Amino Acids

18.41

Weight (kDa)

10.05

Isoelectric Point (pI)

43.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HD_4	PF13328	73 - 153	1.4e-21	HD domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02260 AT4G02260 AT4G02260 AT4G02260
fragaria_vesca	FvH4_2g26030 FvH4_2g26030 FvH4_3g31250
malus_domestica	MD03G1291500.v1.1 MD11G1306700.v1.1
prunus_persica	Prupe.8G264600_v2.0.a1
pyrus_communis	pycom03g23090 pycom11g26840
rosa_chinensis	RchiOBHm_Chr6g0294391
rosa_laevigata	RLG00000011874
rosa_multiflora	Rmu_co8168868.1_g000001 Rmu_sc0000276.1_g000002 Rmu_sc0024449.1_g000001 Rmu_sc0030396.1_g000001
rosa_roxburghii	Rroxscaffold_4G00298810 Rroxscaffold_7G00173410
rosa_rugosa	Rorug04G0066700 Rorug04G0066800 Rorug04G0066900 Rorug04G0066900 Rorug04G0067000 Rorug04G0067100 Rorug06G0244100 Rorug06G0244200
rosa_samantha	Rh4AG095600 Rh6AG356700 Rh6BG363400 Rh6CG370700 Rh6DG357400 Rh7BG000400
rosa_wichuraiana	Rw4G020730 Rw6G017020 Rw6G031090 Rw7G015830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	415
AcsI	RAATTY	1 cut(s)	112
AfaI	GTAC	2 cut(s)	267, 461
AfiI	CCNNNNNNNGG	1 cut(s)	67
AgsI	TTSAA	3 cut(s)	17, 225, 241
AluBI	AGCT	1 cut(s)	347
AluI	AGCT	1 cut(s)	347
Alw26I	GTCTC	1 cut(s)	410
ApoI	RAATTY	1 cut(s)	112
AspLEI	GCGC	1 cut(s)	36
AspS9I	GGNCC	1 cut(s)	322
AsuC2I	CCSGG	1 cut(s)	326
AvaII	GGWCC	1 cut(s)	322
BccI	CCATC	1 cut(s)	208
BcnI	CCSGG	1 cut(s)	326
BcoDI	GTCTC	1 cut(s)	410
BfaI	CTAG	2 cut(s)	305, 440
BfuAI	ACCTGC	1 cut(s)	415
Bme1390I	CCNGG	1 cut(s)	326
Bme18I	GGWCC	1 cut(s)	322
BmgT120I	GGNCC	1 cut(s)	322
BmrFI	CCNGG	1 cut(s)	326
BmsI	GCATC	4 cut(s)	108, 156, 189, 288
BpuMI	CCSGG	1 cut(s)	326
Bsc4I	CCNNNNNNNGG	1 cut(s)	67
Bse3DI	GCAATG	2 cut(s)	405, 419
BseGI	GGATG	2 cut(s)	256, 462
BseLI	CCNNNNNNNGG	1 cut(s)	67
BseMI	GCAATG	2 cut(s)	405, 419
BseRI	GAGGAG	1 cut(s)	426
BsiSI	CCGG	1 cut(s)	325
BslFI	GGGAC	4 cut(s)	117, 150, 165, 198
BslI	CCNNNNNNNGG	1 cut(s)	67
BsmAI	GTCTC	1 cut(s)	410
BsmFI	GGGAC	4 cut(s)	117, 150, 165, 198
Bsp1407I	TGTACA	1 cut(s)	265
BspMI	ACCTGC	1 cut(s)	415
BsrDI	GCAATG	2 cut(s)	405, 419
BsrGI	TGTACA	1 cut(s)	265
Bst4CI	ACNGT	1 cut(s)	316
Bst6I	CTCTTC	1 cut(s)	44
BstAUI	TGTACA	1 cut(s)	265
BstC8I	GCNNGC	1 cut(s)	32
BstF5I	GGATG	2 cut(s)	256, 462
BstHHI	GCGC	1 cut(s)	36
BstMAI	GTCTC	1 cut(s)	410
BstMWI	GCNNNNNNNGC	1 cut(s)	440
BstNSI	RCATGY	1 cut(s)	385
BstSCI	CCNGG	1 cut(s)	324
BstXI	CCANNNNNNTGG	1 cut(s)	316
BtsCI	GGATG	2 cut(s)	256, 462
BtsIMutI	CAGTG	1 cut(s)	321
BveI	ACCTGC	1 cut(s)	415
Cac8I	GCNNGC	1 cut(s)	32
CfoI	GCGC	1 cut(s)	36
Cfr13I	GGNCC	1 cut(s)	322
Csp6I	GTAC	2 cut(s)	266, 460
CviAII	CATG	3 cut(s)	257, 310, 382
CviJI	RGCY	3 cut(s)	30, 308, 347
CviKI_1	RGCY	3 cut(s)	30, 308, 347
CviQI	GTAC	2 cut(s)	266, 460
Eam1104I	CTCTTC	1 cut(s)	44
EarI	CTCTTC	1 cut(s)	44
Eco47I	GGWCC	1 cut(s)	322
FaeI	CATG	3 cut(s)	260, 313, 385
FaiI	YATR	7 cut(s)	258, 311, 360, 365, 383, 393, 478
FaqI	GGGAC	4 cut(s)	117, 150, 165, 198
FatI	CATG	3 cut(s)	256, 309, 381
FokI	GGATG	2 cut(s)	263, 469
FspBI	CTAG	2 cut(s)	305, 440
GlaI	GCGC	1 cut(s)	35
HapII	CCGG	1 cut(s)	325
HhaI	GCGC	1 cut(s)	36
Hin1II	CATG	3 cut(s)	260, 313, 385
Hin6I	GCGC	1 cut(s)	34
HinP1I	GCGC	1 cut(s)	34
HinfI	GANTC	3 cut(s)	7, 46, 260
HpaII	CCGG	1 cut(s)	325
Hpy188I	TCNGA	1 cut(s)	93
Hpy188III	TCNNGA	1 cut(s)	43
HpyAV	CCTTC	4 cut(s)	91, 124, 142, 172
HpyCH4III	ACNGT	1 cut(s)	316
HpyCH4V	TGCA	5 cut(s)	121, 169, 202, 410, 424
HpyF10VI	GCNNNNNNNGC	1 cut(s)	440
Hsp92II	CATG	3 cut(s)	260, 313, 385
HspAI	GCGC	1 cut(s)	34
LmnI	GCTCC	1 cut(s)	439
LpnPI	CCDG	4 cut(s)	44, 338, 410, 415
LweI	GCATC	4 cut(s)	108, 156, 189, 288
MaeI	CTAG	2 cut(s)	305, 440
MboII	GAAGA	8 cut(s)	31, 74, 157, 205, 208, 220, 223, 307
MluCI	AATT	2 cut(s)	63, 112
MslI	CAYNNNNRTG	1 cut(s)	314
MspI	CCGG	1 cut(s)	325
MspR9I	CCNGG	1 cut(s)	326
MwoI	GCNNNNNNNGC	1 cut(s)	440
NciI	CCSGG	1 cut(s)	326
NlaIII	CATG	3 cut(s)	260, 313, 385
NspI	RCATGY	1 cut(s)	385
PfeI	GAWTC	2 cut(s)	46, 260
PspPI	GGNCC	1 cut(s)	322
RsaI	GTAC	2 cut(s)	267, 461
RsaNI	GTAC	2 cut(s)	266, 460
RseI	CAYNNNNRTG	1 cut(s)	314
Sau96I	GGNCC	1 cut(s)	322
ScrFI	CCNGG	1 cut(s)	326
SetI	ASST	8 cut(s)	79, 128, 176, 222, 291, 324, 349, 429
SfaNI	GCATC	4 cut(s)	108, 156, 189, 288
SinI	GGWCC	1 cut(s)	322
SmiMI	CAYNNNNRTG	1 cut(s)	314
Sse9I	AATT	2 cut(s)	63, 112
SspMI	CTAG	2 cut(s)	305, 440
StyD4I	CCNGG	1 cut(s)	324
TaaI	ACNGT	1 cut(s)	316
TaqI	TCGA	2 cut(s)	128, 176
TasI	AATT	2 cut(s)	63, 112
TatI	WGTACW	1 cut(s)	265
TfiI	GAWTC	2 cut(s)	46, 260
TscAI	CASTG	1 cut(s)	321
TspDTI	ATGAA	6 cut(s)	110, 125, 158, 173, 206, 267
TspGWI	ACGGA	1 cut(s)	307
TspRI	CASTG	1 cut(s)	321
VpaK11BI	GGWCC	1 cut(s)	322
XapI	RAATTY	1 cut(s)	112
XceI	RCATGY	1 cut(s)	385
XspI	CTAG	2 cut(s)	305, 440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.