Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8168868.1

Orthogroup ID

OG0003029

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 671

Gene Structure 671 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8168868.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 521 bp

tcactgaccggaaaatcagcttttcagaggcataagcagtggttgcaacatgcaaaaacacgcagtgcccgacacaaaataatgaaattcttaagggagcaagctgccctatctgctgatgaaataacagcagataaagtaaatgacttcgttgctgattctgaagaagagagtgaagcagaagagctccccagtacctccaaaggatacaaagctttgtgggagaaaatgctggtgaatgttgtaggattggcattgccagaacgaagttccgaagatcccttccaaattaccaatggaaatgctcgggtttctgctcccaaggtgaacgggaaacataacaaacatgttcgacatgtgagtttgaaggctgagggggagttgttgtcgcaaggaaatggtgttgctagaatgttgcaagctaatattcctatgtacaaggaagccttgcccagtttagaaagttggcaagccagcaagattacctcttggcataatgttgaagggcactccatcctttg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008893 GO:0009507 GO:0009536 GO:0009611 GO:0009987 GO:0010150 GO:0015979 GO:0016787 GO:0016788 GO:0016794 GO:0032501 GO:0032502 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko00230 map00230

Pfam Domains

Protein Families

HD_4 RelA_SpoT TGS

Protein Analysis

173

Amino Acids

19.29

Weight (kDa)

8.81

Isoelectric Point (pI)

55.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02260 AT4G02260 AT4G02260 AT4G02260
fragaria_vesca	FvH4_2g26030 FvH4_2g26030 FvH4_3g31250
malus_domestica	MD03G1291500.v1.1 MD11G1306700.v1.1
prunus_persica	Prupe.8G264600_v2.0.a1
pyrus_communis	pycom03g23090 pycom11g26840
rosa_chinensis	RchiOBHm_Chr6g0294391
rosa_laevigata	RLG00000011874
rosa_multiflora	Rmu_co8168868.1_g000001 Rmu_sc0000276.1_g000002 Rmu_sc0024449.1_g000001 Rmu_sc0030396.1_g000001
rosa_roxburghii	Rroxscaffold_4G00298810 Rroxscaffold_7G00173410
rosa_rugosa	Rorug04G0066700 Rorug04G0066800 Rorug04G0066900 Rorug04G0066900 Rorug04G0067000 Rorug04G0067100 Rorug06G0244100 Rorug06G0244200
rosa_samantha	Rh4AG095600 Rh6AG356700 Rh6BG363400 Rh6CG370700 Rh6DG357400 Rh7BG000400
rosa_wichuraiana	Rw4G020730 Rw6G017020 Rw6G031090 Rw7G015830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	272
AcsI	RAATTY	1 cut(s)	86
AcuI	CTGAAG	1 cut(s)	183
AdeI	CACNNNGTG	1 cut(s)	65
AfaI	GTAC	2 cut(s)	196, 437
AflII	CTTAAG	1 cut(s)	91
AflIII	ACRYGT	2 cut(s)	346, 355
AgsI	TTSAA	2 cut(s)	367, 503
AluBI	AGCT	5 cut(s)	20, 104, 187, 215, 422
AluI	AGCT	5 cut(s)	20, 104, 187, 215, 422
Alw21I	GWGCWC	1 cut(s)	189
AlwI	GGATC	1 cut(s)	272
Ama87I	CYCGRG	1 cut(s)	306
ApeKI	GCWGC	1 cut(s)	104
ApoI	RAATTY	1 cut(s)	86
AsuHPI	GGTGA	2 cut(s)	247, 337
AvaI	CYCGRG	1 cut(s)	306
BaeGI	GKGCMC	2 cut(s)	70, 510
BanII	GRGCYC	1 cut(s)	189
Bbv12I	GWGCWC	1 cut(s)	189
BbvCI	CCTCAGC	1 cut(s)	372
BbvI	GCAGC	1 cut(s)	91
BciVI	GTATCC	1 cut(s)	200
BfaI	CTAG	1 cut(s)	408
BfrI	CTTAAG	1 cut(s)	91
BfuI	GTATCC	1 cut(s)	200
BisI	GCNGC	1 cut(s)	105
BlsI	GCNGC	1 cut(s)	106
BmeT110I	CYCGRG	1 cut(s)	306
BmrI	ACTGGG	2 cut(s)	186, 447
BmuI	ACTGGG	2 cut(s)	186, 447
Bpu10I	CCTNAGC	1 cut(s)	372
BsaJI	CCNNGG	1 cut(s)	321
BsaWI	WCCGGW	1 cut(s)	8
BsaXI	ACNNNNNCTCC	2 cut(s)	371, 401
Bse1I	ACTGG	2 cut(s)	192, 453
Bse3DI	GCAATG	1 cut(s)	254
BseDI	CCNNGG	1 cut(s)	321
BseGI	GGATG	1 cut(s)	513
BseMI	GCAATG	1 cut(s)	254
BseMII	CTCAG	1 cut(s)	363
BseNI	ACTGG	2 cut(s)	192, 453
BseSI	GKGCMC	2 cut(s)	70, 510
BseXI	GCAGC	1 cut(s)	91
BsiHKAI	GWGCWC	1 cut(s)	189
BsiHKCI	CYCGRG	1 cut(s)	306
BsiSI	CCGG	1 cut(s)	9
BsoBI	CYCGRG	1 cut(s)	306
Bsp1286I	GDGCHC	3 cut(s)	70, 189, 510
Bsp1407I	TGTACA	1 cut(s)	435
Bsp143I	GATC	1 cut(s)	277
BspCNI	CTCAG	1 cut(s)	364
BspPI	GGATC	1 cut(s)	272
BspQI	GCTCTTC	1 cut(s)	177
BspTI	CTTAAG	1 cut(s)	91
BsrDI	GCAATG	1 cut(s)	254
BsrGI	TGTACA	1 cut(s)	435
BsrI	ACTGG	2 cut(s)	192, 453
BssECI	CCNNGG	1 cut(s)	321
BssMI	GATC	1 cut(s)	277
BssT1I	CCWWGG	1 cut(s)	321
Bst6I	CTCTTC	2 cut(s)	162, 177
BstAFI	CTTAAG	1 cut(s)	91
BstAPI	GCANNNNNTGC	1 cut(s)	43
BstAUI	TGTACA	1 cut(s)	435
BstC8I	GCNNGC	4 cut(s)	102, 420, 471, 475
BstDEI	CTNAG	1 cut(s)	372
BstF5I	GGATG	1 cut(s)	513
BstKTI	GATC	1 cut(s)	280
BstMBI	GATC	1 cut(s)	277
BstMWI	GCNNNNNNNGC	2 cut(s)	43, 113
BstNSI	RCATGY	3 cut(s)	53, 350, 359
BstSLI	GKGCMC	2 cut(s)	70, 510
BstV1I	GCAGC	1 cut(s)	91
BstX2I	RGATCY	1 cut(s)	277
BstYI	RGATCY	1 cut(s)	277
BsuI	GTATCC	1 cut(s)	200
BtsCI	GGATG	1 cut(s)	513
BtsI	GCAGTG	2 cut(s)	44, 70
BtsIMutI	CAGTG	2 cut(s)	44, 70
Cac8I	GCNNGC	4 cut(s)	102, 420, 471, 475
Csp6I	GTAC	2 cut(s)	195, 436
CviAII	CATG	3 cut(s)	50, 347, 356
CviJI	RGCY	8 cut(s)	20, 104, 187, 215, 371, 422, 446, 473
CviKI_1	RGCY	8 cut(s)	20, 104, 187, 215, 371, 422, 446, 473
CviQI	GTAC	2 cut(s)	195, 436
DdeI	CTNAG	1 cut(s)	372
DpnI	GATC	1 cut(s)	279
DpnII	GATC	1 cut(s)	277
DraIII	CACNNNGTG	1 cut(s)	65
Eam1104I	CTCTTC	2 cut(s)	162, 177
EarI	CTCTTC	2 cut(s)	162, 177
Ecl136II	GAGCTC	1 cut(s)	187
Eco130I	CCWWGG	1 cut(s)	321
Eco24I	GRGCYC	1 cut(s)	189
Eco53kI	GAGCTC	1 cut(s)	187
Eco57I	CTGAAG	1 cut(s)	183
Eco88I	CYCGRG	1 cut(s)	306
EcoICRI	GAGCTC	1 cut(s)	187
EcoT14I	CCWWGG	1 cut(s)	321
EcoT38I	GRGCYC	1 cut(s)	189
ErhI	CCWWGG	1 cut(s)	321
FaeI	CATG	3 cut(s)	53, 350, 359
FaiI	YATR	7 cut(s)	33, 51, 339, 348, 357, 434, 495
FalI	AAGNNNNNCTT	2 cut(s)	431, 463
FatI	CATG	3 cut(s)	49, 346, 355
Fnu4HI	GCNGC	1 cut(s)	105
FokI	GGATG	1 cut(s)	500
FriOI	GRGCYC	1 cut(s)	189
Fsp4HI	GCNGC	1 cut(s)	105
FspBI	CTAG	1 cut(s)	408
GluI	GCNGC	1 cut(s)	105
HapII	CCGG	1 cut(s)	9
Hin1II	CATG	3 cut(s)	53, 350, 359
HindIII	AAGCTT	1 cut(s)	213
HinfI	GANTC	1 cut(s)	158
HpaII	CCGG	1 cut(s)	9
HphI	GGTGA	2 cut(s)	247, 337
Hpy166II	GTNNAC	1 cut(s)	328
Hpy188I	TCNGA	3 cut(s)	27, 163, 274
Hpy8I	GTNNAC	1 cut(s)	328
HpyAV	CCTTC	3 cut(s)	292, 361, 497
HpyCH4V	TGCA	3 cut(s)	46, 53, 418
HpyF10VI	GCNNNNNNNGC	2 cut(s)	43, 113
HpyF3I	CTNAG	1 cut(s)	372
Hsp92II	CATG	3 cut(s)	53, 350, 359
Kzo9I	GATC	1 cut(s)	277
LguI	GCTCTTC	1 cut(s)	177
LmnI	GCTCC	3 cut(s)	97, 192, 322
LpnPI	CCDG	6 cut(s)	22, 205, 218, 273, 466, 487
Lsp1109I	GCAGC	1 cut(s)	91
MaeI	CTAG	1 cut(s)	408
MalI	GATC	1 cut(s)	279
MboI	GATC	1 cut(s)	277
MboII	GAAGA	4 cut(s)	176, 179, 194, 287
MflI	RGATCY	1 cut(s)	277
MhlI	GDGCHC	3 cut(s)	70, 189, 510
MluCI	AATT	2 cut(s)	86, 288
MnlI	CCTC	4 cut(s)	21, 208, 367, 496
MseI	TTAA	1 cut(s)	92
MspCI	CTTAAG	1 cut(s)	91
MspI	CCGG	1 cut(s)	9
MwoI	GCNNNNNNNGC	2 cut(s)	43, 113
NdeII	GATC	1 cut(s)	277
NlaIII	CATG	3 cut(s)	53, 350, 359
NspI	RCATGY	3 cut(s)	53, 350, 359
PciI	ACATGT	2 cut(s)	346, 355
PciSI	GCTCTTC	1 cut(s)	177
PcsI	WCGNNNNNNNCGW	1 cut(s)	67
PfeI	GAWTC	1 cut(s)	158
PkrI	GCNGC	1 cut(s)	106
PscI	ACATGT	2 cut(s)	346, 355
Psp124BI	GAGCTC	1 cut(s)	189
PsuI	RGATCY	1 cut(s)	277
RsaI	GTAC	2 cut(s)	196, 437
RsaNI	GTAC	2 cut(s)	195, 436
SacI	GAGCTC	1 cut(s)	189
SapI	GCTCTTC	1 cut(s)	177
SaqAI	TTAA	1 cut(s)	92
SatI	GCNGC	1 cut(s)	105
Sau3AI	GATC	1 cut(s)	277
SduI	GDGCHC	3 cut(s)	70, 189, 510
SetI	ASST	8 cut(s)	22, 106, 189, 200, 217, 327, 424, 488
SmlI	CTYRAG	1 cut(s)	91
SmoI	CTYRAG	1 cut(s)	91
Sse9I	AATT	2 cut(s)	86, 288
SspI	AATATT	1 cut(s)	427
SspMI	CTAG	1 cut(s)	408
SstI	GAGCTC	1 cut(s)	189
StyI	CCWWGG	1 cut(s)	321
TaqI	TCGA	1 cut(s)	352
TasI	AATT	2 cut(s)	86, 288
TatI	WGTACW	1 cut(s)	435
TfiI	GAWTC	1 cut(s)	158
Tru1I	TTAA	1 cut(s)	92
Tru9I	TTAA	1 cut(s)	92
TscAI	CASTG	2 cut(s)	44, 70
TseI	GCWGC	1 cut(s)	104
TspDTI	ATGAA	2 cut(s)	98, 135
TspRI	CASTG	2 cut(s)	44, 70
Vha464I	CTTAAG	1 cut(s)	91
XapI	RAATTY	1 cut(s)	86
XceI	RCATGY	3 cut(s)	53, 350, 359
XcmI	CCANNNNNNNNNTGG	1 cut(s)	293
XspI	CTAG	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.