Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0024449.1

Orthogroup ID

OG0003029

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 4077

Gene Structure 4077 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0024449.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1545 bp

ttgcaggtctttgctcctctagcaaagttgcttgggatgtaccaaatcaagttggaacttgaaaacctttccttcatgtacacaaatcctgaagattatgcaaagatcaggagaaaagtggcagacctctacaaagagcatgagaaagaacttgtagaggccaacaaaattttggtgaagaagattgaggatgaccagttcttagaacttatgactgtgaaaactgaagttcgtgctgtatgcaaggaaccatacagtatctataaatctgttctcaaatctaaaggttcaattaatgaggtcaatcaaatagcacagcttcgtattgttatcaaaccaaagccatgccttggcggagggcctctgtgcaccccacagcagatttgctaccatgttcttgggttggttcatggaatctggacccctattcctcgaactatgaaagactatattgccacccccaaacctaatggctatcagagtctccagacaactgtaattcctttcttgtatgagagcatgttgcggcttgaagtgcagataaggacagaagagatggacctgatagcccaaagaggcattgcttcccattatagcgggagaggatttgttactggtttagttggacgcacaatccctagtggtagaagttcaagagggaagactgtctgccttaacaatgcaaacattgcactcagaattggctggctcaatgcaattagagaatggcaagaggagtttgttggcaacatgagctctagggaatttgtagaaactatcactagagatctattaggtagtcgtgtgtttgtgtttactccaaggggagagataaaaaatcttccaaaaggagcgactgttattgactacgcctatatgatacacactgaaattggcaacaaaatggtagcagcaaaggtgaacggtaatcttgtttctcctatgcatgtacttgcaaatgcggaagttgtggagatagtcacttacaattcactgaccggaaaatcagcttttcagaggcataagcagtggttgcaacatgcaaaaacacgcagtgcccgacacaaaataatgaaattcttaagggagcaagctgccctatctgctgatgaaataacagcagataaagtaaatgacttcgttgctgattctgaagaagagagtgaagcagaagagctccccagtacctccaaaggatacaaagctttgtgggagaaaatgctggtgaatgttgtaggattggcattgccagaacgaagttccgaagatcccttccaaattaccaatggaaatgctcgggtttctgctcccaaggtgaacgggaaacataacaaacatgttcgacatgtgagtttgaaggctgagggggagttgttgtcgcaaggaaatggtgttgctagaatgttgcaagctaatattcctatgtacaaggaagccttgcccagtttagaaagttggcaagccagcaagattacctcttggcataatgttgaagggcactccatcctttggttttccgtggtttccatcgatcgaaaaggttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008893 GO:0009507 GO:0009536 GO:0009611 GO:0009987 GO:0010150 GO:0015979 GO:0016787 GO:0016788 GO:0016794 GO:0032501 GO:0032502 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0090693 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko00230 map00230

Pfam Domains

Protein Families

HD_4 RelA_SpoT TGS

Protein Analysis

514

Amino Acids

57.8

Weight (kDa)

9.17

Isoelectric Point (pI)

43.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02260 AT4G02260 AT4G02260 AT4G02260
fragaria_vesca	FvH4_2g26030 FvH4_2g26030 FvH4_3g31250
malus_domestica	MD03G1291500.v1.1 MD11G1306700.v1.1
prunus_persica	Prupe.8G264600_v2.0.a1
pyrus_communis	pycom03g23090 pycom11g26840
rosa_chinensis	RchiOBHm_Chr6g0294391
rosa_laevigata	RLG00000011874
rosa_multiflora	Rmu_co8168868.1_g000001 Rmu_sc0000276.1_g000002 Rmu_sc0024449.1_g000001 Rmu_sc0030396.1_g000001
rosa_roxburghii	Rroxscaffold_4G00298810 Rroxscaffold_7G00173410
rosa_rugosa	Rorug04G0066700 Rorug04G0066800 Rorug04G0066900 Rorug04G0066900 Rorug04G0067000 Rorug04G0067100 Rorug06G0244100 Rorug06G0244200
rosa_samantha	Rh4AG095600 Rh6AG356700 Rh6BG363400 Rh6CG370700 Rh6DG357400 Rh7BG000400
rosa_wichuraiana	Rw4G020730 Rw6G017020 Rw6G031090 Rw7G015830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	350, 1509
AciI	CCGC	4 cut(s)	354, 526, 597, 962
AclWI	GGATC	1 cut(s)	1262
AcsI	RAATTY	3 cut(s)	168, 764, 1076
AcuI	CTGAAG	3 cut(s)	111, 246, 1173
AdeI	CACNNNGTG	1 cut(s)	1055
AfaI	GTAC	5 cut(s)	41, 80, 951, 1186, 1427
AfiI	CCNNNNNNNGG	2 cut(s)	350, 1509
AflII	CTTAAG	1 cut(s)	1081
AflIII	ACRYGT	2 cut(s)	1336, 1345
AgsI	TTSAA	6 cut(s)	62, 291, 533, 654, 1357, 1493
AloI	GAACNNNNNNTCC	2 cut(s)	182, 214
AluBI	AGCT	7 cut(s)	319, 756, 1010, 1094, 1177, 1205, 1412
AluI	AGCT	7 cut(s)	319, 756, 1010, 1094, 1177, 1205, 1412
Alw21I	GWGCWC	3 cut(s)	371, 758, 1179
Alw26I	GTCTC	1 cut(s)	488
Alw44I	GTGCAC	1 cut(s)	367
AlwI	GGATC	1 cut(s)	1262
Ama87I	CYCGRG	1 cut(s)	1296
AoxI	GGCC	2 cut(s)	159, 359
ApaLI	GTGCAC	1 cut(s)	367
ApeKI	GCWGC	2 cut(s)	911, 1094
ApoI	RAATTY	3 cut(s)	168, 764, 1076
AseI	ATTAAT	1 cut(s)	294
AspS9I	GGNCC	3 cut(s)	359, 420, 559
AsuHPI	GGTGA	4 cut(s)	187, 931, 1237, 1327
AvaI	CYCGRG	1 cut(s)	1296
AvaII	GGWCC	2 cut(s)	420, 559
BaeGI	GKGCMC	3 cut(s)	371, 1060, 1500
BanII	GRGCYC	2 cut(s)	758, 1179
BbsI	GAAGAC	1 cut(s)	668
Bbv12I	GWGCWC	3 cut(s)	371, 758, 1179
BbvCI	CCTCAGC	1 cut(s)	1362
BbvI	GCAGC	2 cut(s)	923, 1081
BccI	CCATC	3 cut(s)	550, 1511, 1535
BciVI	GTATCC	1 cut(s)	1190
BcoDI	GTCTC	1 cut(s)	488
BfaI	CTAG	5 cut(s)	20, 639, 759, 783, 1398
BfrI	CTTAAG	1 cut(s)	1081
BfuI	GTATCC	1 cut(s)	1190
BglII	AGATCT	1 cut(s)	787
BisI	GCNGC	3 cut(s)	527, 912, 1095
BlsI	GCNGC	3 cut(s)	528, 913, 1096
Bme18I	GGWCC	2 cut(s)	420, 559
BmeT110I	CYCGRG	1 cut(s)	1296
BmgT120I	GGNCC	3 cut(s)	359, 420, 559
BmiI	GGNNCC	2 cut(s)	249, 422
BmrI	ACTGGG	2 cut(s)	1176, 1437
BmuI	ACTGGG	2 cut(s)	1176, 1437
BpiI	GAAGAC	1 cut(s)	668
BpmI	CTGGAG	1 cut(s)	470
Bpu10I	CCTNAGC	1 cut(s)	1362
Bsa29I	ATCGAT	1 cut(s)	1530
BsaJI	CCNNGG	4 cut(s)	349, 821, 1311, 1518
BsaWI	WCCGGW	1 cut(s)	998
BsaXI	ACNNNNNCTCC	4 cut(s)	843, 873, 1361, 1391
Bsc4I	CCNNNNNNNGG	2 cut(s)	350, 1509
Bse1I	ACTGG	4 cut(s)	196, 619, 1182, 1443
Bse3DI	GCAATG	3 cut(s)	579, 687, 1244
BseCI	ATCGAT	1 cut(s)	1530
BseDI	CCNNGG	4 cut(s)	349, 821, 1311, 1518
BseGI	GGATG	3 cut(s)	42, 196, 1503
BseLI	CCNNNNNNNGG	2 cut(s)	350, 1509
BseMI	GCAATG	3 cut(s)	579, 687, 1244
BseMII	CTCAG	2 cut(s)	709, 1353
BseNI	ACTGG	4 cut(s)	196, 619, 1182, 1443
BseRI	GAGGAG	2 cut(s)	6, 749
BseSI	GKGCMC	3 cut(s)	371, 1060, 1500
BseXI	GCAGC	2 cut(s)	923, 1081
BsgI	GTGCAG	1 cut(s)	557
Bsh1285I	CGRYCG	1 cut(s)	1534
BshFI	GGCC	2 cut(s)	161, 361
BshVI	ATCGAT	1 cut(s)	1530
BsiEI	CGRYCG	1 cut(s)	1534
BsiHKAI	GWGCWC	3 cut(s)	371, 758, 1179
BsiHKCI	CYCGRG	1 cut(s)	1296
BsiSI	CCGG	1 cut(s)	999
BslI	CCNNNNNNNGG	2 cut(s)	350, 1509
BsmAI	GTCTC	1 cut(s)	488
BsnI	GGCC	2 cut(s)	161, 361
BsoBI	CYCGRG	1 cut(s)	1296
Bsp1286I	GDGCHC	5 cut(s)	371, 758, 1060, 1179, 1500
Bsp1407I	TGTACA	2 cut(s)	78, 1425
Bsp143I	GATC	4 cut(s)	105, 787, 1267, 1531
BspACI	CCGC	4 cut(s)	354, 526, 597, 962
BspANI	GGCC	2 cut(s)	161, 361
BspCNI	CTCAG	2 cut(s)	708, 1354
BspDI	ATCGAT	1 cut(s)	1530
BspLI	GGNNCC	2 cut(s)	249, 422
BspPI	GGATC	1 cut(s)	1262
BspQI	GCTCTTC	1 cut(s)	1167
BspTI	CTTAAG	1 cut(s)	1081
BsrDI	GCAATG	3 cut(s)	579, 687, 1244
BsrGI	TGTACA	2 cut(s)	78, 1425
BsrI	ACTGG	4 cut(s)	196, 619, 1182, 1443
BssECI	CCNNGG	4 cut(s)	349, 821, 1311, 1518
BssMI	GATC	4 cut(s)	105, 787, 1267, 1531
BssT1I	CCWWGG	3 cut(s)	349, 821, 1311
Bst4CI	ACNGT	6 cut(s)	217, 257, 496, 667, 859, 926
Bst6I	CTCTTC	3 cut(s)	546, 1152, 1167
BstAFI	CTTAAG	1 cut(s)	1081
BstAPI	GCANNNNNTGC	2 cut(s)	689, 1033
BstAUI	TGTACA	2 cut(s)	78, 1425
BstC8I	GCNNGC	5 cut(s)	707, 1092, 1410, 1461, 1465
BstDEI	CTNAG	3 cut(s)	202, 695, 1362
BstDSI	CCRYGG	1 cut(s)	1518
BstF5I	GGATG	3 cut(s)	42, 196, 1503
BstKTI	GATC	4 cut(s)	108, 790, 1270, 1534
BstMAI	GTCTC	1 cut(s)	488
BstMBI	GATC	4 cut(s)	105, 787, 1267, 1531
BstMCI	CGRYCG	1 cut(s)	1534
BstMWI	GCNNNNNNNGC	6 cut(s)	20, 535, 689, 753, 1033, 1103
BstNSI	RCATGY	5 cut(s)	523, 950, 1043, 1340, 1349
BstSLI	GKGCMC	3 cut(s)	371, 1060, 1500
BstV1I	GCAGC	2 cut(s)	923, 1081
BstV2I	GAAGAC	1 cut(s)	668
BstX2I	RGATCY	2 cut(s)	787, 1267
BstXI	CCANNNNNNTGG	1 cut(s)	398
BstYI	RGATCY	2 cut(s)	787, 1267
Bsu15I	ATCGAT	1 cut(s)	1530
BsuI	GTATCC	1 cut(s)	1190
BsuRI	GGCC	2 cut(s)	161, 361
BsuTUI	ATCGAT	1 cut(s)	1530
BtgI	CCRYGG	1 cut(s)	1518
BtsCI	GGATG	3 cut(s)	42, 196, 1503
BtsI	GCAGTG	2 cut(s)	1034, 1060
BtsIMutI	CAGTG	4 cut(s)	885, 992, 1034, 1060
Cac8I	GCNNGC	5 cut(s)	707, 1092, 1410, 1461, 1465
Cfr13I	GGNCC	3 cut(s)	359, 420, 559
ClaI	ATCGAT	1 cut(s)	1530
CseI	GACGC	1 cut(s)	636
Csp6I	GTAC	5 cut(s)	40, 79, 950, 1185, 1426
CviQI	GTAC	5 cut(s)	40, 79, 950, 1185, 1426
DdeI	CTNAG	3 cut(s)	202, 695, 1362
DpnI	GATC	4 cut(s)	107, 789, 1269, 1533
DpnII	GATC	4 cut(s)	105, 787, 1267, 1531
DraIII	CACNNNGTG	1 cut(s)	1055
Eam1104I	CTCTTC	3 cut(s)	546, 1152, 1167
EarI	CTCTTC	3 cut(s)	546, 1152, 1167
EciI	GGCGGA	1 cut(s)	369
Ecl136II	GAGCTC	2 cut(s)	756, 1177
Eco130I	CCWWGG	3 cut(s)	349, 821, 1311
Eco24I	GRGCYC	2 cut(s)	758, 1179
Eco47I	GGWCC	2 cut(s)	420, 559
Eco53kI	GAGCTC	2 cut(s)	756, 1177
Eco57I	CTGAAG	3 cut(s)	111, 246, 1173
Eco88I	CYCGRG	1 cut(s)	1296
EcoICRI	GAGCTC	2 cut(s)	756, 1177
EcoO109I	RGGNCCY	1 cut(s)	359
EcoT14I	CCWWGG	3 cut(s)	349, 821, 1311
EcoT22I	ATGCAT	1 cut(s)	948
EcoT38I	GRGCYC	2 cut(s)	758, 1179
ErhI	CCWWGG	3 cut(s)	349, 821, 1311
FalI	AAGNNNNNCTT	2 cut(s)	1421, 1453
FauI	CCCGC	1 cut(s)	590
Fnu4HI	GCNGC	3 cut(s)	527, 912, 1095
FokI	GGATG	3 cut(s)	49, 203, 1490
FriOI	GRGCYC	2 cut(s)	758, 1179
Fsp4HI	GCNGC	3 cut(s)	527, 912, 1095
FspBI	CTAG	5 cut(s)	20, 639, 759, 783, 1398
GluI	GCNGC	3 cut(s)	527, 912, 1095
GsuI	CTGGAG	1 cut(s)	470
HaeIII	GGCC	2 cut(s)	161, 361
HapII	CCGG	1 cut(s)	999
HgaI	GACGC	1 cut(s)	636
HindIII	AAGCTT	1 cut(s)	1203
HinfI	GANTC	3 cut(s)	414, 481, 1148
HpaII	CCGG	1 cut(s)	999
HphI	GGTGA	4 cut(s)	187, 931, 1237, 1327
Hpy166II	GTNNAC	5 cut(s)	81, 369, 816, 922, 1318
Hpy188I	TCNGA	5 cut(s)	480, 698, 1017, 1153, 1264
Hpy188III	TCNNGA	5 cut(s)	89, 109, 418, 487, 654
Hpy8I	GTNNAC	5 cut(s)	81, 369, 816, 922, 1318
HpyAV	CCTTC	4 cut(s)	82, 1282, 1351, 1487
HpyCH4III	ACNGT	6 cut(s)	217, 257, 496, 667, 859, 926
HpyF10VI	GCNNNNNNNGC	6 cut(s)	20, 535, 689, 753, 1033, 1103
HpyF3I	CTNAG	3 cut(s)	202, 695, 1362
Kzo9I	GATC	4 cut(s)	105, 787, 1267, 1531
LguI	GCTCTTC	1 cut(s)	1167
LmnI	GCTCC	5 cut(s)	19, 851, 1087, 1182, 1312
Lsp1109I	GCAGC	2 cut(s)	923, 1081
MaeI	CTAG	5 cut(s)	20, 639, 759, 783, 1398
MaeIII	GTNAC	2 cut(s)	610, 979
MalI	GATC	4 cut(s)	107, 789, 1269, 1533
MboI	GATC	4 cut(s)	105, 787, 1267, 1531
MflI	RGATCY	2 cut(s)	787, 1267
MhlI	GDGCHC	5 cut(s)	371, 758, 1060, 1179, 1500
MlyI	GAGTC	1 cut(s)	490
MmeI	TCCRAC	2 cut(s)	33, 604
Mph1103I	ATGCAT	1 cut(s)	948
MseI	TTAA	3 cut(s)	294, 675, 1082
MspCI	CTTAAG	1 cut(s)	1081
MspI	CCGG	1 cut(s)	999
MwoI	GCNNNNNNNGC	6 cut(s)	20, 535, 689, 753, 1033, 1103
NdeII	GATC	4 cut(s)	105, 787, 1267, 1531
NlaIV	GGNNCC	2 cut(s)	249, 422
NmuCI	GTSAC	1 cut(s)	979
NsiI	ATGCAT	1 cut(s)	948
NspI	RCATGY	5 cut(s)	523, 950, 1043, 1340, 1349
PciI	ACATGT	2 cut(s)	1336, 1345
PciSI	GCTCTTC	1 cut(s)	1167
PcsI	WCGNNNNNNNCGW	1 cut(s)	1057
PfeI	GAWTC	2 cut(s)	414, 1148
PflMI	CCANNNNNTGG	2 cut(s)	350, 1509
PkrI	GCNGC	3 cut(s)	528, 913, 1096
Ple19I	CGATCG	1 cut(s)	1534
PleI	GAGTC	1 cut(s)	489
PpsI	GAGTC	1 cut(s)	489
PscI	ACATGT	2 cut(s)	1336, 1345
PshBI	ATTAAT	1 cut(s)	294
Psp124BI	GAGCTC	2 cut(s)	758, 1179
PspN4I	GGNNCC	2 cut(s)	249, 422
PspPI	GGNCC	3 cut(s)	359, 420, 559
PsuI	RGATCY	2 cut(s)	787, 1267
PvuI	CGATCG	1 cut(s)	1534
RsaI	GTAC	5 cut(s)	41, 80, 951, 1186, 1427
RsaNI	GTAC	5 cut(s)	40, 79, 950, 1185, 1426
SacI	GAGCTC	2 cut(s)	758, 1179
SapI	GCTCTTC	1 cut(s)	1167
SaqAI	TTAA	3 cut(s)	294, 675, 1082
SatI	GCNGC	3 cut(s)	527, 912, 1095
Sau3AI	GATC	4 cut(s)	105, 787, 1267, 1531
Sau96I	GGNCC	3 cut(s)	359, 420, 559
SchI	GAGTC	1 cut(s)	490
SduI	GDGCHC	5 cut(s)	371, 758, 1060, 1179, 1500
SinI	GGWCC	2 cut(s)	420, 559
SmlI	CTYRAG	1 cut(s)	1081
SmoI	CTYRAG	1 cut(s)	1081
SsiI	CCGC	4 cut(s)	354, 526, 597, 962
SspI	AATATT	1 cut(s)	1417
SspMI	CTAG	5 cut(s)	20, 639, 759, 783, 1398
SstI	GAGCTC	2 cut(s)	758, 1179
StyI	CCWWGG	3 cut(s)	349, 821, 1311
TaaI	ACNGT	6 cut(s)	217, 257, 496, 667, 859, 926
TaqI	TCGA	4 cut(s)	433, 1342, 1530, 1534
TatI	WGTACW	3 cut(s)	78, 949, 1425
TauI	GCSGC	1 cut(s)	529
TfiI	GAWTC	2 cut(s)	414, 1148
Tru1I	TTAA	3 cut(s)	294, 675, 1082
Tru9I	TTAA	3 cut(s)	294, 675, 1082
TscAI	CASTG	4 cut(s)	892, 999, 1034, 1060
TseFI	GTSAC	1 cut(s)	979
TseI	GCWGC	2 cut(s)	911, 1094
Tsp45I	GTSAC	1 cut(s)	979
TspDTI	ATGAA	5 cut(s)	64, 398, 455, 1088, 1125
TspGWI	ACGGA	1 cut(s)	1507
TspRI	CASTG	4 cut(s)	892, 999, 1034, 1060
Van91I	CCANNNNNTGG	2 cut(s)	350, 1509
Vha464I	CTTAAG	1 cut(s)	1081
VneI	GTGCAC	1 cut(s)	367
VpaK11BI	GGWCC	2 cut(s)	420, 559
VspI	ATTAAT	1 cut(s)	294
XapI	RAATTY	3 cut(s)	168, 764, 1076
XceI	RCATGY	5 cut(s)	523, 950, 1043, 1340, 1349
XcmI	CCANNNNNNNNNTGG	2 cut(s)	169, 1283
XspI	CTAG	5 cut(s)	20, 639, 759, 783, 1398
Zsp2I	ATGCAT	1 cut(s)	948

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.