AT4G04680

Testis-expressed sequence 10 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0001389
Physical Location & Seq
Forward (+)
2372266 .. 2373406
1141 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G04680.1

Sequence Viewer

Length: 786 bp
ATGATCAGTGTTTTTGCATCCTTTATTAAGCCTAGCTCTCTCTGCTTATGGTTGAAAGTTGAAACTGCTGCAGCAATGATACTTGCTGAGCAAAATGTGGCAGCTGAAAAGAGTGGCTTAGCTACAAGTAAGAAAGGCTTGACCTTGAAGGATCTTCTGCCACAAACTTCACATTGCAATGCCAAACTTCGCAAAGATGCATTAAATGGTCTCAAAGACCTTTTGAAGAACCATCCAGCAGAGCTGCAGTCACATAAATATGCTATCATTCAGAAACTTAGGGAACGAATTATGGATGATGATAGTCTAGTGAGAGATGCTCTTTATCAACTATTTGAAAGTGTGATCCTTCCTGCTTGTAAAAATGATAACCAGAGCCCTATGGTGTCACTTTTAATGCCATACATATCTTGCGCTATGGCTCATTCATCGGTTGAGTGTTACATTTCCCAACTTTTGCCTCTAATGTTTCTTGCCACGACGTTCCCTGATATTTCCATGTGCTACTTGTTGCAGATTCTTGAAAACTACAAGGATAACAAACACAAATTGACGTATTTTCTTCTAATCTTTACAAGAAACAGAAACTTTTTGTTTCCATCCATTTACAGATTTTGTTTTTTTCTCCTAAACCTACGAGCTCACACCATGGCCAAGGGATTTCTAGATACTGGCCAGTCACCATCGCATAACCTCGGCCAAGGGAGTACACATACTACTTTAGACCAAAACGTAAAACTTGTCAAGATCATTACAGAATCCAAAACCAGTAGTGTATCTCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ipi1_N

Protein Analysis

261

Amino Acids

29.43

Weight (kDa)

9.0

Isoelectric Point (pI)

46.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 159, 340
AcoI YGGCCR 3 cut(s) 651, 673, 697
AfaI GTAC 1 cut(s) 709
AgsI TTSAA 6 cut(s) 55, 62, 148, 226, 338, 524
AluBI AGCT 5 cut(s) 36, 104, 122, 244, 641
AluI AGCT 5 cut(s) 36, 104, 122, 244, 641
Alw21I GWGCWC 1 cut(s) 643
Alw26I GTCTC 1 cut(s) 215
AlwI GGATC 2 cut(s) 159, 340
AoxI GGCC 3 cut(s) 651, 673, 697
ApeKI GCWGC 4 cut(s) 68, 71, 101, 244
AspLEI GCGC 1 cut(s) 416
AsuHPI GGTGA 1 cut(s) 672
BalI TGGCCA 2 cut(s) 653, 675
BanII GRGCYC 2 cut(s) 380, 643
Bbv12I GWGCWC 1 cut(s) 643
BbvI GCAGC 4 cut(s) 55, 83, 113, 231
BccI CCATC 3 cut(s) 240, 607, 691
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 1 cut(s) 215
BfaI CTAG 3 cut(s) 33, 308, 665
BfmI CTRYAG 2 cut(s) 69, 245
BisI GCNGC 4 cut(s) 69, 72, 102, 245
BlpI GCTNAGC 2 cut(s) 87, 118
BlsI GCNGC 4 cut(s) 70, 73, 103, 246
BmsI GCATC 3 cut(s) 26, 187, 307
BplI GAGNNNNNCTC 2 cut(s) 304, 336
Bpu1102I GCTNAGC 2 cut(s) 87, 118
BsaI GGTCTC 1 cut(s) 215
BsaJI CCNNGG 4 cut(s) 648, 654, 694, 700
Bse1I ACTGG 3 cut(s) 676, 676, 768
Bse3DI GCAATG 3 cut(s) 81, 172, 184
BseDI CCNNGG 4 cut(s) 648, 654, 694, 700
BseGI GGATG 4 cut(s) 17, 232, 301, 599
BseMI GCAATG 3 cut(s) 81, 172, 184
BseMII CTCAG 1 cut(s) 78
BseNI ACTGG 3 cut(s) 676, 676, 768
BseXI GCAGC 4 cut(s) 55, 83, 113, 231
BshFI GGCC 3 cut(s) 653, 675, 699
BsiHKAI GWGCWC 1 cut(s) 643
BsmAI GTCTC 1 cut(s) 215
BsnI GGCC 3 cut(s) 653, 675, 699
Bso31I GGTCTC 1 cut(s) 215
Bsp1286I GDGCHC 2 cut(s) 380, 643
Bsp143I GATC 4 cut(s) 3, 151, 345, 747
Bsp1720I GCTNAGC 2 cut(s) 87, 118
Bsp19I CCATGG 1 cut(s) 648
BspANI GGCC 3 cut(s) 653, 675, 699
BspCNI CTCAG 1 cut(s) 79
BspMAI CTGCAG 2 cut(s) 73, 249
BspPI GGATC 2 cut(s) 159, 340
BspTNI GGTCTC 1 cut(s) 215
BsrDI GCAATG 3 cut(s) 81, 172, 184
BsrI ACTGG 3 cut(s) 676, 676, 768
BssECI CCNNGG 4 cut(s) 648, 654, 694, 700
BssMI GATC 4 cut(s) 3, 151, 345, 747
BssT1I CCWWGG 3 cut(s) 648, 654, 700
BstDEI CTNAG 3 cut(s) 87, 118, 278
BstDSI CCRYGG 1 cut(s) 648
BstF5I GGATG 4 cut(s) 17, 232, 301, 599
BstHHI GCGC 1 cut(s) 416
BstKTI GATC 4 cut(s) 6, 154, 348, 750
BstMAI GTCTC 1 cut(s) 215
BstMBI GATC 4 cut(s) 3, 151, 345, 747
BstMWI GCNNNNNNNGC 1 cut(s) 42
BstSFI CTRYAG 2 cut(s) 69, 245
BstV1I GCAGC 4 cut(s) 55, 83, 113, 231
BstX2I RGATCY 1 cut(s) 151
BstYI RGATCY 1 cut(s) 151
BsuRI GGCC 3 cut(s) 653, 675, 699
BtgI CCRYGG 1 cut(s) 648
BtgZI GCGATG 1 cut(s) 669
BtsCI GGATG 4 cut(s) 17, 232, 301, 599
BtsIMutI CAGTG 1 cut(s) 13
CfoI GCGC 1 cut(s) 416
Csp6I GTAC 1 cut(s) 708
CviAII CATG 2 cut(s) 499, 649
CviQI GTAC 1 cut(s) 708
DdeI CTNAG 3 cut(s) 87, 118, 278
DpnI GATC 4 cut(s) 5, 153, 347, 749
DpnII GATC 4 cut(s) 3, 151, 345, 747
EaeI YGGCCR 3 cut(s) 651, 673, 697
Ecl136II GAGCTC 1 cut(s) 641
Eco130I CCWWGG 3 cut(s) 648, 654, 700
Eco24I GRGCYC 2 cut(s) 380, 643
Eco31I GGTCTC 1 cut(s) 215
Eco53kI GAGCTC 1 cut(s) 641
EcoICRI GAGCTC 1 cut(s) 641
EcoT14I CCWWGG 3 cut(s) 648, 654, 700
EcoT22I ATGCAT 1 cut(s) 202
EcoT38I GRGCYC 2 cut(s) 380, 643
ErhI CCWWGG 3 cut(s) 648, 654, 700
FaeI CATG 2 cut(s) 502, 652
FalI AAGNNNNNCTT 4 cut(s) 101, 133, 122, 154
FatI CATG 2 cut(s) 498, 648
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 4 cut(s) 69, 72, 102, 245
FokI GGATG 4 cut(s) 4, 219, 308, 586
FriOI GRGCYC 2 cut(s) 380, 643
Fsp4HI GCNGC 4 cut(s) 69, 72, 102, 245
FspBI CTAG 3 cut(s) 33, 308, 665
GlaI GCGC 1 cut(s) 415
GluI GCNGC 4 cut(s) 69, 72, 102, 245
HaeIII GGCC 3 cut(s) 653, 675, 699
HhaI GCGC 1 cut(s) 416
Hin1II CATG 2 cut(s) 502, 652
Hin6I GCGC 1 cut(s) 414
HinP1I GCGC 1 cut(s) 414
HinfI GANTC 2 cut(s) 517, 758
HphI GGTGA 1 cut(s) 672
Hpy166II GTNNAC 1 cut(s) 710
Hpy188I TCNGA 1 cut(s) 273
Hpy188III TCNNGA 3 cut(s) 521, 665, 745
Hpy8I GTNNAC 1 cut(s) 710
Hpy99I CGWCG 1 cut(s) 484
HpyAV CCTTC 2 cut(s) 142, 359
HpyCH4IV ACGT 3 cut(s) 482, 554, 732
HpyCH4V TGCA 6 cut(s) 17, 71, 177, 200, 247, 514
HpyF10VI GCNNNNNNNGC 1 cut(s) 42
HpyF3I CTNAG 3 cut(s) 87, 118, 278
HpySE526I ACGT 3 cut(s) 482, 554, 732
Hsp92II CATG 2 cut(s) 502, 652
HspAI GCGC 1 cut(s) 414
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 4 cut(s) 3, 151, 345, 747
LpnPI CCDG 7 cut(s) 249, 366, 386, 501, 657, 689, 781
Lsp1109I GCAGC 4 cut(s) 55, 83, 113, 231
LweI GCATC 3 cut(s) 26, 187, 307
MaeI CTAG 3 cut(s) 33, 308, 665
MaeII ACGT 3 cut(s) 482, 554, 732
MaeIII GTNAC 4 cut(s) 249, 387, 440, 678
MalI GATC 4 cut(s) 5, 153, 347, 749
MboI GATC 4 cut(s) 3, 151, 345, 747
MboII GAAGA 3 cut(s) 146, 238, 554
MflI RGATCY 1 cut(s) 151
MhlI GDGCHC 2 cut(s) 380, 643
MlsI TGGCCA 2 cut(s) 653, 675
MluCI AATT 2 cut(s) 288, 548
MluNI TGGCCA 2 cut(s) 653, 675
MnlI CCTC 2 cut(s) 471, 704
Mox20I TGGCCA 2 cut(s) 653, 675
Mph1103I ATGCAT 1 cut(s) 202
MscI TGGCCA 2 cut(s) 653, 675
MseI TTAA 3 cut(s) 27, 203, 395
MslI CAYNNNNRTG 2 cut(s) 177, 258
Msp20I TGGCCA 2 cut(s) 653, 675
MspA1I CMGCKG 1 cut(s) 104
MwoI GCNNNNNNNGC 1 cut(s) 42
NcoI CCATGG 1 cut(s) 648
NdeII GATC 4 cut(s) 3, 151, 345, 747
NlaIII CATG 2 cut(s) 502, 652
NmeAIII GCCGAG 1 cut(s) 675
NmuCI GTSAC 3 cut(s) 249, 387, 678
NsiI ATGCAT 1 cut(s) 202
PfeI GAWTC 2 cut(s) 517, 758
PkrI GCNGC 4 cut(s) 70, 73, 103, 246
Psp124BI GAGCTC 1 cut(s) 643
PstI CTGCAG 2 cut(s) 73, 249
PsuI RGATCY 1 cut(s) 151
PvuII CAGCTG 1 cut(s) 104
RsaI GTAC 1 cut(s) 709
RsaNI GTAC 1 cut(s) 708
RseI CAYNNNNRTG 2 cut(s) 177, 258
SacI GAGCTC 1 cut(s) 643
SaqAI TTAA 3 cut(s) 27, 203, 395
SatI GCNGC 4 cut(s) 69, 72, 102, 245
Sau3AI GATC 4 cut(s) 3, 151, 345, 747
SduI GDGCHC 2 cut(s) 380, 643
SfaNI GCATC 3 cut(s) 26, 187, 307
SfcI CTRYAG 2 cut(s) 69, 245
SmiMI CAYNNNNRTG 2 cut(s) 177, 258
Sse9I AATT 2 cut(s) 288, 548
SspMI CTAG 3 cut(s) 33, 308, 665
SstI GAGCTC 1 cut(s) 643
StyI CCWWGG 3 cut(s) 648, 654, 700
TaiI ACGT 3 cut(s) 485, 557, 735
TasI AATT 2 cut(s) 288, 548
TatI WGTACW 1 cut(s) 707
TfiI GAWTC 2 cut(s) 517, 758
Tru1I TTAA 3 cut(s) 27, 203, 395
Tru9I TTAA 3 cut(s) 27, 203, 395
TscAI CASTG 1 cut(s) 13
TseFI GTSAC 3 cut(s) 249, 387, 678
TseI GCWGC 4 cut(s) 68, 71, 101, 244
Tsp45I GTSAC 3 cut(s) 249, 387, 678
TspDTI ATGAA 1 cut(s) 417
TspRI CASTG 1 cut(s) 13
XbaI TCTAGA 1 cut(s) 664
XspI CTAG 3 cut(s) 33, 308, 665
Zsp2I ATGCAT 1 cut(s) 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.