Rorug01G0093900

Testis-expressed sequence 10 protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Forward (+)
15316828 .. 15464084
147257 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0093900.1

Sequence Viewer

Length: 1296 bp
ATGGATAGGTTAAAGAACAGCTATGGTCTTGATATTACATATCGTGTTGCATGGAAAGGTAAAGAAAATGCAATGAAAGAGTTGCATGGTTCAGATGAGGACTCCTATTCAATGTTAACTTGGTATCGTGATGCCATGATGGAGAGTACTCTGGGGTCTTGCTTTATTTTGGAGTGTGATGAATCCACTGGTCGTTTTCAGAGGCTTTTTCCTTGTTTTGGTGGAGTTATTGAGGGTATCAAGTCTTGCATACCTCTATTGTTCGTGGATGGTGCACATGTGAAGAGAAAGTATAAGGGTCAGCTTCTTTCTGCTACAGGAAAAGATGGTATTCAAGGTTTTTTCCCTTTTGCCATTGCCGTTGTTGATGCCGAAACTGATGCTAATTGGAATTGGTATTTTGGGATCTTGAAGACAATTCTAGACCCGCAAGGCAGAGTCATTACTTTTGTTTTTGATCGACAACAAGGGTTGATGAATTCCTTGGCTAGATTTTACAAGGTTGCATACTCATCTACTGAGCATCAGTATTACCATAACCTGAGGGAGCTTCTTGATGAGGGCAAGGATCTTGTTGTGCAATTCCTTAGAGGACTACCTGTTGAAAAATGGTGTAATGCCTTCTTTCGAGGTAATAAATTTGGTGAGATGGTCAACAGTACAGCAAAATGTTTTAATAGTTGGACTCTCAAGGCTTGGGAACTCCCAATTTTTCCTATGTTGGAGAAGATCCGCGTGATGATAATGGGGAAGATGGTTGAGAGGAAGCTCTTGGTAAGGAAGTGGACTATTCCTCTTTGTCCGGTAATGCAAGCTGAACTTGTTAAAAATATGGAAGTAGGGAGAGATTGTACAGTTAGTAGGTCGGATGAGTTTGTTTATGGGGTTCACTCCGAACGCTCAACATCTGTTGATATAATGGCCCAAACTTGTGCATGTCATCAGTGGCAGATTAAATCATTTCCTTTCTCTCACGCTCTTGTTGCCATCCAACGAGCGAGATATGTGGTTTACCCGAGATATGTGGTTTACCCTTTTATTGAACGATATTACTTTAAAGAGAAGTATTTCAAGAGTTATTCCTTTGGTATTAAGCCCATTCCCAATATTGAGCAGAGCTATGTCCAATGCTCTGATAGCACATCTATCAAACCTCCACTAACCAGAAGACCTCTAGGAAGGCCCAAGACCAAATGTATCAAGTTTGTTGGCGAGGTGTCTTCAAAGGAGAGGATGTGTGGTCGTTGTGGCCAATTGAGGCGGCATAATAGGACGACATGCAATGTTCCAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

431

Amino Acids

49.92

Weight (kDa)

9.24

Isoelectric Point (pI)

34.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MULE PF10551 87 - 166 3.9e-08 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 735
AciI CCGC 3 cut(s) 428, 733, 1261
AclWI GGATC 3 cut(s) 413, 576, 724
AcoI YGGCCR 1 cut(s) 1249
AcsI RAATTY 2 cut(s) 478, 638
AfaI GTAC 3 cut(s) 148, 661, 853
AfiI CCNNNNNNNGG 1 cut(s) 218
AflIII ACRYGT 1 cut(s) 277
AgsI TTSAA 7 cut(s) 111, 335, 412, 605, 1043, 1072, 1224
AluBI AGCT 6 cut(s) 21, 304, 550, 769, 815, 1119
AluI AGCT 6 cut(s) 21, 304, 550, 769, 815, 1119
Alw21I GWGCWC 1 cut(s) 277
Alw44I GTGCAC 1 cut(s) 273
AlwI GGATC 3 cut(s) 413, 576, 724
Ama87I CYCGRG 1 cut(s) 1015
AoxI GGCC 3 cut(s) 921, 1181, 1249
ApaLI GTGCAC 1 cut(s) 273
ApoI RAATTY 2 cut(s) 478, 638
Asp700I GAANNNNTTC 1 cut(s) 1067
AspS9I GGNCC 2 cut(s) 922, 1182
AsuHPI GGTGA 1 cut(s) 656
AvaI CYCGRG 1 cut(s) 1015
AxyI CCTNAGG 1 cut(s) 542
BaeGI GKGCMC 1 cut(s) 277
BalI TGGCCA 1 cut(s) 1251
BbsI GAAGAC 3 cut(s) 419, 1174, 1212
Bbv12I GWGCWC 1 cut(s) 277
BccI CCATC 6 cut(s) 133, 263, 320, 643, 748, 995
BceAI ACGGC 1 cut(s) 344
BcgI CGANNNNNNTGC 2 cut(s) 362, 396
BfaI CTAG 3 cut(s) 422, 489, 1175
BfmI CTRYAG 1 cut(s) 315
BisI GCNGC 1 cut(s) 1262
BlsI GCNGC 1 cut(s) 1263
BmcAI AGTACT 1 cut(s) 148
BmeT110I CYCGRG 1 cut(s) 1015
BmgT120I GGNCC 2 cut(s) 922, 1182
BmsI GCATC 4 cut(s) 121, 358, 370, 532
BpiI GAAGAC 3 cut(s) 419, 1174, 1212
BpuEI CTTGAG 1 cut(s) 674
BsaJI CCNNGG 1 cut(s) 483
BsaWI WCCGGW 1 cut(s) 802
BsaXI ACNNNNNCTCC 4 cut(s) 835, 865, 1220, 1250
Bsc4I CCNNNNNNNGG 1 cut(s) 218
Bse1I ACTGG 1 cut(s) 193
Bse21I CCTNAGG 1 cut(s) 542
Bse3DI GCAATG 3 cut(s) 78, 354, 1288
BseDI CCNNGG 1 cut(s) 483
BseGI GGATG 4 cut(s) 274, 874, 987, 1239
BseLI CCNNNNNNNGG 1 cut(s) 218
BseMI GCAATG 3 cut(s) 78, 354, 1288
BseMII CTCAG 2 cut(s) 510, 533
BseNI ACTGG 1 cut(s) 193
BseSI GKGCMC 1 cut(s) 277
Bsh1236I CGCG 1 cut(s) 735
BshFI GGCC 3 cut(s) 923, 1183, 1251
BsiHKAI GWGCWC 1 cut(s) 277
BsiHKCI CYCGRG 1 cut(s) 1015
BsiSI CCGG 1 cut(s) 803
BslI CCNNNNNNNGG 1 cut(s) 218
BsnI GGCC 3 cut(s) 923, 1183, 1251
BsoBI CYCGRG 1 cut(s) 1015
Bsp1286I GDGCHC 1 cut(s) 277
Bsp1407I TGTACA 1 cut(s) 851
Bsp143I GATC 4 cut(s) 405, 457, 568, 729
BspACI CCGC 3 cut(s) 428, 733, 1261
BspANI GGCC 3 cut(s) 923, 1183, 1251
BspCNI CTCAG 2 cut(s) 511, 534
BspFNI CGCG 1 cut(s) 735
BspPI GGATC 3 cut(s) 413, 576, 724
BsrDI GCAATG 3 cut(s) 78, 354, 1288
BsrGI TGTACA 1 cut(s) 851
BsrI ACTGG 1 cut(s) 193
BssECI CCNNGG 1 cut(s) 483
BssMI GATC 4 cut(s) 405, 457, 568, 729
BssT1I CCWWGG 1 cut(s) 483
Bst4CI ACNGT 2 cut(s) 659, 856
Bst6I CTCTTC 1 cut(s) 278
BstAUI TGTACA 1 cut(s) 851
BstC8I GCNNGC 1 cut(s) 813
BstDEI CTNAG 3 cut(s) 519, 542, 587
BstF5I GGATG 4 cut(s) 274, 874, 987, 1239
BstFNI CGCG 1 cut(s) 735
BstKTI GATC 4 cut(s) 408, 460, 571, 732
BstMBI GATC 4 cut(s) 405, 457, 568, 729
BstMWI GCNNNNNNNGC 2 cut(s) 983, 1137
BstNSI RCATGY 3 cut(s) 281, 939, 1281
BstSFI CTRYAG 1 cut(s) 315
BstSLI GKGCMC 1 cut(s) 277
BstUI CGCG 1 cut(s) 735
BstV2I GAAGAC 3 cut(s) 419, 1174, 1212
BstX2I RGATCY 3 cut(s) 405, 568, 729
BstYI RGATCY 3 cut(s) 405, 568, 729
Bsu36I CCTNAGG 1 cut(s) 542
BsuRI GGCC 3 cut(s) 923, 1183, 1251
BtsCI GGATG 4 cut(s) 274, 874, 987, 1239
BtsIMutI CAGTG 2 cut(s) 186, 950
Cac8I GCNNGC 1 cut(s) 813
Cfr13I GGNCC 2 cut(s) 922, 1182
Csp6I GTAC 3 cut(s) 147, 660, 852
CviAII CATG 6 cut(s) 51, 86, 136, 278, 936, 1278
CviQI GTAC 3 cut(s) 147, 660, 852
DdeI CTNAG 3 cut(s) 519, 542, 587
DpnI GATC 4 cut(s) 407, 459, 570, 731
DpnII GATC 4 cut(s) 405, 457, 568, 729
DraI TTTAAA 1 cut(s) 1057
EaeI YGGCCR 1 cut(s) 1249
Eam1104I CTCTTC 1 cut(s) 278
EarI CTCTTC 1 cut(s) 278
Eco130I CCWWGG 1 cut(s) 483
Eco81I CCTNAGG 1 cut(s) 542
Eco88I CYCGRG 1 cut(s) 1015
EcoRI GAATTC 1 cut(s) 478
EcoT14I CCWWGG 1 cut(s) 483
ErhI CCWWGG 1 cut(s) 483
FaeI CATG 6 cut(s) 54, 89, 139, 281, 939, 1281
FalI AAGNNNNNCTT 2 cut(s) 804, 836
FatI CATG 6 cut(s) 50, 85, 135, 277, 935, 1277
FauI CCCGC 1 cut(s) 435
Fnu4HI GCNGC 1 cut(s) 1262
FokI GGATG 4 cut(s) 281, 881, 974, 1246
Fsp4HI GCNGC 1 cut(s) 1262
FspBI CTAG 3 cut(s) 422, 489, 1175
GluI GCNGC 1 cut(s) 1262
HaeIII GGCC 3 cut(s) 923, 1183, 1251
HapII CCGG 1 cut(s) 803
Hin1II CATG 6 cut(s) 54, 89, 139, 281, 939, 1281
HincII GTYRAC 2 cut(s) 117, 655
HindII GTYRAC 2 cut(s) 117, 655
HinfI GANTC 4 cut(s) 101, 182, 438, 685
HpaI GTTAAC 1 cut(s) 117
HpaII CCGG 1 cut(s) 803
HphI GGTGA 1 cut(s) 656
Hpy166II GTNNAC 7 cut(s) 117, 275, 655, 786, 889, 1012, 1030
Hpy188I TCNGA 5 cut(s) 94, 201, 868, 895, 1135
Hpy188III TCNNGA 6 cut(s) 29, 128, 409, 422, 554, 1072
Hpy8I GTNNAC 7 cut(s) 117, 275, 655, 786, 889, 1012, 1030
HpyAV CCTTC 2 cut(s) 631, 1173
HpyCH4III ACNGT 2 cut(s) 659, 856
HpyF10VI GCNNNNNNNGC 2 cut(s) 983, 1137
HpyF3I CTNAG 3 cut(s) 519, 542, 587
Hsp92II CATG 6 cut(s) 54, 89, 139, 281, 939, 1281
KspAI GTTAAC 1 cut(s) 117
Kzo9I GATC 4 cut(s) 405, 457, 568, 729
LmnI GCTCC 1 cut(s) 547
LpnPI CCDG 7 cut(s) 137, 174, 303, 554, 612, 816, 1177
LweI GCATC 4 cut(s) 121, 358, 370, 532
MaeI CTAG 3 cut(s) 422, 489, 1175
MalI GATC 4 cut(s) 407, 459, 570, 731
MboI GATC 4 cut(s) 405, 457, 568, 729
MboII GAAGA 6 cut(s) 295, 424, 739, 763, 1179, 1212
MfeI CAATTG 1 cut(s) 1253
MflI RGATCY 3 cut(s) 405, 568, 729
MhlI GDGCHC 1 cut(s) 277
MlsI TGGCCA 1 cut(s) 1251
MluCI AATT 8 cut(s) 385, 391, 417, 478, 581, 638, 708, 1253
MluNI TGGCCA 1 cut(s) 1251
MlyI GAGTC 3 cut(s) 95, 447, 679
MmeI TCCRAC 4 cut(s) 662, 702, 846, 1015
Mox20I TGGCCA 1 cut(s) 1251
MroXI GAANNNNTTC 1 cut(s) 1067
MscI TGGCCA 1 cut(s) 1251
MseI TTAA 7 cut(s) 11, 116, 675, 825, 954, 1056, 1092
Msp20I TGGCCA 1 cut(s) 1251
MspI CCGG 1 cut(s) 803
MunI CAATTG 1 cut(s) 1253
MvnI CGCG 1 cut(s) 735
MwoI GCNNNNNNNGC 2 cut(s) 983, 1137
NdeII GATC 4 cut(s) 405, 457, 568, 729
NlaIII CATG 6 cut(s) 54, 89, 139, 281, 939, 1281
NspI RCATGY 3 cut(s) 281, 939, 1281
PciI ACATGT 1 cut(s) 277
PdmI GAANNNNTTC 1 cut(s) 1067
PfeI GAWTC 1 cut(s) 182
PkrI GCNGC 1 cut(s) 1263
PleI GAGTC 3 cut(s) 95, 446, 679
PpsI GAGTC 3 cut(s) 95, 446, 679
PscI ACATGT 1 cut(s) 277
PspPI GGNCC 2 cut(s) 922, 1182
PsuI RGATCY 3 cut(s) 405, 568, 729
RsaI GTAC 3 cut(s) 148, 661, 853
RsaNI GTAC 3 cut(s) 147, 660, 852
SaqAI TTAA 7 cut(s) 11, 116, 675, 825, 954, 1056, 1092
SatI GCNGC 1 cut(s) 1262
Sau3AI GATC 4 cut(s) 405, 457, 568, 729
Sau96I GGNCC 2 cut(s) 922, 1182
ScaI AGTACT 1 cut(s) 148
SchI GAGTC 3 cut(s) 95, 447, 679
SduI GDGCHC 1 cut(s) 277
SfaNI GCATC 4 cut(s) 121, 358, 370, 532
SfcI CTRYAG 1 cut(s) 315
SmlI CTYRAG 1 cut(s) 689
SmoI CTYRAG 1 cut(s) 689
Sse9I AATT 8 cut(s) 385, 391, 417, 478, 581, 638, 708, 1253
SsiI CCGC 3 cut(s) 428, 733, 1261
SspI AATATT 1 cut(s) 1108
SspMI CTAG 3 cut(s) 422, 489, 1175
StyI CCWWGG 1 cut(s) 483
TaaI ACNGT 2 cut(s) 659, 856
TaqI TCGA 2 cut(s) 460, 628
TasI AATT 8 cut(s) 385, 391, 417, 478, 581, 638, 708, 1253
TatI WGTACW 3 cut(s) 146, 659, 851
TauI GCSGC 1 cut(s) 1264
TfiI GAWTC 1 cut(s) 182
Tru1I TTAA 7 cut(s) 11, 116, 675, 825, 954, 1056, 1092
Tru9I TTAA 7 cut(s) 11, 116, 675, 825, 954, 1056, 1092
TscAI CASTG 2 cut(s) 193, 950
TspDTI ATGAA 3 cut(s) 89, 195, 491
TspRI CASTG 2 cut(s) 193, 950
VneI GTGCAC 1 cut(s) 273
XapI RAATTY 2 cut(s) 478, 638
XbaI TCTAGA 1 cut(s) 421
XceI RCATGY 3 cut(s) 281, 939, 1281
XmnI GAANNNNTTC 1 cut(s) 1067
XspI CTAG 3 cut(s) 422, 489, 1175
ZrmI AGTACT 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.