RLG00000029754

Testis-expressed sequence 10 protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Forward (+)
48525241 .. 48527565
2325 bp
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UTR
Exon/CDS
Intron
RLM00000029754

Sequence Viewer

Length: 462 bp
ATGACAGGTTCTAAAAATGCCTCAAAGAAGAAGCAAAAGCGCGGTATCGACTTCAAGAAAATAAAGCGAAAGATTGGCAGAAAATTGCCACCAGCACAGAATGCTACTAATACTGAGATTAAATCCAAAGACGCATTGTTGGGAATTAAGGATTTATTCTTTAAGCATCCAGAAGAGTTGAGGTTGCATAAGTACGCTGTTATTGAAAAACTGCGTGAACGCATTGGTGATGATGATAGACTAGTTCGAGAAACGCTGTATCAACTTTTCAAGTCAGTGATTTTCCCTGGATTTAAGGAGGATAGAAAGAGAGCACCAGCGACCCGGATGACCCGACCCGTATCCGAAACCCGGTGCCACCCCTGTAACTTCTTCTACATTGCCGACGAGTCCTTGACTCCGGCGACGGTGGACGAGCTTCTGCCGCCGATTTCATCCCCTCTAAGTTGCAGATTGCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

154

Amino Acids

17.64

Weight (kDa)

9.94

Isoelectric Point (pI)

43.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 354
AccII CGCG 1 cut(s) 42
AciI CCGC 2 cut(s) 42, 425
AfaI GTAC 1 cut(s) 194
AfiI CCNNNNNNNGG 1 cut(s) 351
AgsI TTSAA 3 cut(s) 55, 206, 271
AhlI ACTAGT 1 cut(s) 241
AjnI CCWGG 1 cut(s) 286
AluBI AGCT 1 cut(s) 418
AluI AGCT 1 cut(s) 418
Alw21I GWGCWC 1 cut(s) 316
AspLEI GCGC 1 cut(s) 42
AsuC2I CCSGG 2 cut(s) 325, 352
AsuHPI GGTGA 1 cut(s) 239
BanI GGYRCC 1 cut(s) 354
Bbv12I GWGCWC 1 cut(s) 316
BciT130I CCWGG 1 cut(s) 288
BciVI GTATCC 1 cut(s) 352
BcnI CCSGG 2 cut(s) 325, 352
BcuI ACTAGT 1 cut(s) 241
BfaI CTAG 1 cut(s) 242
BfuI GTATCC 1 cut(s) 352
BisI GCNGC 1 cut(s) 425
BlsI GCNGC 1 cut(s) 426
Bme1390I CCNGG 3 cut(s) 288, 325, 352
BmiI GGNNCC 1 cut(s) 356
BmrFI CCNGG 3 cut(s) 288, 325, 352
BmsI GCATC 1 cut(s) 175
BpuMI CCSGG 2 cut(s) 325, 352
BsaJI CCNNGG 1 cut(s) 286
Bsc4I CCNNNNNNNGG 1 cut(s) 351
Bse3DI GCAATG 1 cut(s) 378
BseBI CCWGG 1 cut(s) 288
BseDI CCNNGG 1 cut(s) 286
BseGI GGATG 3 cut(s) 166, 333, 434
BseLI CCNNNNNNNGG 1 cut(s) 351
BseMI GCAATG 1 cut(s) 378
BseMII CTCAG 1 cut(s) 105
Bsh1236I CGCG 1 cut(s) 42
BshNI GGYRCC 1 cut(s) 354
BsiHKAI GWGCWC 1 cut(s) 316
BsiSI CCGG 3 cut(s) 325, 352, 401
BslI CCNNNNNNNGG 1 cut(s) 351
BsmI GAATGC 1 cut(s) 106
Bsp1286I GDGCHC 1 cut(s) 316
BspACI CCGC 2 cut(s) 42, 425
BspCNI CTCAG 1 cut(s) 106
BspFNI CGCG 1 cut(s) 42
BspLI GGNNCC 1 cut(s) 356
BspT107I GGYRCC 1 cut(s) 354
BsrDI GCAATG 1 cut(s) 378
BssECI CCNNGG 1 cut(s) 286
Bst2UI CCWGG 1 cut(s) 288
Bst4CI ACNGT 1 cut(s) 409
Bst6I CTCTTC 1 cut(s) 168
BstAPI GCANNNNNTGC 1 cut(s) 101
BstDEI CTNAG 2 cut(s) 114, 443
BstF5I GGATG 3 cut(s) 166, 333, 434
BstFNI CGCG 1 cut(s) 42
BstHHI GCGC 1 cut(s) 42
BstMWI GCNNNNNNNGC 2 cut(s) 101, 424
BstNI CCWGG 1 cut(s) 288
BstSCI CCNGG 3 cut(s) 286, 323, 350
BstUI CGCG 1 cut(s) 42
BsuI GTATCC 1 cut(s) 352
BtsCI GGATG 3 cut(s) 166, 333, 434
BtsIMutI CAGTG 1 cut(s) 282
CfoI GCGC 1 cut(s) 42
CseI GACGC 1 cut(s) 140
Csp6I GTAC 1 cut(s) 193
CviJI RGCY 1 cut(s) 418
CviKI_1 RGCY 1 cut(s) 418
CviQI GTAC 1 cut(s) 193
DdeI CTNAG 2 cut(s) 114, 443
Eam1104I CTCTTC 1 cut(s) 168
EarI CTCTTC 1 cut(s) 168
EcoRII CCWGG 1 cut(s) 286
FaiI YATR 1 cut(s) 189
Fnu4HI GCNGC 1 cut(s) 425
FokI GGATG 3 cut(s) 153, 340, 421
Fsp4HI GCNGC 1 cut(s) 425
FspBI CTAG 1 cut(s) 242
GlaI GCGC 1 cut(s) 41
GluI GCNGC 1 cut(s) 425
HapII CCGG 3 cut(s) 325, 352, 401
HgaI GACGC 1 cut(s) 140
HhaI GCGC 1 cut(s) 42
Hin6I GCGC 1 cut(s) 40
HinP1I GCGC 1 cut(s) 40
HinfI GANTC 2 cut(s) 389, 397
HpaII CCGG 3 cut(s) 325, 352, 401
HphI GGTGA 1 cut(s) 239
Hpy166II GTNNAC 2 cut(s) 218, 412
Hpy188I TCNGA 1 cut(s) 346
Hpy188III TCNNGA 3 cut(s) 55, 170, 248
Hpy8I GTNNAC 2 cut(s) 218, 412
Hpy99I CGWCG 2 cut(s) 389, 409
HpyCH4III ACNGT 1 cut(s) 409
HpyCH4V TGCA 2 cut(s) 187, 450
HpyF10VI GCNNNNNNNGC 2 cut(s) 101, 424
HpyF3I CTNAG 2 cut(s) 114, 443
HspAI GCGC 1 cut(s) 40
LpnPI CCDG 9 cut(s) 105, 183, 273, 300, 330, 338, 365, 376, 414
LweI GCATC 1 cut(s) 175
MaeI CTAG 1 cut(s) 242
MaeIII GTNAC 1 cut(s) 365
MboII GAAGA 3 cut(s) 40, 185, 364
MhlI GDGCHC 1 cut(s) 316
MluCI AATT 2 cut(s) 83, 144
MlyI GAGTC 2 cut(s) 391, 398
MnlI CCTC 4 cut(s) 31, 174, 292, 450
MseI TTAA 4 cut(s) 120, 147, 162, 294
MspI CCGG 3 cut(s) 325, 352, 401
MspR9I CCNGG 3 cut(s) 288, 325, 352
Mva1269I GAATGC 1 cut(s) 106
MvaI CCWGG 1 cut(s) 288
MvnI CGCG 1 cut(s) 42
MwoI GCNNNNNNNGC 2 cut(s) 101, 424
NciI CCSGG 2 cut(s) 325, 352
NlaIV GGNNCC 1 cut(s) 356
PctI GAATGC 1 cut(s) 106
PkrI GCNGC 1 cut(s) 426
PleI GAGTC 2 cut(s) 391, 397
PpsI GAGTC 2 cut(s) 391, 397
Psp6I CCWGG 1 cut(s) 286
PspGI CCWGG 1 cut(s) 286
PspN4I GGNNCC 1 cut(s) 356
RsaI GTAC 1 cut(s) 194
RsaNI GTAC 1 cut(s) 193
SaqAI TTAA 4 cut(s) 120, 147, 162, 294
SatI GCNGC 1 cut(s) 425
SchI GAGTC 2 cut(s) 391, 398
ScrFI CCNGG 3 cut(s) 288, 325, 352
SduI GDGCHC 1 cut(s) 316
SetI ASST 3 cut(s) 10, 185, 420
SfaNI GCATC 1 cut(s) 175
SpeI ACTAGT 1 cut(s) 241
Sse9I AATT 2 cut(s) 83, 144
SsiI CCGC 2 cut(s) 42, 425
SspMI CTAG 1 cut(s) 242
StyD4I CCNGG 3 cut(s) 286, 323, 350
TaaI ACNGT 1 cut(s) 409
TaqI TCGA 2 cut(s) 48, 247
TasI AATT 2 cut(s) 83, 144
TauI GCSGC 1 cut(s) 427
Tru1I TTAA 4 cut(s) 120, 147, 162, 294
Tru9I TTAA 4 cut(s) 120, 147, 162, 294
TscAI CASTG 1 cut(s) 282
TspDTI ATGAA 1 cut(s) 423
TspRI CASTG 1 cut(s) 282
XspI CTAG 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.