Rh3BG232400

Testis-expressed sequence 10 protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
Physical Location & Seq
Reverse (-)
21522648 .. 21533440
10793 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG232400.1

Sequence Viewer

Length: 1911 bp
ATGGCAGGTTCTAAAAATGCCTCAAAGAAGAAGCAAAAGCGCGGTATCGACTTCAAGAAAATAAAGCGAAAGATTGGCAGAAAATTGCCACCAGCACAGAATGCTACTAATACTGAGATTAAATCTAAAGCAATTGTTCTCCCCGAGCAGAGTGTGGCATCCGAGAAGGCAGGATTAGCAGTGAACAAGAAAGGCTTGACTTTGAAAGAGCTTCTTCAACAAACATCTCATTACAGCTCAAAAGTCCGTAAAGACGCATTGTTGGGAATTAAGGATTTATTCCTTAAGCATCCAGAAGAGTTGAGGTTGCATAAGTATGCTGTTATTGAAAAGCTGCGGGAACGCATTGGTGATGATGATAGACTAGTTCGAGAAACGCTGTATCAACTTTTCAAGTCAGTGATTTTCCCTGGATTTAAGGAGGATAATCAAGAGCTTTTTGTTTCCTTGATGATGGCCTATATATTTAATTCAATGACACATTTAGCAATTGACGTTCGACTGATGGCTTTCAAAATTTTGGAGCTTGTTATCCAGTACTATCCACCTTCCTTTTTCTTGTATGCTGAAAAGATTCTTCAAAACTTTGAGGATATTTTGCGAAAGAACCAGTTTTATTTAGAGGACAAGAGCAAGCTGAAGAATGCTCTTTCTGGGTTGGAGCAATGCTTGTTACTGCTTCCATGTAACAAGAAAGAAGTTGGCTCATGTGAACAGAATGATGCTGGACAAGCGATGCTGCATGCTTTTGACCCTGATGTGCCTGCAAAATCTGCTGGGTTTTCTCTCATCATCCCAAAACTAAAAGACCTTGTGCCAGTTCTAGTCAATTGTTTCCAAGATTTTATTCCTGCAGTACAGACTGGTGAACATCTTGATGTGCAATCATTTGATTGTATGGTGTCTATACTTCACAGTATAAATCATGCAGTCCGGTTCTTTGTTTATATGATTGATGAGGGTACGTCAGAATCACGACCTTCTCATGGGGAGCTTGATGTGGCTATGTTGGGTGGAACTATCTCCATGACGCTGATGAAGAAGTTACTTGTTCTGTTTCCCCTGAACATGAGAAATCAACTTTCTGAGAAGGATGATGTTAAATATTTTGTCTTGGACAGTGTGATGACAGAAATATTTCTGCACTTAAGCAAATGGATCTGCCCTCCCAGTGTTCTGTTGGAGAAATTTTTAGAATTTCTAGAGAATGCGCTGCTTGGAAAGATTTGTAGTGATAGACGCTCTGGTAAAGCAATCCAGGAGAAGCATTTAATTTCACTTCTTCCTTTTGTACCAAAACTTGTTTCGCAAGTGGCAAATGACTGGAAGTCTCGTCTTCTTCAGGCTTTTACTAAGGCATTCAAAGATTGCAATCCTGTGTCATCTTTAAAATTAGCCTGTCTTTCCACAATGGAGGAGATGGTTGTTCCTAGACAAGGCATGCTGTACCTGGATCCAAGGGATCCCGAGATATTAAACTTTCAGATTGCCTGGATAAGAGAGCTTCCCATGTTGCTAATCCTGCTGGGTGATAAGAACACGTCCCACTCCCAGGTTGTGTTACACCTTTTACTTCGGTTGGGACAGCGTGCTTTCATGAACTATTCCTTTGCATTGGAATATGACAACATGCAATTCTCACTGCAAGAATTTTTCTGCATATATCAAGATGATGGAAATATAATATATGGTCCTTTTGTAAGGCTGCCCAGAGAATCTCAGGAACTCTCTCTTTGTTGCCTTCGTTACATCTCTAATTTGGATTTGCATATGTTGAGGTCAATAGCTTATTGTTGCCTATATATGAACACTGTTGAAGTACAGAGAGGTACTGGCAATTTTGGAATACTTTTTTGTAATACTTTCTTTCTTACCTATCCATATCAGGTCCAGAATTGGAACAGTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

636

Amino Acids

72.95

Weight (kDa)

8.61

Isoelectric Point (pI)

40.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ipi1_N PF12333 145 - 212 6.7e-08 Rix1 complex component involved in 60S ribosome maturation
TPR_TEX10 PF25781 497 - 619 1.8e-08 TEX10-like, TPR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 42
AciI CCGC 2 cut(s) 42, 337
AclWI GGATC 5 cut(s) 1166, 1448, 1457, 1461, 1470
AcsI RAATTY 4 cut(s) 516, 1187, 1196, 1649
AcuI CTGAAG 2 cut(s) 659, 1325
AfaI GTAC 7 cut(s) 539, 858, 964, 1293, 1448, 1821, 1831
AfiI CCNNNNNNNGG 3 cut(s) 986, 1436, 1552
AflII CTTAAG 2 cut(s) 284, 1147
AflIII ACRYGT 1 cut(s) 1539
AhdI GACNNNNNGTC 1 cut(s) 1327
AhlI ACTAGT 1 cut(s) 364
AjiI CACGTC 1 cut(s) 1542
AjnI CCWGG 5 cut(s) 409, 1257, 1449, 1490, 1551
AjuI GAANNNNNNNTTGG 4 cut(s) 831, 863, 1288, 1320
AluBI AGCT 9 cut(s) 211, 237, 334, 436, 526, 637, 994, 1504, 1787
AluI AGCT 9 cut(s) 211, 237, 334, 436, 526, 637, 994, 1504, 1787
Alw26I GTCTC 1 cut(s) 1335
AlwI GGATC 5 cut(s) 1166, 1448, 1457, 1461, 1470
Ama87I CYCGRG 2 cut(s) 143, 1466
AoxI GGCC 1 cut(s) 456
ApeKI GCWGC 4 cut(s) 334, 739, 1213, 1705
ApoI RAATTY 4 cut(s) 516, 1187, 1196, 1649
Asp700I GAANNNNTTC 2 cut(s) 573, 1137
AspLEI GCGC 2 cut(s) 42, 1213
AspS9I GGNCC 2 cut(s) 1691, 1888
AsuHPI GGTGA 3 cut(s) 362, 878, 1541
AvaI CYCGRG 2 cut(s) 143, 1466
AvaII GGWCC 2 cut(s) 1691, 1888
BamHI GGATCC 2 cut(s) 1453, 1462
BbsI GAAGAC 1 cut(s) 1328
BbvI GCAGC 4 cut(s) 321, 726, 1200, 1692
BccI CCATC 4 cut(s) 448, 499, 1414, 1667
BciT130I CCWGG 5 cut(s) 411, 1259, 1451, 1492, 1553
BcoDI GTCTC 1 cut(s) 1335
BcuI ACTAGT 1 cut(s) 364
BfaI CTAG 4 cut(s) 365, 824, 1202, 1431
BfmI CTRYAG 1 cut(s) 852
BfrI CTTAAG 2 cut(s) 284, 1147
BisI GCNGC 4 cut(s) 335, 740, 1214, 1706
BlsI GCNGC 4 cut(s) 336, 741, 1215, 1707
BmcAI AGTACT 1 cut(s) 539
Bme1390I CCNGG 5 cut(s) 411, 1259, 1451, 1492, 1553
Bme18I GGWCC 2 cut(s) 1691, 1888
BmeRI GACNNNNNGTC 1 cut(s) 1327
BmeT110I CYCGRG 2 cut(s) 143, 1466
BmgBI CACGTC 1 cut(s) 1542
BmgT120I GGNCC 2 cut(s) 1691, 1888
BmiI GGNNCC 2 cut(s) 1455, 1464
BmrFI CCNGG 5 cut(s) 411, 1259, 1451, 1492, 1553
BmrI ACTGGG 1 cut(s) 1164
BmsI GCATC 4 cut(s) 167, 298, 712, 726
BmuI ACTGGG 1 cut(s) 1164
BpiI GAAGAC 1 cut(s) 1328
BsaBI GATNNNNATC 1 cut(s) 1371
BsaJI CCNNGG 3 cut(s) 409, 1457, 1551
BsaWI WCCGGW 1 cut(s) 933
Bsc4I CCNNNNNNNGG 3 cut(s) 986, 1436, 1552
Bse1I ACTGG 7 cut(s) 535, 610, 818, 868, 1170, 1328, 1837
Bse3DI GCAATG 1 cut(s) 671
Bse8I GATNNNNATC 1 cut(s) 1371
BseBI CCWGG 5 cut(s) 411, 1259, 1451, 1492, 1553
BseDI CCNNGG 3 cut(s) 409, 1457, 1551
BseGI GGATG 4 cut(s) 158, 289, 792, 1099
BseJI GATNNNNATC 1 cut(s) 1371
BseLI CCNNNNNNNGG 3 cut(s) 986, 1436, 1552
BseMI GCAATG 1 cut(s) 671
BseMII CTCAG 3 cut(s) 105, 1077, 1733
BseNI ACTGG 7 cut(s) 535, 610, 818, 868, 1170, 1328, 1837
BseRI GAGGAG 1 cut(s) 1430
BseXI GCAGC 4 cut(s) 321, 726, 1200, 1692
BseYI CCCAGC 2 cut(s) 776, 1525
BsgI GTGCAG 1 cut(s) 1127
Bsh1236I CGCG 1 cut(s) 42
BshFI GGCC 1 cut(s) 458
BsiHKCI CYCGRG 2 cut(s) 143, 1466
BsiSI CCGG 1 cut(s) 934
BslFI GGGAC 2 cut(s) 1528, 1596
BslI CCNNNNNNNGG 3 cut(s) 986, 1436, 1552
BsmAI GTCTC 1 cut(s) 1335
BsmFI GGGAC 2 cut(s) 1528, 1596
BsmI GAATGC 4 cut(s) 106, 649, 1213, 1358
BsnI GGCC 1 cut(s) 458
BsoBI CYCGRG 2 cut(s) 143, 1466
Bsp143I GATC 3 cut(s) 1158, 1453, 1462
BspACI CCGC 2 cut(s) 42, 337
BspANI GGCC 1 cut(s) 458
BspCNI CTCAG 3 cut(s) 106, 1078, 1732
BspFNI CGCG 1 cut(s) 42
BspHI TCATGA 1 cut(s) 1596
BspLI GGNNCC 2 cut(s) 1455, 1464
BspMAI CTGCAG 1 cut(s) 856
BspPI GGATC 5 cut(s) 1166, 1448, 1457, 1461, 1470
BspTI CTTAAG 2 cut(s) 284, 1147
BsrDI GCAATG 1 cut(s) 671
BsrI ACTGG 7 cut(s) 535, 610, 818, 868, 1170, 1328, 1837
BssECI CCNNGG 3 cut(s) 409, 1457, 1551
BssMI GATC 3 cut(s) 1158, 1453, 1462
BssT1I CCWWGG 1 cut(s) 1457
Bst2UI CCWGG 5 cut(s) 411, 1259, 1451, 1492, 1553
Bst4CI ACNGT 4 cut(s) 917, 1121, 1813, 1904
Bst6I CTCTTC 1 cut(s) 291
BstAFI CTTAAG 2 cut(s) 284, 1147
BstAPI GCANNNNNTGC 2 cut(s) 101, 773
BstC8I GCNNGC 5 cut(s) 635, 744, 765, 1442, 1590
BstDEI CTNAG 4 cut(s) 114, 1086, 1353, 1719
BstENI CCTNNNNNAGG 1 cut(s) 1434
BstF5I GGATG 4 cut(s) 158, 289, 792, 1099
BstFNI CGCG 1 cut(s) 42
BstHHI GCGC 2 cut(s) 42, 1213
BstKTI GATC 3 cut(s) 1161, 1456, 1465
BstMAI GTCTC 1 cut(s) 1335
BstMBI GATC 3 cut(s) 1158, 1453, 1462
BstMWI GCNNNNNNNGC 5 cut(s) 101, 176, 731, 773, 1522
BstNI CCWGG 5 cut(s) 411, 1259, 1451, 1492, 1553
BstNSI RCATGY 3 cut(s) 746, 1444, 1633
BstSCI CCNGG 5 cut(s) 409, 1257, 1449, 1490, 1551
BstSFI CTRYAG 1 cut(s) 852
BstUI CGCG 1 cut(s) 42
BstV1I GCAGC 4 cut(s) 321, 726, 1200, 1692
BstV2I GAAGAC 1 cut(s) 1328
BstX2I RGATCY 3 cut(s) 1158, 1453, 1462
BstYI RGATCY 3 cut(s) 1158, 1453, 1462
BsuRI GGCC 1 cut(s) 458
BtgZI GCGATG 1 cut(s) 749
BtrI CACGTC 1 cut(s) 1542
BtsCI GGATG 4 cut(s) 158, 289, 792, 1099
BtsI GCAGTG 2 cut(s) 186, 1640
BtsIMutI CAGTG 6 cut(s) 186, 405, 1126, 1177, 1640, 1809
Cac8I GCNNGC 5 cut(s) 635, 744, 765, 1442, 1590
CciI TCATGA 1 cut(s) 1596
CfoI GCGC 2 cut(s) 42, 1213
Cfr13I GGNCC 2 cut(s) 1691, 1888
CseI GACGC 3 cut(s) 263, 1039, 1248
Csp6I GTAC 7 cut(s) 538, 857, 963, 1292, 1447, 1820, 1830
CviQI GTAC 7 cut(s) 538, 857, 963, 1292, 1447, 1820, 1830
DdeI CTNAG 4 cut(s) 114, 1086, 1353, 1719
DpnI GATC 3 cut(s) 1160, 1455, 1464
DpnII GATC 3 cut(s) 1158, 1453, 1462
DraI TTTAAA 1 cut(s) 1389
DriI GACNNNNNGTC 1 cut(s) 1327
Eam1104I CTCTTC 1 cut(s) 291
Eam1105I GACNNNNNGTC 1 cut(s) 1327
EarI CTCTTC 1 cut(s) 291
Eco130I CCWWGG 1 cut(s) 1457
Eco47I GGWCC 2 cut(s) 1691, 1888
Eco57I CTGAAG 2 cut(s) 659, 1325
Eco88I CYCGRG 2 cut(s) 143, 1466
EcoNI CCTNNNNNAGG 1 cut(s) 1434
EcoRII CCWGG 5 cut(s) 409, 1257, 1449, 1490, 1551
EcoT14I CCWWGG 1 cut(s) 1457
ErhI CCWWGG 1 cut(s) 1457
FalI AAGNNNNNCTT 4 cut(s) 179, 211, 198, 230
FaqI GGGAC 2 cut(s) 1528, 1596
FauI CCCGC 1 cut(s) 330
FauNDI CATATG 1 cut(s) 1770
Fnu4HI GCNGC 4 cut(s) 335, 740, 1214, 1706
FokI GGATG 4 cut(s) 145, 276, 779, 1106
Fsp4HI GCNGC 4 cut(s) 335, 740, 1214, 1706
FspBI CTAG 4 cut(s) 365, 824, 1202, 1431
GlaI GCGC 2 cut(s) 41, 1212
GluI GCNGC 4 cut(s) 335, 740, 1214, 1706
GsaI CCCAGC 2 cut(s) 780, 1529
HaeIII GGCC 1 cut(s) 458
HapII CCGG 1 cut(s) 934
HgaI GACGC 3 cut(s) 263, 1039, 1248
HhaI GCGC 2 cut(s) 42, 1213
Hin6I GCGC 2 cut(s) 40, 1211
HinP1I GCGC 2 cut(s) 40, 1211
HinfI GANTC 3 cut(s) 574, 971, 1715
HpaII CCGG 1 cut(s) 934
HphI GGTGA 3 cut(s) 362, 878, 1541
Hpy166II GTNNAC 3 cut(s) 184, 713, 869
Hpy188I TCNGA 4 cut(s) 163, 970, 1087, 1485
Hpy8I GTNNAC 3 cut(s) 184, 713, 869
HpyAV CCTTC 5 cut(s) 160, 558, 990, 1084, 1751
HpyCH4III ACNGT 4 cut(s) 917, 1121, 1813, 1904
HpyCH4IV ACGT 3 cut(s) 495, 965, 1541
HpyF10VI GCNNNNNNNGC 5 cut(s) 101, 176, 731, 773, 1522
HpyF3I CTNAG 4 cut(s) 114, 1086, 1353, 1719
HpySE526I ACGT 3 cut(s) 495, 965, 1541
HspAI GCGC 2 cut(s) 40, 1211
Kzo9I GATC 3 cut(s) 1158, 1453, 1462
LmnI GCTCC 3 cut(s) 523, 661, 991
Lsp1109I GCAGC 4 cut(s) 321, 726, 1200, 1692
LweI GCATC 4 cut(s) 167, 298, 712, 726
MaeI CTAG 4 cut(s) 365, 824, 1202, 1431
MaeII ACGT 3 cut(s) 495, 965, 1541
MaeIII GTNAC 5 cut(s) 672, 686, 1044, 1560, 1745
MalI GATC 3 cut(s) 1160, 1455, 1464
MboI GATC 3 cut(s) 1158, 1453, 1462
MboII GAAGA 9 cut(s) 40, 206, 308, 569, 652, 1051, 1274, 1328, 1331
MfeI CAATTG 3 cut(s) 132, 489, 829
MflI RGATCY 3 cut(s) 1158, 1453, 1462
MmeI TCCRAC 2 cut(s) 639, 1161
MroXI GAANNNNTTC 2 cut(s) 573, 1137
MslI CAYNNNNRTG 2 cut(s) 315, 876
MspCI CTTAAG 2 cut(s) 284, 1147
MspI CCGG 1 cut(s) 934
MspR9I CCNGG 5 cut(s) 411, 1259, 1451, 1492, 1553
MunI CAATTG 3 cut(s) 132, 489, 829
Mva1269I GAATGC 4 cut(s) 106, 649, 1213, 1358
MvaI CCWGG 5 cut(s) 411, 1259, 1451, 1492, 1553
MvnI CGCG 1 cut(s) 42
MwoI GCNNNNNNNGC 5 cut(s) 101, 176, 731, 773, 1522
NdeI CATATG 1 cut(s) 1770
NdeII GATC 3 cut(s) 1158, 1453, 1462
NlaIV GGNNCC 2 cut(s) 1455, 1464
NspI RCATGY 3 cut(s) 746, 1444, 1633
PaeI GCATGC 2 cut(s) 746, 1444
PagI TCATGA 1 cut(s) 1596
PctI GAATGC 4 cut(s) 106, 649, 1213, 1358
PdmI GAANNNNTTC 2 cut(s) 573, 1137
PfeI GAWTC 3 cut(s) 574, 971, 1715
PfoI TCCNGGA 1 cut(s) 1257
PkrI GCNGC 4 cut(s) 336, 741, 1215, 1707
Psp6I CCWGG 5 cut(s) 409, 1257, 1449, 1490, 1551
PspFI CCCAGC 2 cut(s) 776, 1525
PspGI CCWGG 5 cut(s) 409, 1257, 1449, 1490, 1551
PspN4I GGNNCC 2 cut(s) 1455, 1464
PspPI GGNCC 2 cut(s) 1691, 1888
PstI CTGCAG 1 cut(s) 856
PsuI RGATCY 3 cut(s) 1158, 1453, 1462
RsaI GTAC 7 cut(s) 539, 858, 964, 1293, 1448, 1821, 1831
RsaNI GTAC 7 cut(s) 538, 857, 963, 1292, 1447, 1820, 1830
RseI CAYNNNNRTG 2 cut(s) 315, 876
SatI GCNGC 4 cut(s) 335, 740, 1214, 1706
Sau3AI GATC 3 cut(s) 1158, 1453, 1462
Sau96I GGNCC 2 cut(s) 1691, 1888
ScaI AGTACT 1 cut(s) 539
ScrFI CCNGG 5 cut(s) 411, 1259, 1451, 1492, 1553
SfaNI GCATC 4 cut(s) 167, 298, 712, 726
SfcI CTRYAG 1 cut(s) 852
SinI GGWCC 2 cut(s) 1691, 1888
SmiMI CAYNNNNRTG 2 cut(s) 315, 876
SmlI CTYRAG 2 cut(s) 284, 1147
SmoI CTYRAG 2 cut(s) 284, 1147
SpeI ACTAGT 1 cut(s) 364
SphI GCATGC 2 cut(s) 746, 1444
SsiI CCGC 2 cut(s) 42, 337
SspI AATATT 2 cut(s) 1106, 1137
SspMI CTAG 4 cut(s) 365, 824, 1202, 1431
StyD4I CCNGG 5 cut(s) 409, 1257, 1449, 1490, 1551
StyI CCWWGG 1 cut(s) 1457
TaaI ACNGT 4 cut(s) 917, 1121, 1813, 1904
TaiI ACGT 3 cut(s) 498, 968, 1544
TaqI TCGA 3 cut(s) 48, 370, 499
TatI WGTACW 3 cut(s) 537, 856, 1819
TfiI GAWTC 3 cut(s) 574, 971, 1715
TscAI CASTG 6 cut(s) 186, 405, 1126, 1177, 1647, 1816
TseI GCWGC 4 cut(s) 334, 739, 1213, 1705
TspDTI ATGAA 4 cut(s) 1052, 1585, 1613, 1820
TspGWI ACGGA 1 cut(s) 236
TspRI CASTG 6 cut(s) 186, 405, 1126, 1177, 1647, 1816
Vha464I CTTAAG 2 cut(s) 284, 1147
VpaK11BI GGWCC 2 cut(s) 1691, 1888
XagI CCTNNNNNAGG 1 cut(s) 1434
XapI RAATTY 4 cut(s) 516, 1187, 1196, 1649
XbaI TCTAGA 1 cut(s) 1201
XceI RCATGY 3 cut(s) 746, 1444, 1633
XcmI CCANNNNNNNNNTGG 1 cut(s) 1177
XmnI GAANNNNTTC 2 cut(s) 573, 1137
XspI CTAG 4 cut(s) 365, 824, 1202, 1431
ZrmI AGTACT 1 cut(s) 539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.