pycom12g03410

Testis-expressed sequence 10 protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
Physical Location & Seq
Reverse (-)
3186778 .. 3188416
1639 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g03410.3

Sequence Viewer

Length: 327 bp
ATGATGGCCTATATATTTAATGCAATGACACATTTAGCAATCGATGTTCGGTTGATGGCTTTCAAATTTTTGGAGCTTGCTATCCAATACCATCCACCTTCCTTCTTCTTGAATGCTGAAAAGATTCTTCAAAGCTTTGAGGATATTCTGTGGAGGAACCAGTTTTTTTTAGAGGACAAGGGCAAGCTCAAGACTGCTTTTGCCGGCCTGGAACTATGCTTGTCGCTTTTGCCATGTAACAAGAGAGAAGTTGGCTCGTGTGAAAAGGACAAGATAGGGGTCAATTATAGTCGAGAAAATCAAAGAAACGAGAGATCTACAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

109

Amino Acids

12.63

Weight (kDa)

8.48

Isoelectric Point (pI)

40.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 65
AgsI TTSAA 3 cut(s) 64, 112, 131
AjnI CCWGG 1 cut(s) 207
AluBI AGCT 3 cut(s) 76, 135, 187
AluI AGCT 3 cut(s) 76, 135, 187
AoxI GGCC 2 cut(s) 6, 205
ApoI RAATTY 1 cut(s) 65
Asp700I GAANNNNTTC 1 cut(s) 123
BauI CACGAG 1 cut(s) 256
BccI CCATC 2 cut(s) 49, 99
BciT130I CCWGG 1 cut(s) 209
BglII AGATCT 1 cut(s) 314
Bme1390I CCNGG 1 cut(s) 209
BmiI GGNNCC 1 cut(s) 158
BmrFI CCNGG 1 cut(s) 209
BpuEI CTTGAG 1 cut(s) 173
Bsa29I ATCGAT 1 cut(s) 42
Bse118I RCCGGY 1 cut(s) 203
Bse1I ACTGG 1 cut(s) 160
Bse3DI GCAATG 1 cut(s) 30
BseBI CCWGG 1 cut(s) 209
BseCI ATCGAT 1 cut(s) 42
BseGI GGATG 1 cut(s) 91
BseMI GCAATG 1 cut(s) 30
BseNI ACTGG 1 cut(s) 160
BshFI GGCC 2 cut(s) 8, 207
BshVI ATCGAT 1 cut(s) 42
BsiSI CCGG 1 cut(s) 204
BsmI GAATGC 1 cut(s) 118
BsnI GGCC 2 cut(s) 8, 207
Bsp143I GATC 1 cut(s) 314
BspANI GGCC 2 cut(s) 8, 207
BspDI ATCGAT 1 cut(s) 42
BspLI GGNNCC 1 cut(s) 158
BsrDI GCAATG 1 cut(s) 30
BsrFI RCCGGY 1 cut(s) 203
BsrI ACTGG 1 cut(s) 160
BssAI RCCGGY 1 cut(s) 203
BssMI GATC 1 cut(s) 314
BssSI CACGAG 1 cut(s) 256
Bst2BI CACGAG 1 cut(s) 256
Bst2UI CCWGG 1 cut(s) 209
BstC8I GCNNGC 3 cut(s) 78, 185, 205
BstF5I GGATG 1 cut(s) 91
BstKTI GATC 1 cut(s) 317
BstMBI GATC 1 cut(s) 314
BstNI CCWGG 1 cut(s) 209
BstSCI CCNGG 1 cut(s) 207
BstX2I RGATCY 1 cut(s) 314
BstYI RGATCY 1 cut(s) 314
Bsu15I ATCGAT 1 cut(s) 42
BsuRI GGCC 2 cut(s) 8, 207
BsuTUI ATCGAT 1 cut(s) 42
BtsCI GGATG 1 cut(s) 91
Cac8I GCNNGC 3 cut(s) 78, 185, 205
Cfr10I RCCGGY 1 cut(s) 203
ClaI ATCGAT 1 cut(s) 42
CviAII CATG 1 cut(s) 234
CviJI RGCY 7 cut(s) 8, 59, 76, 135, 187, 207, 255
CviKI_1 RGCY 7 cut(s) 8, 59, 76, 135, 187, 207, 255
DpnI GATC 1 cut(s) 316
DpnII GATC 1 cut(s) 314
EcoRII CCWGG 1 cut(s) 207
FaeI CATG 1 cut(s) 237
FaiI YATR 5 cut(s) 12, 14, 217, 235, 288
FatI CATG 1 cut(s) 233
FokI GGATG 1 cut(s) 78
HaeIII GGCC 2 cut(s) 8, 207
HapII CCGG 1 cut(s) 204
Hin1II CATG 1 cut(s) 237
HindIII AAGCTT 1 cut(s) 133
HinfI GANTC 1 cut(s) 124
HpaII CCGG 1 cut(s) 204
Hpy188III TCNNGA 3 cut(s) 109, 190, 293
HpyAV CCTTC 2 cut(s) 108, 112
HpyCH4V TGCA 1 cut(s) 23
Hsp92II CATG 1 cut(s) 237
KroI GCCGGC 1 cut(s) 203
KroNI GCCGGC 1 cut(s) 205
Kzo9I GATC 1 cut(s) 314
LmnI GCTCC 1 cut(s) 73
LpnPI CCDG 4 cut(s) 173, 194, 217, 221
MaeIII GTNAC 1 cut(s) 236
MalI GATC 1 cut(s) 316
MboI GATC 1 cut(s) 314
MboII GAAGA 2 cut(s) 97, 119
MflI RGATCY 1 cut(s) 314
MluCI AATT 2 cut(s) 65, 283
MnlI CCTC 3 cut(s) 133, 147, 166
MroNI GCCGGC 1 cut(s) 203
MroXI GAANNNNTTC 1 cut(s) 123
MseI TTAA 1 cut(s) 18
MspI CCGG 1 cut(s) 204
MspR9I CCNGG 1 cut(s) 209
Mva1269I GAATGC 1 cut(s) 118
MvaI CCWGG 1 cut(s) 209
NaeI GCCGGC 1 cut(s) 205
NdeII GATC 1 cut(s) 314
NgoMIV GCCGGC 1 cut(s) 203
NlaIII CATG 1 cut(s) 237
NlaIV GGNNCC 1 cut(s) 158
PctI GAATGC 1 cut(s) 118
PdiI GCCGGC 1 cut(s) 205
PdmI GAANNNNTTC 1 cut(s) 123
PfeI GAWTC 1 cut(s) 124
Psp6I CCWGG 1 cut(s) 207
PspGI CCWGG 1 cut(s) 207
PspN4I GGNNCC 1 cut(s) 158
PsuI RGATCY 1 cut(s) 314
SaqAI TTAA 1 cut(s) 18
Sau3AI GATC 1 cut(s) 314
ScrFI CCNGG 1 cut(s) 209
SetI ASST 4 cut(s) 78, 100, 137, 189
SmlI CTYRAG 1 cut(s) 188
SmoI CTYRAG 1 cut(s) 188
Sse9I AATT 2 cut(s) 65, 283
StyD4I CCNGG 1 cut(s) 207
TaqI TCGA 2 cut(s) 42, 292
TasI AATT 2 cut(s) 65, 283
TfiI GAWTC 1 cut(s) 124
Tru1I TTAA 1 cut(s) 18
Tru9I TTAA 1 cut(s) 18
XapI RAATTY 1 cut(s) 65
XmnI GAANNNNTTC 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.